PDB Short entry for 2BYO HEADER LIPOPROTEIN 03-AUG-05 2BYO TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS LIPOPROTEIN TITLE 2 LPPX (RV2945C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN LPPX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS LIPOPROTEIN, LIPID TRANSPORT, PALMITATE EXPDTA X-RAY DIFFRACTION AUTHOR G.SULZENBACHER,S.CANAAN,V.ROIG-ZAMBONI,D.MAURIN,B.GICQUEL, Y.BOURNE REVDAT 4 13-JUL-11 2BYO 1 VERSN REVDAT 3 24-FEB-09 2BYO 1 VERSN REVDAT 2 20-DEC-06 2BYO 1 JRNL REVDAT 1 22-MAR-06 2BYO 0 JRNL AUTH G.SULZENBACHER,S.CANAAN,Y.BORDAT,O.NEYROLLES,G.STADTHAGEN, JRNL AUTH 2 V.ROIG-ZAMBONI,J.RAUZIER,D.MAURIN,F.LAVAL,M.DAFFE, JRNL AUTH 3 C.CAMBILLAU,B.GICQUEL,Y.BOURNE,M.JACKSON JRNL TITL LPPX IS A LIPOPROTEIN REQUIRED FOR THE TRANSLOCATION OF JRNL TITL 2 PHTHIOCEROL DIMYCOCEROSATES TO THE SURFACE OF MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF EMBO J. V. 25 1436 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16541102 JRNL DOI 10.1038/SJ.EMBOJ.7601048 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 12239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1346 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : 28.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.17000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1443 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1377 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1940 ; 1.268 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3221 ; 0.701 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 6.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;35.886 ;25.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 227 ;12.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1559 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 243 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1294 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 674 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 879 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 1.187 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1464 ; 1.416 ; 3.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 588 ; 1.788 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 476 ; 2.394 ; 5.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9254 14.4338 11.6915 REMARK 3 T TENSOR REMARK 3 T11: -0.4209 T22: -0.3678 REMARK 3 T33: -0.3757 T12: -0.0198 REMARK 3 T13: -0.0260 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 2.2709 L22: 0.4236 REMARK 3 L33: 4.1122 L12: -0.7170 REMARK 3 L13: 2.0336 L23: -0.7673 REMARK 3 S TENSOR REMARK 3 S11: 0.1188 S12: -0.1371 S13: -0.2809 REMARK 3 S21: -0.0966 S22: 0.0605 S23: 0.0169 REMARK 3 S31: 0.4897 S32: -0.1152 S33: -0.1793 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5169 6.9462 23.9364 REMARK 3 T TENSOR REMARK 3 T11: -0.2062 T22: -0.2539 REMARK 3 T33: -0.2979 T12: 0.0629 REMARK 3 T13: -0.0194 T23: 0.1043 REMARK 3 L TENSOR REMARK 3 L11: 2.9198 L22: 3.1587 REMARK 3 L33: 7.2918 L12: -0.4645 REMARK 3 L13: 1.8885 L23: 0.3013 REMARK 3 S TENSOR REMARK 3 S11: 0.1964 S12: 0.0258 S13: -0.6019 REMARK 3 S21: -0.3237 S22: 0.1354 S23: 0.2690 REMARK 3 S31: 1.1500 S32: -0.2646 S33: -0.3318 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2012 17.0005 7.8564 REMARK 3 T TENSOR REMARK 3 T11: -0.3685 T22: -0.2911 REMARK 3 T33: -0.3153 T12: -0.0027 REMARK 3 T13: -0.0144 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 5.1067 L22: 0.7831 