PDB Short entry for 2C43 HEADER TRANSFERASE 14-OCT-05 2C43 TITLE STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE- TITLE 2 PHOSPHOPANTETHEINYL TRANSFERASE IN COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE-PHOSPHOPANTETHEINYL COMPND 3 TRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 EC: 1.2.1.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOEX-1 KEYWDS TRANSFERASE, FATTY ACID BIOSYNTHESIS, COENZYME A EXPDTA X-RAY DIFFRACTION AUTHOR G.BUNKOCZI,X.WU,E.DUBININA,C.JOHANSSON,C.SMEE,A.TURNBULL,F.VON DELFT, AUTHOR 2 C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM,J.WEIGELT,U.OPPERMANN REVDAT 6 13-DEC-23 2C43 1 LINK REVDAT 5 28-FEB-18 2C43 1 SOURCE JRNL REVDAT 4 24-JAN-18 2C43 1 AUTHOR REVDAT 3 13-JUL-11 2C43 1 VERSN REVDAT 2 24-FEB-09 2C43 1 VERSN REVDAT 1 24-OCT-05 2C43 0 JRNL AUTH G.BUNKOCZI,S.PASTA,A.JOSHI,X.WU,K.L.KAVANAGH,S.SMITH, JRNL AUTH 2 U.OPPERMANN JRNL TITL MECHANISM AND SUBSTRATE RECOGNITION OF HUMAN HOLO ACP JRNL TITL 2 SYNTHASE. JRNL REF CHEM. BIOL. V. 14 1243 2007 JRNL REFN ISSN 1074-5521 JRNL PMID 18022563 JRNL DOI 10.1016/J.CHEMBIOL.2007.10.013 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.4 REMARK 3 NUMBER OF REFLECTIONS : 18745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2391 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2124 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3242 ; 1.665 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4920 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.644 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;34.837 ;23.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;14.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.676 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2617 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 436 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2066 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1136 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1383 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 3.984 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2250 ; 4.963 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1106 ; 7.578 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 991 ; 9.332 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 133 REMARK 3 RESIDUE RANGE : A 276 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2039 -0.4824 2.8770 REMARK 3 T TENSOR REMARK 3 T11: -0.0732 T22: -0.0347 REMARK 3 T33: -0.0511 T12: 0.0020 REMARK 3 T13: 0.0017 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.5411 L22: 0.7285 REMARK 3 L33: 1.3433 L12: 0.2366 REMARK 3 L13: 0.5570 L23: -0.1156 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0715 S13: -0.0081 REMARK 3 S21: 0.0944 S22: 0.0076 S23: 0.0570 REMARK 3 S31: 0.0966 S32: -0.1433 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8429 19.4669 -12.2089 REMARK 3 T TENSOR REMARK 3 T11: -0.0875 T22: -0.0986 REMARK 3 T33: -0.0509 T12: 0.0053 REMARK 3 T13: -0.0029 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.1738 L22: 2.1948 REMARK 3 L33: 1.6461 L12: -0.8993 REMARK 3 L13: -0.0788 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.0117 S13: 0.0585 REMARK 3 S21: -0.0876 S22: -0.0114 S23: -0.0807 REMARK 3 S31: -0.1363 S32: -0.0045 S33: 0.0237 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1290025989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC HR MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 32.