PDB Short entry for 2CCR HEADER HYDROLASE 18-JAN-06 2CCR TITLE STRUCTURE OF BETA-1,4-GALACTANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YVFO; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-1,4-GALACTANASE; COMPND 5 EC: 3.2.1.89; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 ATCC: 14580; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PL2306; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PMOL944 KEYWDS BETA-1, 4-GALACTANASE, GLYCOSIDE HYDROLASE FAMILY 53, GH-A, GALACTAN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LE NOURS,L.DE MARIA,D.WELNER,C.T.JORGENSEN,L.L.H.CHRISTENSEN, AUTHOR 2 S.LARSEN,L.LO LEGGIO REVDAT 6 13-DEC-23 2CCR 1 HETSYN REVDAT 5 29-JUL-20 2CCR 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 17-JAN-18 2CCR 1 REMARK REVDAT 3 24-NOV-09 2CCR 1 JRNL DBREF REVDAT 2 24-FEB-09 2CCR 1 VERSN REVDAT 1 21-MAR-06 2CCR 0 JRNL AUTH J.LE NOURS,L.DE MARIA,D.WELNER,C.T.JORGENSEN, JRNL AUTH 2 L.L.H.CHRISTENSEN,T.V.BORCHERT,S.LARSEN,L.LO LEGGIO JRNL TITL INVESTIGATING THE BINDING OF BETA-1,4-GALACTAN TO BACILLUS JRNL TITL 2 LICHENIFORMIS BETA-1,4-GALACTANASE BY CRYSTALLOGRAPHY AND JRNL TITL 3 COMPUTATIONAL MODELING. JRNL REF PROTEINS V. 75 977 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19089956 JRNL DOI 10.1002/PROT.22310 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 299095.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 32340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3226 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4282 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 488 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 32.84 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GAL2.PAR REMARK 3 PARAMETER FILE 4 : GLC.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : PGE_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : GAL2.TOP REMARK 3 TOPOLOGY FILE 4 : GLC.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : PGE_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290024531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1R8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30-35%(W/V) PEG1500 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 HIS A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 LYS A 398 REMARK 465 ASN A 399 REMARK 465 ALA B 1 REMARK 465 HIS B 2 REMARK 465 ARG B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 ASN B 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 397 CA C O CB CG CD1 CD2 REMARK 470 PHE A 397 CE1 CE2 CZ REMARK 470 LYS B 398 CA C O CB CG CD CE REMARK 470 LYS B 398 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 288 CG ASN A 288 ND2 -0.172 REMARK 500 ASN B 288 CG ASN B 288 ND2 -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 396 C - N - CA ANGL. DEV. = 18.0 DEGREES REMARK 500 PRO B 396 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 47.37 -79.59 REMARK 500 TRP A 115 126.84 -33.07 REMARK 500 GLN A 121 57.27 -143.85 REMARK 500 GLU A 321 72.58 50.52 REMARK 500 ALA A 323 35.60 -145.76 REMARK 500 ASP A 359 -70.97 -99.26 REMARK 500 PRO B 73 47.68 -78.45 REMARK 500 TRP B 115 126.18 -33.00 REMARK 500 GLN B 121 55.75 -142.73 REMARK 500 GLU B 321 73.10 49.63 REMARK 500 ALA B 323 35.99 -145.50 REMARK 500 ARG B 332 44.01 -106.36 REMARK 500 ASP B 359 -71.30 -98.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1397 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 272 OD1 REMARK 620 2 ASP A 274 OD1 85.9 REMARK 620 3 HIS A 276 O 88.0 94.7 REMARK 620 4 ASN A 278 OD1 91.4 176.6 87.2 REMARK 620 5 SER A 367 O 173.5 94.4 85.5 88.5 REMARK 620 6 ASP A 370 OD2 98.6 93.9 169.5 84.6 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 272 OD1 REMARK 620 2 ASP B 274 OD1 84.3 REMARK 620 3 HIS B 276 O 89.6 95.0 REMARK 620 4 ASN B 278 OD1 92.2 172.9 91.2 REMARK 620 5 SER B 367 O 174.8 92.0 87.0 91.7 REMARK 620 6 ASP B 370 OD2 96.0 89.8 172.9 84.3 87.6 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UR0 RELATED DB: PDB REMARK 900 THE STRUCTURE OF ENDO-BETA-1,4-GALACTANASE FROM BACILLUS REMARK 900 LICHENIFORMIS IN COMPLEX WITH TWO OLIGOSACCHARIDE PRODUCTS. REMARK 900 RELATED ID: 1UR4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF ENDO-BETA-1,4-GALACTANASE FROM BACILLUS REMARK 900 LICHENIFORMIS IN COMPLEX WITH TWO OLIGOSACCHARIDE PRODUCTS. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A CONFLICT BETWEEN THE 2CCR SEQUENCE AND REMARK 999 RELATED UNP SEQUENCE: REMARK 999 CONFLICT: 2CCR HIS:2:A - UNP ALA:2:A Q65CX5 REMARK 999 CONFLICT: 2CCR HIS:2:B - UNP ALA:2:B Q65CX5 DBREF 2CCR A 1 399 UNP Q65CX5 GANA_BACLD 26 424 DBREF 2CCR B 1 399 UNP Q65CX5 GANA_BACLD 26 424 SEQRES 1 A 399 ALA HIS ARG ASP SER GLY THR ALA LYS SER GLY LEU TYR SEQRES 2 A 399 VAL GLU LYS VAL SER GLY LEU ARG LYS ASP PHE ILE LYS SEQRES 3 A 399 GLY VAL ASP VAL SER SER ILE ILE ALA LEU GLU GLU SER SEQRES 4 A 399 GLY VAL ALA PHE TYR ASN GLU SER GLY LYS LYS GLN ASP SEQRES 5 A 399 ILE PHE LYS THR LEU LYS GLU ALA GLY VAL ASN TYR VAL SEQRES 6 A 399 ARG VAL ARG ILE TRP ASN ASP PRO TYR ASP ALA ASN GLY SEQRES 