PDB Short entry for 2CA6 HEADER SIGNALING REGULATOR 17-DEC-05 2CA6 TITLE MIRAS STRUCTURE DETERMINATION FROM HEMIHEDRALLY TWINNED CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAN GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNA1P, PROTEIN RNA1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINI OF BOTH COPIES OF RNA1P (RESIDUES 345-386) COMPND 7 ARE DISORDERED AND WERE OMITTED FROM THE MODEL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3D KEYWDS GAP, GTPASE ACTIVATION, GTPASE-ACTIVATING PROTEIN, HEMIHEDRAL KEYWDS 2 TWINNING, LEUCINE-RICH REPEAT PROTEIN, LRR, MEROHEDRAL TWINNING, KEYWDS 3 MEROHEDRY, RANGAP, RNA1P, SIGNALING PROTEIN, SIGNALING ACTIVATOR, KEYWDS 4 NUCLEAR TRANSPORT, SIGNALING REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.C.HILLIG,L.RENAULT REVDAT 5 24-JUL-19 2CA6 1 REMARK REVDAT 4 24-FEB-09 2CA6 1 VERSN REVDAT 3 28-JUN-06 2CA6 1 JRNL REVDAT 2 03-MAR-06 2CA6 1 REMARK REVDAT 1 11-JAN-06 2CA6 0 JRNL AUTH R.C.HILLIG,L.RENAULT JRNL TITL DETECTING AND OVERCOMING HEMIHEDRAL TWINNING DURING THE MIR JRNL TITL 2 STRUCTURE DETERMINATION OF RNA1P. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 750 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16790931 JRNL DOI 10.1107/S0907444906016222 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.HILLIG,L.RENAULT,I.R.VETTER,T.DRELL,A.WITTINGHOFER, REMARK 1 AUTH 2 J.BECKER REMARK 1 TITL THE CRYSTAL STRUCTURE OF RNA1P: A NEW FOLD FOR A REMARK 1 TITL 2 GTPASE-ACTIVATING PROTEIN REMARK 1 REF MOL.CELL V. 3 781 1999 REMARK 1 REFN ISSN 1097-2765 REMARK 1 PMID 10394366 REMARK 1 DOI 10.1016/S1097-2765(01)80010-1 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.SEEWALD,C.KORNER,A.WITTINGHOFER,I.R.VETTER REMARK 1 TITL RANGAP MEDIATES GTP HYDROLYSIS WITHOUT AN ARGININE FINGER REMARK 1 REF NATURE V. 415 662 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 11832950 REMARK 1 DOI 10.1038/415662A REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2002 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : CNX SCRIPT MAKE_CV_ TWIN.INP, REMARK 3 ENSURES THAT TWIN -RELATED REMARK 3 PAIRS OF REFLECTIONS ARE REMARK 3 EITHER BOTH IN TEST OR BOTH REMARK 3 IN WORK SET REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3957 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.25 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94800 REMARK 3 B22 (A**2) : -3.94800 REMARK 3 B33 (A**2) : 7.89600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.230 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.897 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.775 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.317 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.459 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK AROUND THE MOLECULE, DETERMINED AUTOMATICALLY REMARK 3 BY CNX REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.24 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : ION.