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.3 REMARK 200 DATA REDUNDANCY : 5.040 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 29.2 REMARK 200 DATA REDUNDANCY IN SHELL : 0.69 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6K 2.0 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.79450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.37250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.47850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.37250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.79450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.47850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 SER A 108 REMARK 465 SER A 109 REMARK 465 PRO A 258 REMARK 465 ASP A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 ARG A 262 REMARK 465 HIS A 263 REMARK 465 GLN A 264 REMARK 465 ASP A 265 REMARK 465 VAL A 266 REMARK 465 PRO A 267 REMARK 465 SER A 268 REMARK 465 GLN A 269 REMARK 465 ASP A 270 REMARK 465 ASP A 271 REMARK 465 SER A 272 REMARK 465 LYS A 273 REMARK 465 GLY A 316 REMARK 465 THR A 317 REMARK 465 LYS A 318 REMARK 465 SER A 319 REMARK 465 LEU A 320 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 18 CD1 CD2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 ASN A 110 CB CG OD1 ND2 REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 LYS A 165 CD CE NZ REMARK 470 LYS A 174 CD CE NZ REMARK 470 LYS A 236 CE NZ REMARK 470 GLU A 237 CD OE1 OE2 REMARK 470 ILE A 245 CD1 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 78 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 114 52.29 -155.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 7.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1317 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD1 REMARK 620 2 GLU A 191 OE2 91.1 REMARK 620 3 COA A1316 O4A 155.6 72.5 REMARK 620 4 COA A1316 O2A 82.1 98.9 82.8 REMARK 620 5 HOH A2176 O 93.4 175.0 102.6 79.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A1316 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BYD RELATED DB: PDB REMARK 900 STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE- REMARK 900 PHOSPHOPANTETHEINYL TRANSFERASE DBREF 2C43 A 24 319 UNP Q9P0Q3 ADPPT_HUMAN 14 309 SEQADV 2C43 MET A 1 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLY A 2 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 SER A 3 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 SER A 4 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 5 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 6 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 7 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 8 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 9 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 10 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 11 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 SER A 12 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 SER A 13 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLY A 14 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 ARG A 15 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLU A 16 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 ASN A 17 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 LEU A 18 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 TYR A 19 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 PHE A 20 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLN A 21 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLY A 22 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 HIS A 23 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 LEU A 320 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLU A 321 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 SER A 322 UNP Q9P0Q3 EXPRESSION TAG SEQADV 2C43 GLY A 323 UNP Q9P0Q3 EXPRESSION TAG SEQRES 1 A 323 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 323 