7 A 399 ASN GLY TYR GLY GLY GLY ASN ASN ASP LEU GLU LYS ALA SEQRES 8 A 399 ILE GLN ILE GLY LYS ARG ALA THR ALA ASN GLY MET LYS SEQRES 9 A 399 LEU LEU ALA ASP PHE HIS TYR SER ASP PHE TRP ALA ASP SEQRES 10 A 399 PRO ALA LYS GLN LYS ALA PRO LYS ALA TRP ALA ASN LEU SEQRES 11 A 399 ASN PHE GLU ASP LYS LYS THR ALA LEU TYR GLN TYR THR SEQRES 12 A 399 LYS GLN SER LEU LYS ALA MET LYS ALA ALA GLY ILE ASP SEQRES 13 A 399 ILE GLY MET VAL GLN VAL GLY ASN GLU THR ASN GLY GLY SEQRES 14 A 399 LEU ALA GLY GLU THR ASP TRP ALA LYS MET SER GLN LEU SEQRES 15 A 399 PHE ASN ALA GLY SER GLN ALA VAL ARG GLU THR ASP SER SEQRES 16 A 399 ASN ILE LEU VAL ALA LEU HIS PHE THR ASN PRO GLU THR SEQRES 17 A 399 SER GLY ARG TYR ALA TRP ILE ALA GLU THR LEU HIS ARG SEQRES 18 A 399 HIS HIS VAL ASP TYR ASP VAL PHE ALA SER SER TYR TYR SEQRES 19 A 399 PRO PHE TRP HIS GLY THR LEU LYS ASN LEU THR SER VAL SEQRES 20 A 399 LEU THR SER VAL ALA ASP THR TYR GLY LYS LYS VAL MET SEQRES 21 A 399 VAL ALA GLU THR SER TYR THR TYR THR ALA GLU ASP GLY SEQRES 22 A 399 ASP GLY HIS GLY ASN THR ALA PRO LYS ASN GLY GLN THR SEQRES 23 A 399 LEU ASN ASN PRO VAL THR VAL GLN GLY GLN ALA ASN ALA SEQRES 24 A 399 VAL ARG ASP VAL ILE GLN ALA VAL SER ASP VAL GLY GLU SEQRES 25 A 399 ALA GLY ILE GLY VAL PHE TYR TRP GLU PRO ALA TRP ILE SEQRES 26 A 399 PRO VAL GLY PRO ALA HIS ARG LEU GLU LYS ASN LYS ALA SEQRES 27 A 399 LEU TRP GLU THR TYR GLY SER GLY TRP ALA THR SER TYR SEQRES 28 A 399 ALA ALA GLU TYR ASP PRO GLU ASP ALA GLY LYS TRP PHE SEQRES 29 A 399 GLY GLY SER ALA VAL ASP ASN GLN ALA LEU PHE ASP PHE SEQRES 30 A 399 LYS GLY ARG PRO LEU PRO SER LEU HIS VAL PHE GLN TYR SEQRES 31 A 399 VAL ASP THR GLY THR PRO PHE LYS ASN SEQRES 1 B 399 ALA HIS ARG ASP SER GLY THR ALA LYS SER GLY LEU TYR SEQRES 2 B 399 VAL GLU LYS VAL SER GLY LEU ARG LYS ASP PHE ILE LYS SEQRES 3 B 399 GLY VAL ASP VAL SER SER ILE ILE ALA LEU GLU GLU SER SEQRES 4 B 399 GLY VAL ALA PHE TYR ASN GLU SER GLY LYS LYS GLN ASP SEQRES 5 B 399 ILE PHE LYS THR LEU LYS GLU ALA GLY VAL ASN TYR VAL SEQRES 6 B 399 ARG VAL ARG ILE TRP ASN ASP PRO TYR ASP ALA ASN GLY SEQRES 7 B 399 ASN GLY TYR GLY GLY GLY ASN ASN ASP LEU GLU LYS ALA SEQRES 8 B 399 ILE GLN ILE GLY LYS ARG ALA THR ALA ASN GLY MET LYS SEQRES 9 B 399 LEU LEU ALA ASP PHE HIS TYR SER ASP PHE TRP ALA ASP SEQRES 10 B 399 PRO ALA LYS GLN LYS ALA PRO LYS ALA TRP ALA ASN LEU SEQRES 11 B 399 ASN PHE GLU ASP LYS LYS THR ALA LEU TYR GLN TYR THR SEQRES 12 B 399 LYS GLN SER LEU LYS ALA MET LYS ALA ALA GLY ILE ASP SEQRES 13 B 399 ILE GLY MET VAL