REMARK 3 L33: 3.2719 L12: 0.3487 REMARK 3 L13: 0.4304 L23: -0.6341 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.1859 S13: -0.5538 REMARK 3 S21: -0.0626 S22: 0.0853 S23: 0.0206 REMARK 3 S31: 0.4614 S32: -0.2424 S33: -0.1014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2BYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-05. REMARK 100 THE PDBE ID CODE IS EBI-25165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.12100 REMARK 200 R SYM FOR SHELL (I) : 0.12100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NACL, 0.1 M ZN-ACETATE, REMARK 280 0.1 M IMIDAZOLE-MALATE, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 179.98867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.99433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.99150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.99717 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 224.98583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 179.98867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.99433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.99717 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.99150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 224.98583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2013 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 115 REMARK 465 ASP A 116 REMARK 465 PRO A 117 REMARK 465 ALA A 118 REMARK 465 ALA A 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 97 -121.94 60.23 REMARK 500 THR A 122 85.21 -69.13 REMARK 500 LEU A 124 88.89 -64.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 GLU A 80 OE2 128.4 REMARK 620 3 HOH A2118 O 91.6 107.6 REMARK 620 4 GLU A 202 OE2 100.1 118.6 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD2 REMARK 620 2 HIS A 42 NE2 116.4 REMARK 620 3 HOH A2119 O 105.4 107.7 REMARK 620 4 HOH A2120 O 107.2 109.8 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 HIS A 179 NE2 105.6 REMARK 620 3 GLU A 27 OE2 97.3 116.0 REMARK 620 4 ASP A 98 OD1 94.9 130.7 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2121 O REMARK 620 2 ASP A 160 OD1 90.1 REMARK 620 3 HOH A2122 O 94.4 78.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2124 O REMARK 620 2 HOH A2123 O 98.8 REMARK 620 3 HIS A 180 NE2 92.3 100.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1213 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 HIS A 42 ND1 92.8 REMARK 620 3 HOH A2035 O 91.3 137.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAA A1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HXA A1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LNL A1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LNL A1217 DBREF 2BYO A 1 207 UNP P65306 LPPX_MYCTU 27 233 SEQRES 1 A 207 CYS SER SER PRO LYS PRO ASP ALA GLU GLU GLN GLY VAL SEQRES 2 A 207 PRO VAL SER PRO THR ALA SER ASP PRO ALA LEU LEU ALA SEQRES 3 A 207 GLU ILE ARG GLN SER LEU ASP ALA THR LYS GLY LEU THR SEQRES 4 A 207 SER VAL HIS VAL ALA VAL ARG THR THR GLY LYS VAL ASP SEQRES 5 A 207 SER LEU LEU GLY ILE THR SER ALA ASP VAL ASP VAL ARG SEQRES 6 A 207 ALA ASN PRO LEU ALA ALA LYS GLY VAL CYS THR TYR ASN SEQRES 7 A 207 ASP GLU GLN GLY VAL PRO PHE ARG VAL GLN GLY ASP ASN SEQRES 8 A 207 ILE SER VAL LYS LEU PHE ASP ASP TRP SER ASN LEU GLY SEQRES 9 A 207 SER ILE SER GLU LEU SER THR SER ARG VAL LEU ASP PRO SEQRES 10 A 207 ALA ALA GLY VAL THR GLN LEU LEU SER GLY VAL THR ASN SEQRES 11 A 207 LEU GLN ALA GLN GLY THR GLU VAL ILE ASP GLY ILE SER