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA SET SHOWS HEMIHEDRAL TWINNING REMARK 3 WITH A HIGH TWIN FRACTION OF 0.39. THE MODEL WAS REFINED AGAINST REMARK 3 THIS ORIGINAL DATA SET, I.E. REFLECTIONS NOT TWIN CORRECTED, BY REMARK 3 USING CNX IN TWIN MODE. ALL R FACTORS ARE SO CALLED TWINNED R REMARK 3 FACTORS, CALCULATED FROM THE DIFFERENCES BETWEEN THE ORIGINAL REMARK 3 TWINNED REFLECTIONS AND THE ARTIFICIALLY TWINNED REFLECTIONS REMARK 3 CALCULATED FROM THE MODEL. REMARK 4 REMARK 4 2CA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER PROTEIN (25MG/ML IN 20MM REMARK 280 TRIS-HCL PH7.5, 2MMDTE) AND 2 MICROLITER RESERVOIR (24% REMARK 280 PEG2000MME, 100MM TRIS PH8.5, 200MM LI2SO4, 20MM MGCL2)., PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 87.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 87.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.92500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.96250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.60500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.88750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 87.60500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.92500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 87.60500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.88750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 87.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 13.96250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 GTPASE ACTIVATOR FOR THE NUCLEAR RAS-RELATED REGULATORY REMARK 400 PROTEIN SPI1 (RAN), CONVERTING IT TO THE GDP-BOUND STATE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 346 REMARK 465 THR A 347 REMARK 465 ASP A 348 REMARK 465 GLU A 349 REMARK 465 GLU A 350 REMARK 465 GLU A 351 REMARK 465 GLU A 352 REMARK 465 ASP A 353 REMARK 465 GLU A 354 REMARK 465 GLU A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 ALA A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 465 GLN A 361 REMARK 465 SER A 362 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 PRO A 365 REMARK 465 GLU A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 GLU A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 LYS A 372 REMARK 465 GLU A 373 REMARK 465 ASP A 374 REMARK 465 LYS A 375 REMARK 465 GLU A 376 REMARK 465 LEU A 377 REMARK 465 ALA A 378 REMARK 465 ASP A 379 REMARK 465 GLU A 380 REMARK 465 LEU A 381 REMARK 465 SER A 382 REMARK 465 LYS A 383 REMARK 465 ALA A 384 REMARK 465 HIS A 385 REMARK 465 ILE A 386 REMARK 465 MET B 1 REMARK 465 LEU B 346 REMARK 465 THR B 347 REMARK 465 ASP B 348 REMARK 465 GLU B 349 REMARK 465 GLU B 350 REMARK 465 GLU B 351 REMARK 465 GLU B 352 REMARK 465 ASP B 353 REMARK 465 GLU B 354 REMARK 465 GLU B 355 REMARK 465 GLU B 356 REMARK 465 GLU B 357 REMARK 465 ALA B 358 REMARK 465 GLU B 359 REMARK 465 SER B 360 REMARK 465 GLN B 361 REMARK 465 SER B 362 REMARK 465 PRO B 363 REMARK 465 GLU B 364 REMARK 465 PRO B 365 REMARK 465 GLU B 366 REMARK 465 THR B 367 REMARK 465 SER B 368 REMARK 465 GLU B 369 REMARK 465 GLU B 370 REMARK 465 GLU B 371 REMARK 465 LYS B 372 REMARK 465 GLU B 373 REMARK 465 ASP B 374 REMARK 465 LYS B 375 REMARK 465 GLU B 376 REMARK 465 LEU B 377 REMARK 465 ALA B 378 REMARK 465 ASP B 379 REMARK 465 GLU B 380 REMARK 465 LEU B 381 REMARK 465 SER B 382 