GLN VAL GLY ASN GLU THR ASN GLY GLY SEQRES 14 B 399 LEU ALA GLY GLU THR ASP TRP ALA LYS MET SER GLN LEU SEQRES 15 B 399 PHE ASN ALA GLY SER GLN ALA VAL ARG GLU THR ASP SER SEQRES 16 B 399 ASN ILE LEU VAL ALA LEU HIS PHE THR ASN PRO GLU THR SEQRES 17 B 399 SER GLY ARG TYR ALA TRP ILE ALA GLU THR LEU HIS ARG SEQRES 18 B 399 HIS HIS VAL ASP TYR ASP VAL PHE ALA SER SER TYR TYR SEQRES 19 B 399 PRO PHE TRP HIS GLY THR LEU LYS ASN LEU THR SER VAL SEQRES 20 B 399 LEU THR SER VAL ALA ASP THR TYR GLY LYS LYS VAL MET SEQRES 21 B 399 VAL ALA GLU THR SER TYR THR TYR THR ALA GLU ASP GLY SEQRES 22 B 399 ASP GLY HIS GLY ASN THR ALA PRO LYS ASN GLY GLN THR SEQRES 23 B 399 LEU ASN ASN PRO VAL THR VAL GLN GLY GLN ALA ASN ALA SEQRES 24 B 399 VAL ARG ASP VAL ILE GLN ALA VAL SER ASP VAL GLY GLU SEQRES 25 B 399 ALA GLY ILE GLY VAL PHE TYR TRP GLU PRO ALA TRP ILE SEQRES 26 B 399 PRO VAL GLY PRO ALA HIS ARG LEU GLU LYS ASN LYS ALA SEQRES 27 B 399 LEU TRP GLU THR TYR GLY SER GLY TRP ALA THR SER TYR SEQRES 28 B 399 ALA ALA GLU TYR ASP PRO GLU ASP ALA GLY LYS TRP PHE SEQRES 29 B 399 GLY GLY SER ALA VAL ASP ASN GLN ALA LEU PHE ASP PHE SEQRES 30 B 399 LYS GLY ARG PRO LEU PRO SER LEU HIS VAL PHE GLN TYR SEQRES 31 B 399 VAL ASP THR GLY THR PRO PHE LYS ASN HET GAL C 1 12 HET GAL C 2 11 HET GAL C 3 11 HET GAL D 1 12 HET GAL D 2 11 HET GAL E 1 12 HET GAL E 2 11 HET GAL E 3 11 HET GAL F 1 12 HET GAL F 2 11 HET CA A1397 1 HET PGE B1398 10 HET PGE B1399 10 HET CA B1400 1 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 GAL 10(C6 H12 O6) FORMUL 7 CA 2(CA 2+) FORMUL 8 PGE 2(C6 H14 O4) FORMUL 11 HOH *154(H2 O) HELIX 1 1 SER A 32 SER A 39 1 8 HELIX 2 2 ASP A 52 ALA A 60 1 9 HELIX 3 3 ASP A 87 ASN A 101 1 15 HELIX 4 4 PRO A 124 ALA A 128 5 5 HELIX 5 5 ASN A 131 ALA A 153 1 23 HELIX 6 6 ASP A 175 ASP A 194 1 20 HELIX 7 7 GLY A 210 HIS A 222 1 13 HELIX 8 8 THR A 240 GLY A 256 1 17 HELIX 9 9 THR A 292 ASP A 309 1 18 HELIX 10 10 PRO A 329 HIS A 331 5 3 HELIX 11 11 ARG A 332 GLY A 344 1 13 HELIX 12 12 THR A 349 TYR A 355 5 7 HELIX 13 13 ASP A 359 PHE A 364 1 6 HELIX 14 14 VAL A 369 ALA A 373 5 5 HELIX 15 15 LEU A 382 LEU A 385 5 4 HELIX 16 16 HIS A 386 GLY A 394 1 9 HELIX 17 17 SER B 32 SER B 39 1 8 HELIX 18 18 ASP B 52 ALA B 60 1 9 HELIX 19 19 ASP B 87 ASN B 101 1 15 HELIX 20 20 PRO B 124 ALA B 128 5 5 HELIX 21 21 ASN B 131 ALA B 153 1 23 HELIX 22 22 ASP B 175 ASP B 194 1 20 HELIX 23 23 GLY B 210 HIS B 222 1 13 HELIX 24 24 THR B 240 GLY B 256 1 17 HELIX 25 25 THR B 292 ASP B 309 1 18 HELIX 26 26 PRO B 329 HIS B 331 