SEQRES 12 A 207 THR THR LYS ILE THR GLY THR ILE PRO ALA SER SER VAL SEQRES 13 A 207 LYS MET LEU ASP PRO GLY ALA LYS SER ALA ARG PRO ALA SEQRES 14 A 207 THR VAL TRP ILE ALA GLN ASP GLY SER HIS HIS LEU VAL SEQRES 15 A 207 ARG ALA SER ILE ASP LEU GLY SER GLY SER ILE GLN LEU SEQRES 16 A 207 THR GLN SER LYS TRP ASN GLU PRO VAL ASN VAL ASP HET ZN A1208 1 HET ZN A1209 1 HET ZN A1210 1 HET ZN A1211 1 HET ZN A1212 1 HET ZN A1213 1 HET ACT A1214 4 HET OAA A1218 9 HET MLT A1219 9 HET HXA A1215 24 HET LNL A1216 20 HET LNL A1217 20 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM OAA OXALOACETATE ION HETNAM MLT MALATE ION HETNAM HXA DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID HETNAM LNL ALPHA-LINOLENIC ACID FORMUL 2 ZN 6(ZN 2+) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 OAA C4 H3 O5 1- FORMUL 10 MLT C4 H5 O5 1- FORMUL 11 HXA C22 H32 O2 FORMUL 12 LNL 2(C18 H30 O2) FORMUL 14 HOH *127(H2 O) HELIX 1 1 ASP A 21 GLY A 37 1 17 HELIX 2 2 ILE A 106 ARG A 113 1 8 HELIX 3 3 PRO A 152 ASP A 160 1 9 SHEET 1 AA11 ASP A 99 SER A 105 0 SHEET 2 AA11 ASN A 91 LEU A 96 -1 O ILE A 92 N LEU A 103 SHEET 3 AA11 GLU A 80 GLN A 88 -1 O PRO A 84 N LYS A 95 SHEET 4 AA11 ALA A 70 TYR A 77 -1 O ALA A 71 N VAL A 87 SHEET 5 AA11 ILE A 57 ARG A 65 -1 N THR A 58 O THR A 76 SHEET 6 AA11 SER A 40 GLY A 49 -1 O VAL A 41 N VAL A 64 SHEET 7 AA11 GLY A 191 SER A 198 -1 O SER A 192 N THR A 48 SHEET 8 AA11 LEU A 181 ASP A 187 -1 O VAL A 182 N GLN A 197 SHEET 9 AA11 ARG A 167 ALA A 174 -1 O PRO A 168 N ASP A 187 SHEET 10 AA11 ILE A 142 ILE A 151 -1 O THR A 145 N ILE A 173 SHEET 11 AA11 THR A 129 ILE A 139 -1 O THR A 129 N THR A 150 LINK ZN ZN A1208 OD1 ASP A 21 1555 1555 1.81 LINK ZN ZN A1208 OE2 GLU A 80 1555 6554 2.00 LINK ZN ZN A1208 O HOH A2118 1555 1555 2.34 LINK ZN ZN A1208 OE2 GLU A 202 1555 8565 1.96 LINK ZN ZN A1209 OD2 ASP A 61 1555 1555 2.05 LINK ZN ZN A1209 NE2 HIS A 42 1555 1555 1.96 LINK ZN ZN A1209 O HOH A2119 1555 1555 2.26 LINK ZN ZN A1209 O HOH A2120 1555 1555 2.43 LINK ZN ZN A1210 OD2 ASP A 99 1555 1555 1.93 LINK ZN ZN A1210 NE2 HIS A 179 1555 5555 2.11 LINK ZN ZN A1210 OE2 GLU A 27 1555 5555 1.98 LINK ZN ZN A1210 OD1 ASP A 98 1555 1555 1.91 LINK ZN ZN A1211 OD1 ASP A 160 1555 1555 2.05 LINK ZN ZN A1211 O HOH A2122 1555 1555 2.75 LINK ZN ZN A1211 O HOH A2121 1555 1555 2.17 LINK ZN ZN A1212 O HOH A2123 1555 1555 2.46 LINK ZN ZN A1212 NE2 HIS A 180 1555 1555 2.14 LINK ZN ZN A1212 O HOH A2124 1555 1555 2.69 LINK ZN ZN A1213 ND1 HIS A 42 1555 1555 1.91 LINK ZN ZN A1213 O HOH A2035 1555 1555 2.60 LINK ZN ZN A1213 OD1 ASP A 63 1555 1555 1.86 CISPEP 1 ASN A 67 PRO A 68 0 -8.37 SITE 1 AC1 4 ASP A 21 GLU A 80 GLU A 202 HOH A2118 SITE 1 AC2 4 HIS A 42 ASP A 61 HOH A2119 HOH A2120 SITE 1 AC3 4 GLU A 27 ASP A 98 ASP A 99 HIS A 179 SITE 1 AC4 3 ASP A 160 HOH A2121 HOH A2122 SITE 1 AC5 4 ALA A 133 HIS A 180 HOH A2123 HOH A2124 SITE 1 AC6 3 HIS A 42 ASP A 63 HOH A2035 SITE 1 AC7 2 ARG A 29 ASP A 33 SITE 1 AC8 7 LYS A 72 GLY A 73 PRO A 84 LYS A 95 SITE 2 AC8 7 TRP A 100 ASN A 205 HOH A2126 SITE 1 AC9 5 LEU A 103 GLY A 104 SER A 105 GLU A 108 SITE 2 AC9 5 HOH A2127 SITE 1 BC1 2 VAL A 121 GLN A 123 SITE 1 BC2 3 ILE A 106 ARG A 113 LNL A1217 SITE 1 BC3 4 LEU A 159 ILE A 193 LEU A 195 LNL A1216 CRYST1 54.257 54.257 269.983 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018431 0.010641 0.000000 0.00000 SCALE2 0.000000 0.021282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003704 0.00000