REMARK 465 LYS B 383 REMARK 465 ALA B 384 REMARK 465 HIS B 385 REMARK 465 ILE B 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 345 CA C O CB CG CD OE1 REMARK 470 GLU A 345 OE2 REMARK 470 GLU B 345 CA C O CB CG CD OE1 REMARK 470 GLU B 345 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -163.75 -57.64 REMARK 500 VAL A 24 -57.84 -121.19 REMARK 500 ASP A 69 75.19 45.81 REMARK 500 ILE A 70 19.75 -140.87 REMARK 500 PHE A 71 20.33 -142.28 REMARK 500 GLU A 125 -33.84 -133.69 REMARK 500 ASN A 131 74.14 65.44 REMARK 500 ASN A 169 19.04 -145.54 REMARK 500 GLU A 172 -163.54 39.66 REMARK 500 HIS A 186 76.66 -118.09 REMARK 500 PHE A 228 -61.53 -93.38 REMARK 500 THR A 229 -173.15 63.75 REMARK 500 TRP A 243 75.22 -110.47 REMARK 500 LEU A 255 53.35 39.30 REMARK 500 SER A 257 174.45 92.20 REMARK 500 TYR A 283 71.24 50.35 REMARK 500 ARG A 314 44.92 -91.22 REMARK 500 ILE B 6 14.88 -153.52 REMARK 500 SER B 10 52.13 32.67 REMARK 500 THR B 17 -131.44 -46.87 REMARK 500 SER B 23 -25.02 -154.45 REMARK 500 ASP B 69 77.37 44.46 REMARK 500 GLU B 125 -33.90 -132.48 REMARK 500 ASN B 131 71.93 60.87 REMARK 500 ARG B 170 54.34 35.37 REMARK 500 GLU B 172 179.62 55.00 REMARK 500 THR B 229 179.66 63.65 REMARK 500 SER B 257 153.41 96.39 REMARK 500 LEU B 340 58.42 -92.08 REMARK 500 ASP B 342 44.95 -140.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1348 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K5D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAN-GPPNHP-RANBP1- RANGAP COMPLEX REMARK 900 RELATED ID: 1K5G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAN-GDP-ALFX-RANBP1- RANGAP COMPLEX REMARK 900 RELATED ID: 1YRG RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF RNA1P: A NEW FOLD FOR A GTPASE-ACTIVATING REMARK 900 PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT SHOWN IN THE SEQADV RECORDS BELOW SER2ALA REMARK 999 IS A CLONING ARTEFACT DUE TO EXPRESSION SYSTEM. MET 1 IS REMARK 999 CLEAVED OFF. DBREF 2CA6 A 1 386 UNP P41391 RNA1_SCHPO 1 386 DBREF 2CA6 B 1 386 UNP P41391 RNA1_SCHPO 1 386 SEQADV 2CA6 ALA A 2 UNP P41391 SER 2 CONFLICT SEQADV 2CA6 ALA B 2 UNP P41391 SER 2 CONFLICT SEQRES 1 A 386 MET ALA ARG PHE SER ILE GLU GLY LYS SER LEU LYS LEU SEQRES 2 A 386 ASP ALA ILE THR THR GLU ASP GLU LYS SER VAL PHE ALA SEQRES 3 A 386 VAL LEU LEU GLU ASP ASP SER VAL LYS GLU ILE VAL LEU SEQRES 4 A 386 SER GLY ASN THR ILE GLY THR GLU ALA ALA ARG TRP LEU SEQRES 5 A 386 SER GLU ASN ILE ALA SER LYS LYS ASP LEU GLU ILE ALA SEQRES 6 A 386 GLU PHE SER ASP ILE PHE THR GLY ARG VAL LYS ASP GLU SEQRES 7 A 386 ILE PRO GLU ALA LEU ARG LEU LEU LEU GLN ALA LEU LEU SEQRES 8 A 386 LYS CYS PRO LYS LEU HIS THR VAL ARG LEU SER ASP ASN SEQRES 9 A 386 ALA PHE GLY PRO THR ALA GLN GLU PRO LEU ILE ASP PHE SEQRES 10 A 386 LEU SER LYS HIS THR PRO LEU GLU HIS LEU TYR LEU HIS SEQRES 11 A 386 ASN ASN GLY LEU GLY PRO GLN ALA GLY ALA LYS ILE ALA SEQRES 12 A 386 ARG ALA LEU GLN GLU LEU ALA VAL ASN LYS LYS ALA LYS SEQRES 13 A 386 ASN ALA PRO PRO LEU ARG SER ILE ILE CYS GLY ARG ASN SEQRES 14 A 386 ARG LEU GLU ASN GLY SER MET LYS GLU TRP ALA LYS THR SEQRES 15 A 386 PHE GLN SER HIS ARG LEU LEU HIS THR