5 3 HELIX 27 27 ARG B 332 GLY B 344 1 13 HELIX 28 28 THR B 349 TYR B 355 5 7 HELIX 29 29 ASP B 359 PHE B 364 1 6 HELIX 30 30 VAL B 369 ALA B 373 5 5 HELIX 31 31 LEU B 382 LEU B 385 5 4 HELIX 32 32 HIS B 386 GLY B 394 1 9 SHEET 1 AA10 ILE A 25 ASP A 29 0 SHEET 2 AA10 GLY A 314 TRP A 320 1 O ILE A 315 N ILE A 25 SHEET 3 AA10 LYS A 258 GLU A 263 1 O VAL A 259 N ILE A 315 SHEET 4 AA10 VAL A 228 SER A 232 1 O PHE A 229 N MET A 260 SHEET 5 AA10 LEU A 198 PHE A 203 1 O VAL A 199 N VAL A 228 SHEET 6 AA10 ILE A 157 VAL A 162 1 O GLY A 158 N LEU A 198 SHEET 7 AA10 LYS A 104 PHE A 109 1 O LEU A 105 N GLY A 158 SHEET 8 AA10 TYR A 64 ILE A 69 1 O VAL A 65 N LEU A 106 SHEET 9 AA10 ILE A 25 ASP A 29 1 O VAL A 28 N ARG A 66 SHEET 10 AA10 ILE A 25 ASP A 29 0 SHEET 1 BA10 ILE B 25 ASP B 29 0 SHEET 2 BA10 GLY B 314 TRP B 320 1 O ILE B 315 N ILE B 25 SHEET 3 BA10 LYS B 258 GLU B 263 1 O VAL B 259 N ILE B 315 SHEET 4 BA10 VAL B 228 SER B 232 1 O PHE B 229 N MET B 260 SHEET 5 BA10 LEU B 198 PHE B 203 1 O VAL B 199 N VAL B 228 SHEET 6 BA10 ILE B 157 VAL B 162 1 O GLY B 158 N LEU B 198 SHEET 7 BA10 LYS B 104 PHE B 109 1 O LEU B 105 N GLY B 158 SHEET 8 BA10 TYR B 64 ILE B 69 1 O VAL B 65 N LEU B 106 SHEET 9 BA10 ILE B 25 ASP B 29 1 O VAL B 28 N ARG B 66 SHEET 10 BA10 ILE B 25 ASP B 29 0 LINK O4 GAL C 1 C1 GAL C 2 1555 1555 1.41 LINK O4 GAL C 2 C1 GAL C 3 1555 1555 1.42 LINK O4 GAL D 1 C1 GAL D 2 1555 1555 1.42 LINK O4 GAL E 1 C1 GAL E 2 1555 1555 1.41 LINK O4 GAL E 2 C1 GAL E 3 1555 1555 1.43 LINK O4 GAL F 1 C1 GAL F 2 1555 1555 1.45 LINK OD1 ASP A 272 CA CA A1397 1555 1555 2.35 LINK OD1 ASP A 274 CA CA A1397 1555 1555 2.28 LINK O HIS A 276 CA CA A1397 1555 1555 2.37 LINK OD1 ASN A 278 CA CA A1397 1555 1555 2.44 LINK O SER A 367 CA CA A1397 1555 1555 2.39 LINK OD2 ASP A 370 CA CA A1397 1555 1555 2.19 LINK OD1 ASP B 272 CA CA B1400 1555 1555 2.36 LINK OD1 ASP B 274 CA CA B1400 1555 1555 2.36 LINK O HIS B 276 CA CA B1400 1555 1555 2.30 LINK OD1 ASN B 278 CA CA B1400 1555 1555 2.37 LINK O SER B 367 CA CA B1400 1555 1555 2.37 LINK OD2 ASP B 370 CA CA B1400 1555 1555 2.27 CISPEP 1 ALA A 280 PRO A 281 0 -2.25 CISPEP 2 ALA B 280 PRO B 281 0 -1.18 CRYST1 50.370 80.640 104.440 90.00 99.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019853 0.000000 0.003248 0.00000 SCALE2 0.000000 0.012401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009702 0.00000 MTRIX1 1 -0.156710 -0.899790 0.407220 19.08499 1 MTRIX2 1 0.677690 -0.397900 -0.618400 55.48232 1 MTRIX3 1 0.718460 0.179060 0.672130 -15.81425 1