GLY ARG GLU ASN LEU TYR PHE GLN GLY HIS MET GLU GLY SEQRES 3 A 323 VAL ARG TRP ALA PHE SER CYS GLY THR TRP LEU PRO SER SEQRES 4 A 323 ARG ALA GLU TRP LEU LEU ALA VAL ARG SER ILE GLN PRO SEQRES 5 A 323 GLU GLU LYS GLU ARG ILE GLY GLN PHE VAL PHE ALA ARG SEQRES 6 A 323 ASP ALA LYS ALA ALA MET ALA GLY ARG LEU MET ILE ARG SEQRES 7 A 323 LYS LEU VAL ALA GLU LYS LEU ASN ILE PRO TRP ASN HIS SEQRES 8 A 323 ILE ARG LEU GLN ARG THR ALA LYS GLY LYS PRO VAL LEU SEQRES 9 A 323 ALA LYS ASP SER SER ASN PRO TYR PRO ASN PHE ASN PHE SEQRES 10 A 323 ASN ILE SER HIS GLN GLY ASP TYR ALA VAL LEU ALA ALA SEQRES 11 A 323 GLU PRO GLU LEU GLN VAL GLY ILE ASP ILE MET LYS THR SEQRES 12 A 323 SER PHE PRO GLY ARG GLY SER ILE PRO GLU PHE PHE HIS SEQRES 13 A 323 ILE MET LYS ARG LYS PHE THR ASN LYS GLU TRP GLU THR SEQRES 14 A 323 ILE ARG SER PHE LYS ASP GLU TRP THR GLN LEU ASP MET SEQRES 15 A 323 PHE TYR ARG ASN TRP ALA LEU LYS GLU SER PHE ILE LYS SEQRES 16 A 323 ALA ILE GLY VAL GLY LEU GLY PHE GLU LEU GLN ARG LEU SEQRES 17 A 323 GLU PHE ASP LEU SER PRO LEU ASN LEU ASP ILE GLY GLN SEQRES 18 A 323 VAL TYR LYS GLU THR ARG LEU PHE LEU ASP GLY GLU GLU SEQRES 19 A 323 GLU LYS GLU TRP ALA PHE GLU GLU SER LYS ILE ASP GLU SEQRES 20 A 323 HIS HIS PHE VAL ALA VAL ALA LEU ARG LYS PRO ASP GLY SEQRES 21 A 323 SER ARG HIS GLN ASP VAL PRO SER GLN ASP ASP SER LYS SEQRES 22 A 323 PRO THR GLN ARG GLN PHE THR ILE LEU ASN PHE ASN ASP SEQRES 23 A 323 LEU MET SER SER ALA VAL PRO MET THR PRO GLU ASP PRO SEQRES 24 A 323 SER PHE TRP ASP CYS PHE CYS PHE THR GLU GLU ILE PRO SEQRES 25 A 323 ILE ARG ASN GLY THR LYS SER LEU GLU SER GLY HET COA A1316 48 HET MG A1317 1 HET CL A1318 1 HETNAM COA COENZYME A HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *180(H2 O) HELIX 1 1 CYS A 33 TRP A 36 5 4 HELIX 2 2 SER A 39 SER A 49 1 11 HELIX 3 3 GLN A 51 GLN A 60 1 10 HELIX 4 4 PHE A 63 LEU A 85 1 23 HELIX 5 5 PRO A 88 ILE A 92 5 5 HELIX 6 6 SER A 150 MET A 158 1 9 HELIX 7 7 LYS A 159 PHE A 162 5 4 HELIX 8 8 THR A 163 ARG A 171 1 9 HELIX 9 9 ASP A 175 GLY A 198 1 24 HELIX 10 10 GLU A 204 GLN A 206 5 3 HELIX 11 11 ASN A 283 MET A 288 1 6 HELIX 12 12 ASP A 298 TRP A 302 5 5 HELIX 13 13 PHE A 307 ILE A 311 5 5 SHEET 1 AA 4 ASN A 116 GLN A 122 0 SHEET 2 AA 4 TYR A 125 GLU A 131 -1 O TYR A 125 N GLN A 122 SHEET 3 AA 4 VAL A 27 PHE A 31 -1 O VAL A 27 N ALA A 130 SHEET 4 AA 4 THR A 280 LEU A 282 1 O THR A 280 N ALA A 30 SHEET 1 AB 2 LEU A 94 ARG A 96 0 SHEET 2 AB 2 PRO A 102 LEU A 104 -1 O VAL A 103 N GLN A 95 SHEET 1 AC 3 GLN A 135 LYS A 142 0 SHEET 2 AC 3 HIS A 249 ARG A 256 -1 O PHE A 250 N MET A 141 SHEET 3 AC 3 TRP A 238 ASP A 246 -1 O ALA A 239 N LEU A 255 SHEET 1 AD 3 LEU A 208 ASP A 211 0 SHEET 2 AD 3 ARG A 227 LEU A 230 -1 O ARG A 227 N ASP A 211 SHEET 3 AD 3 GLU A 233 GLU A 234 -1 O GLU A 233 N LEU A 230 LINK OD1 ASP A 139 MG MG A1317 1555 1555 2.13 LINK OE2 GLU A 191 MG MG A1317 1555 1555 2.09 LINK O4A COA A1316 MG MG A1317 1555 1555 2.22 LINK O2A COA A1316 MG MG A1317 1555 1555 2.38 LINK MG MG A1317 O HOH A2176 1555 1555 2.15 CISPEP 1 SER A 213 PRO A 214 0 -4.61 SITE 1 AC1 5 ASP A 139 MET A 141 GLU A 191 COA A1316 SITE 2 AC1 5 HOH A2176 SITE 1 AC2 3 GLN A 51 ARG A 74 ARG A 78 SITE 1 AC3 29 ARG A 57 ARG A 96 LYS A 99 GLY A 100 SITE 2 AC3 29 LYS A 101 PRO A 102 ASN A 118 ILE A 119 SITE 3 AC3 29 SER A 120 HIS A 121 ASP A 139 TRP A 187 SITE 4 AC3 29 GLU A 191 ILE A 194 LYS A 195 GLY A 198 SITE 5 AC3 29 GLY A 200 LEU A 201 LEU A 205 MG A1317 SITE 6 AC3 29 HOH A2036 HOH A2066 HOH A2102 HOH A2175 SITE 7 AC3 29 HOH A2176 HOH A2177 HOH A2178 HOH A2179 SITE 8 AC3 29 HOH A2180 CRYST1 65.589 68.957 70.745 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014135 0.00000