VAL LYS MET VAL SEQRES 16 A 386 GLN ASN GLY ILE ARG PRO GLU GLY ILE GLU HIS LEU LEU SEQRES 17 A 386 LEU GLU GLY LEU ALA TYR CYS GLN GLU LEU LYS VAL LEU SEQRES 18 A 386 ASP LEU GLN ASP ASN THR PHE THR HIS LEU GLY SER SER SEQRES 19 A 386 ALA LEU ALA ILE ALA LEU LYS SER TRP PRO ASN LEU ARG SEQRES 20 A 386 GLU LEU GLY LEU ASN ASP CYS LEU LEU SER ALA ARG GLY SEQRES 21 A 386 ALA ALA ALA VAL VAL ASP ALA PHE SER LYS LEU GLU ASN SEQRES 22 A 386 ILE GLY LEU GLN THR LEU ARG LEU GLN TYR ASN GLU ILE SEQRES 23 A 386 GLU LEU ASP ALA VAL ARG THR LEU LYS THR VAL ILE ASP SEQRES 24 A 386 GLU LYS MET PRO ASP LEU LEU PHE LEU GLU LEU ASN GLY SEQRES 25 A 386 ASN ARG PHE SER GLU GLU ASP ASP VAL VAL ASP GLU ILE SEQRES 26 A 386 ARG GLU VAL PHE SER THR ARG GLY ARG GLY GLU LEU ASP SEQRES 27 A 386 GLU LEU ASP ASP MET GLU GLU LEU THR ASP GLU GLU GLU SEQRES 28 A 386 GLU ASP GLU GLU GLU GLU ALA GLU SER GLN SER PRO GLU SEQRES 29 A 386 PRO GLU THR SER GLU GLU GLU LYS GLU ASP LYS GLU LEU SEQRES 30 A 386 ALA ASP GLU LEU SER LYS ALA HIS ILE SEQRES 1 B 386 MET ALA ARG PHE SER ILE GLU GLY LYS SER LEU LYS LEU SEQRES 2 B 386 ASP ALA ILE THR THR GLU ASP GLU LYS SER VAL PHE ALA SEQRES 3 B 386 VAL LEU LEU GLU ASP ASP SER VAL LYS GLU ILE VAL LEU SEQRES 4 B 386 SER GLY ASN THR ILE GLY THR GLU ALA ALA ARG TRP LEU SEQRES 5 B 386 SER GLU ASN ILE ALA SER LYS LYS ASP LEU GLU ILE ALA SEQRES 6 B 386 GLU PHE SER ASP ILE PHE THR GLY ARG VAL LYS ASP GLU SEQRES 7 B 386 ILE PRO GLU ALA LEU ARG LEU LEU LEU GLN ALA LEU LEU SEQRES 8 B 386 LYS CYS PRO LYS LEU HIS THR VAL ARG LEU SER ASP ASN SEQRES 9 B 386 ALA PHE GLY PRO THR ALA GLN GLU PRO LEU ILE ASP PHE SEQRES 10 B 386 LEU SER LYS HIS THR PRO LEU GLU HIS LEU TYR LEU HIS SEQRES 11 B 386 ASN ASN GLY LEU GLY PRO GLN ALA GLY ALA LYS ILE ALA SEQRES 12 B 386 ARG ALA LEU GLN GLU LEU ALA VAL ASN LYS LYS ALA LYS SEQRES 13 B 386 ASN ALA PRO PRO LEU ARG SER ILE ILE CYS GLY ARG ASN SEQRES 14 B 386 ARG LEU GLU ASN GLY SER MET LYS GLU TRP ALA LYS THR SEQRES 15 B 386 PHE GLN SER HIS ARG LEU LEU HIS THR VAL LYS MET VAL SEQRES 16 B 386 GLN ASN GLY ILE ARG PRO GLU GLY ILE GLU HIS LEU LEU SEQRES 17 B 386 LEU GLU GLY LEU ALA TYR CYS GLN GLU LEU LYS VAL LEU SEQRES 18 B 386 ASP LEU GLN ASP ASN THR PHE THR HIS LEU GLY SER SER SEQRES 19 B 386 ALA LEU ALA ILE ALA LEU LYS SER TRP PRO ASN LEU ARG SEQRES 20 B 386 GLU LEU GLY LEU ASN ASP CYS LEU LEU SER ALA ARG GLY SEQRES 21 B 386 ALA ALA ALA VAL VAL ASP ALA PHE SER LYS LEU GLU ASN SEQRES 22 B 386 ILE GLY LEU GLN THR LEU ARG LEU GLN TYR ASN GLU ILE SEQRES 23 B 386 GLU LEU ASP ALA VAL ARG THR LEU LYS THR VAL ILE ASP SEQRES 24 B 386 GLU LYS MET PRO ASP LEU LEU PHE LEU GLU LEU ASN GLY SEQRES 25 B 386 ASN ARG PHE SER GLU GLU ASP ASP VAL VAL ASP GLU ILE SEQRES 26 B 386 ARG GLU VAL PHE SER THR ARG GLY ARG GLY GLU LEU ASP SEQRES 27 B 386 GLU LEU ASP ASP MET GLU GLU LEU THR ASP GLU GLU GLU SEQRES 28 B 386 GLU ASP GLU GLU GLU GLU ALA GLU SER GLN SER PRO GLU SEQRES 29 B 386 PRO GLU THR SER GLU GLU GLU LYS GLU ASP LYS GLU LEU SEQRES 30 B 386 ALA ASP GLU LEU SER LYS ALA HIS ILE HET SO4 B1345 5 HET SO4 B1346 5 HET SO4 B1347 5 HET SO4 B1348 