PDB Short entry for 2BVL HEADER TOXIN 30-JUN-05 2BVL TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TOXIN B FROM CLOSTRIDIUM TITLE 2 DIFFICILE IN COMPLEX WITH UDP, GLC AND MANGANESE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-543; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 STRAIN: VPI 10463; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TOXIN, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.REINERT,T.JANK,K.AKTORIES,G.E.SCHULZ REVDAT 5 29-JUL-20 2BVL 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 2BVL 1 VERSN REVDAT 3 24-FEB-09 2BVL 1 VERSN REVDAT 2 20-DEC-06 2BVL 1 JRNL REVDAT 1 03-AUG-05 2BVL 0 JRNL AUTH D.J.REINERT,T.JANK,K.AKTORIES,G.E.SCHULZ JRNL TITL STRUCTURAL BASIS FOR THE FUNCTION OF CLOSTRIDIUM DIFFICILE JRNL TITL 2 TOXIN B. JRNL REF J.MOL.BIOL. V. 351 973 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16054646 JRNL DOI 10.1016/J.JMB.2005.06.071 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.04000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : -3.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.684 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4651 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6344 ; 1.400 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 5.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;36.036 ;25.809 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 841 ;16.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3436 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2303 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3209 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 378 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2795 ; 0.673 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4383 ; 1.116 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 1.819 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1913 ; 2.846 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 543 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7337 47.8340 -6.4307 REMARK 3 T TENSOR REMARK 3 T11: -0.2075 T22: -0.1368 REMARK 3 T33: -0.1078 T12: -0.0409 REMARK 3 T13: 0.0426 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9488 L22: 1.0803 REMARK 3 L33: 1.4071 L12: -0.4120 REMARK 3 L13: -0.0585 L23: 0.4281 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0521 S13: -0.0138 REMARK 3 S21: 0.0345 S22: -0.0070 S23: 0.0811 REMARK 3 S31: 0.1529 S32: -0.0751 S33: 0.0383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1290024672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.45750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.89850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.45750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.89850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 59 TO CYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 244 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 542 TO ALA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 204 O HOH A 2139 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 158 -125.57 53.80 REMARK 500 PRO A 164 -106.45 -80.17 REMARK 500 PRO A 370 -9.09 -55.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 164 ARG A 165 147.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1544 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 GLU A 515 OE1 85.3 REMARK 620 3 UDP A1545 O3B 170.6 104.1 REMARK 620 4 UDP A1545 O1A 86.6 171.8 84.0 REMARK 620 5 HOH A2347 O 92.0 86.1 87.9 93.7 REMARK 620 6 HOH A2348 O 82.2 88.3 98.6 91.1 172.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BVM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TOXIN B FROM REMARK 900 CLOSTRIDIUM DIFFICILE IN COMPLEX WITH UDP, GLC AND MANGANESE ION REMARK 999 REMARK 999 SEQUENCE REMARK 999 STRUCTURE OF MUTANT Y59C-E244G-S542A DBREF 2BVL A 1 1 PDB 2BVL 2BVL 1 1 DBREF 2BVL A 2 543 UNP P18177 TOXB_CLODI 1 542 SEQADV 2BVL CYS A 59 UNP P18177 TYR 58 ENGINEERED MUTATION SEQADV 2BVL GLY A 244 UNP P18177 GLU 243 ENGINEERED MUTATION SEQADV 2BVL ALA A 542 UNP P18177 SER 541 ENGINEERED MUTATION SEQRES 1 A 543 MET SER LEU VAL ASN ARG LYS GLN LEU GLU LYS MET ALA SEQRES 2 A 543 ASN VAL ARG PHE ARG THR GLN GLU ASP GLU TYR VAL ALA SEQRES 3 A 543 ILE LEU ASP ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 A 543 ASN THR VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 A 543 ASN SER LEU THR ASP ILE CYS ILE ASP THR TYR LYS LYS SEQRES 6 A 543 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 A 543 LEU VAL THR GLU VAL LEU GLU LEU LYS ASN ASN ASN LEU SEQRES 8 A 543 THR PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE GLY SEQRES 9 A 543 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 A 543 TRP LYS ASP VAL ASN SER ASP TYR ASN VAL ASN VAL PHE SEQRES 11 A 543 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 A 543 THR VAL VAL GLU SER ALA ILE ASN ASP THR LEU GLU SER SEQRES 13 A 543 PHE ARG GLU ASN LEU ASN ASP PRO ARG PHE ASP TYR ASN SEQRES 14 A 543 LYS PHE PHE ARG LYS ARG MET GLU ILE ILE TYR ASP LYS SEQRES 15 A 543 GLN LYS ASN PHE ILE ASN TYR TYR LYS ALA GLN ARG GLU SEQRES 16 A 543 GLU ASN PRO GLU LEU ILE ILE ASP ASP ILE VAL LYS THR SEQRES 17 A 543 TYR LEU SER ASN GLU TYR SER LYS GLU ILE ASP GLU LEU SEQRES 18 A 543 ASN THR TYR ILE GLU GLU SER LEU ASN LYS ILE THR GLN SEQRES 19 A 543 ASN SER GLY ASN ASP VAL ARG ASN PHE GLY GLU PHE LYS SEQRES 20 A 543 ASN GLY GLU SER PHE ASN LEU TYR GLU GLN GLU LEU VAL SEQRES 21 A 543 GLU ARG TRP ASN LEU ALA ALA ALA SER ASP ILE LEU ARG SEQRES 22 A 543 ILE SER ALA LEU LYS GLU ILE GLY GLY MET TYR LEU ASP SEQRES 23 A 543 VAL ASP MET LEU PRO GLY ILE GLN PRO ASP LEU PHE GLU SEQRES 24 A 543 SER ILE GLU LYS PRO SER SER VAL THR VAL ASP PHE TRP SEQRES 25 A 543 GLU MET THR LYS LEU GLU ALA ILE MET LYS TYR LYS GLU SEQRES 26 A 543 TYR ILE PRO GLU TYR THR SER GLU HIS PHE ASP MET LEU SEQRES 27 A 543 ASP GLU GLU VAL GLN SER SER PHE GLU SER VAL LEU ALA SEQRES 28 A 543 SER LYS SER ASP LYS SER GLU ILE PHE SER SER LEU GLY SEQRES 29 A 543 ASP MET GLU ALA SER PRO LEU GLU VAL LYS ILE ALA PHE SEQRES 30 A 543 ASN SER LYS GLY ILE ILE ASN GLN GLY LEU ILE SER VAL SEQRES 31 A 543 LYS ASP SER TYR CYS SER