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *273(H2 O) HELIX 1 1 THR A 18 SER A 23 1 6 HELIX 2 2 PHE A 25 ASP A 31 1 7 HELIX 3 3 GLY A 45 ASN A 55 1 11 HELIX 4 4 VAL A 75 GLU A 78 5 4 HELIX 5 5 ILE A 79 LEU A 91 1 13 HELIX 6 6 ALA A 110 HIS A 121 1 12 HELIX 7 7 LEU A 134 ASN A 157 1 24 HELIX 8 8 GLU A 172 GLY A 174 5 3 HELIX 9 9 SER A 175 HIS A 186 1 12 HELIX 10 10 ARG A 200 GLU A 210 1 11 HELIX 11 11 GLY A 211 CYS A 215 5 5 HELIX 12 12 PHE A 228 LEU A 240 1 13 HELIX 13 13 LYS A 241 TRP A 243 5 3 HELIX 14 14 SER A 257 LYS A 270 1 14 HELIX 15 15 GLU A 287 MET A 302 1 16 HELIX 16 16 ASP A 319 GLY A 333 1 15 HELIX 17 17 GLY B 45 LYS B 59 1 15 HELIX 18 18 VAL B 75 GLU B 78 5 4 HELIX 19 19 ILE B 79 LEU B 91 1 13 HELIX 20 20 GLY B 107 THR B 109 5 3 HELIX 21 21 ALA B 110 SER B 119 1 10 HELIX 22 22 LEU B 134 ASN B 157 1 24 HELIX 23 23 GLU B 172 GLY B 174 5 3 HELIX 24 24 SER B 175 HIS B 186 1 12 HELIX 25 25 ARG B 200 GLY B 211 1 12 HELIX 26 26 LEU B 212 CYS B 215 5 4 HELIX 27 27 PHE B 228 LEU B 240 1 13 HELIX 28 28 LYS B 241 TRP B 243 5 3 HELIX 29 29 SER B 257 SER B 269 1 13 HELIX 30 30 GLU B 287 MET B 302 1 16 HELIX 31 31 ASP B 320 GLY B 333 1 14 SHEET 1 AA12 ARG A 3 SER A 5 0 SHEET 2 AA12 GLU A 36 VAL A 38 1 O GLU A 36 N PHE A 4 SHEET 3 AA12 ILE A 64 GLU A 66 1 O ILE A 64 N ILE A 37 SHEET 4 AA12 THR A 98 ARG A 100 1 O THR A 98 N ALA A 65 SHEET 5 AA12 HIS A 126 TYR A 128 1 O HIS A 126 N VAL A 99 SHEET 6 AA12 SER A 163 ILE A 165 1 O SER A 163 N LEU A 127 SHEET 7 AA12 THR A 191 LYS A 193 1 O THR A 191 N ILE A 164 SHEET 8 AA12 VAL A 220 ASP A 222 1 O VAL A 220 N VAL A 192 SHEET 9 AA12 GLU A 248 GLY A 250 1 O GLU A 248 N LEU A 221 SHEET 10 AA12 THR A 278 ARG A 280 1 O THR A 278 N LEU A 249 SHEET 11 AA12 PHE A 307 GLU A 309 1 O PHE A 307 N LEU A 279 SHEET 12 AA12 GLU A 336 LEU A 337 1 O GLU A 336 N LEU A 308 SHEET 1 AB 2 LYS A 12 LEU A 13 0 SHEET 2 AB 2 THR A 43 ILE A 44 1 O THR A 43 N LEU A 13 SHEET 1 BA12 ARG B 3 SER B 5 0 SHEET 2 BA12 GLU B 36 VAL B 38 1 O GLU B 36 N PHE B 4 SHEET 3 BA12 ILE B 64 GLU B 66 1 O ILE B 64 N ILE B 37 SHEET 4 BA12 THR B 98 ARG B 100 1 O THR B 98 N ALA B 65 SHEET 5 BA12 HIS B 126 TYR B 128 1 O HIS B 126 N VAL B 99 SHEET 6 BA12 SER B 163 ILE B 165 1 O SER B 163 N LEU B 127 SHEET 7 BA12 THR B 191 LYS B 193 1 O THR B 191 N ILE B 164 SHEET 8 BA12 VAL B 220 ASP B 222 1 O VAL B 220 N VAL B 192 SHEET 9 BA12 GLU B 248 GLY B 250 1 O GLU B 248 N LEU B 221 SHEET 10 BA12 THR B 278 ARG B 280 1 O THR B 278 N LEU B 249 SHEET 11 BA12 PHE B 307 GLU B 309 1 O PHE B 307 N LEU B 279 SHEET 12 BA12 GLU B 336 LEU B 337 1 O GLU B 336 N LEU B 308 SHEET 1 BB 2 LYS B 12 LEU B 13 0 SHEET 2 BB 2 THR B 43 ILE B 44 1 O THR B 43 N LEU B 13 SITE 1 AC1 3 ARG A 162 LYS B 219 HOH B2120 SITE 1 AC2 4 ARG B 162 HOH B2062 HOH B2121 HOH B2122 SITE 1 AC3 5 ARG B 50 ARG B 84 LEU B 85 HOH B2017 SITE 2 AC3 5 HOH B2124 SITE 1 AC4 4 LYS A 35 TYR B 128 LYS B 193 HOH B2125 CRYST1 175.210 175.210 55.850 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017905 0.00000 MTRIX1 1 -0.997290 0.073350 0.006110 76.84581 1 MTRIX2 1 0.073360 0.997300 0.001670 -3.71842 1 MTRIX3 1 -0.005970 0.002110 -0.999980 47.88696 1