ASN LEU ILE VAL LYS GLN ILE SEQRES 32 A 543 GLU ASN ARG TYR LYS ILE LEU ASN ASN SER LEU ASN PRO SEQRES 33 A 543 ALA ILE SER GLU ASP ASN ASP PHE ASN THR THR THR ASN SEQRES 34 A 543 THR PHE ILE ASP SER ILE MET ALA GLU ALA ASN ALA ASP SEQRES 35 A 543 ASN GLY ARG PHE MET MET GLU LEU GLY LYS TYR LEU ARG SEQRES 36 A 543 VAL GLY PHE PHE PRO ASP VAL LYS THR THR ILE ASN LEU SEQRES 37 A 543 SER GLY PRO GLU ALA TYR ALA ALA ALA TYR GLN ASP LEU SEQRES 38 A 543 LEU MET PHE LYS GLU GLY SER MET ASN ILE HIS LEU ILE SEQRES 39 A 543 GLU ALA ASP LEU ARG ASN PHE GLU ILE SER LYS THR ASN SEQRES 40 A 543 ILE SER GLN SER THR GLU GLN GLU MET ALA SER LEU TRP SEQRES 41 A 543 SER PHE ASP ASP ALA ARG ALA LYS ALA GLN PHE GLU GLU SEQRES 42 A 543 TYR LYS ARG ASN TYR PHE GLU GLY ALA LEU HET MN A1544 1 HET UDP A1545 25 HET GLC A1546 12 HET SO4 A1547 5 HET TBR A1548 18 HET TBR A1549 18 HET TBR A1550 18 HET TBR A1551 18 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM TBR HEXATANTALUM DODECABROMIDE HETSYN TBR DODECABROMOHEXATANTALUM FORMUL 2 MN MN 2+ FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 GLC C6 H12 O6 FORMUL 5 SO4 O4 S 2- FORMUL 6 TBR 4(BR12 TA6) FORMUL 10 HOH *354(H2 O) HELIX 1 1 ASN A 5 ALA A 13 1 9 HELIX 2 2 GLU A 21 HIS A 35 1 15 HELIX 3 3 THR A 41 TYR A 63 1 23 HELIX 4 4 ARG A 68 ASN A 90 1 23 HELIX 5 5 ASN A 108 ASN A 122 1 15 HELIX 6 6 LEU A 137 ARG A 158 1 22 HELIX 7 7 GLU A 159 ASN A 162 5 4 HELIX 8 8 ASP A 167 ASN A 197 1 31 HELIX 9 9 ILE A 201 SER A 215 1 15 HELIX 10 10 GLU A 217 GLN A 234 1 18 HELIX 11 11 PHE A 243 ASN A 248 1 6 HELIX 12 12 SER A 251 GLU A 261 1 11 HELIX 13 13 ASN A 264 GLY A 281 1 18 HELIX 14 14 THR A 308 GLU A 325 1 18 HELIX 15 15 HIS A 334 LEU A 338 5 5 HELIX 16 16 ASP A 339 SER A 352 1 14 HELIX 17 17 ASP A 355 ILE A 359 5 5 HELIX 18 18 SER A 393 GLU A 420 1 28 HELIX 19 19 ASP A 423 ALA A 439 1 17 HELIX 20 20 ASN A 443 GLY A 451 1 9 HELIX 21 21 LYS A 452 VAL A 456 5 5 HELIX 22 22 THR A 464 SER A 469 1 6 HELIX 23 23 GLY A 470 PHE A 484 1 15 HELIX 24 24 ILE A 494 ARG A 499 1 6 HELIX 25 25 SER A 504 THR A 506 5 3 HELIX 26 26 GLU A 513 ALA A 517 5 5 HELIX 27 27 ASP A 523 GLY A 541 1 19 SHEET 1 AA 2 THR A 92 PRO A 93 0 SHEET 2 AA 2 GLU A 367 ALA A 368 -1 O ALA A 368 N THR A 92 SHEET 1 AB 6 GLY A 237 ASP A 239 0 SHEET 2 AB 6 ASN A 126 TYR A 131 1 O VAL A 129 N ASN A 238 SHEET 3 AB 6 ASN A 97 VAL A 101 1 O LEU A 98 N ASN A 128 SHEET 4 AB 6 GLY A 282 LEU A 285 1 O MET A 283 N HIS A 99 SHEET 5 AB 6 GLY A 381 SER A 389 -1 O LEU A 387 N TYR A 284 SHEET 6 AB 6 LYS A 374 ASN A 378 -1 O LYS A 374 N ILE A 388 SHEET 1 AC 2 LEU A 290 PRO A 291 0 SHEET 2 AC 2 ILE A 508 SER A 509 -1 O SER A 509 N LEU A 290 LINK OD2 ASP A 288 MN MN A1544 1555 1555 2.16 LINK OE1 GLU A 515 MN MN A1544 1555 1555 2.16 LINK MN MN A1544 O3B UDP A1545 1555 1555 2.28 LINK MN MN A1544 O1A UDP A1545 1555 1555 2.08 LINK MN MN A1544 O HOH A2347 1555 1555 2.30 LINK MN MN A1544 O HOH A2348 1555 1555 2.08 CISPEP 1 ASP A 163 PRO A 164 0 -12.11 CRYST1 63.010 95.797 112.915 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008856 0.00000