PDB Short entry for 2CFZ HEADER HYDROLASE 26-FEB-06 2CFZ TITLE CRYSTAL STRUCTURE OF SDSA1, AN ALKYLSULFATASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA, IN COMPLEX WITH 1-DODECANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDS HYDROLASE SDSA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SDSA21 PROBABLE BETA-LACTAMASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 15692; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.HAGELUEKEN,T.M.ADAMS,L.WIEHLMANN,U.WIDOW,H.KOLMAR,B.TUEMMLER, AUTHOR 2 D.W.HEINZ,W.-D.SCHUBERT REVDAT 6 13-DEC-23 2CFZ 1 REMARK LINK REVDAT 5 24-JUL-19 2CFZ 1 REMARK REVDAT 4 28-SEP-11 2CFZ 1 KEYWDS JRNL REMARK HET REVDAT 4 2 1 FORMUL LINK SITE HETATM REVDAT 3 13-JUL-11 2CFZ 1 VERSN REVDAT 2 24-FEB-09 2CFZ 1 VERSN REVDAT 1 26-APR-06 2CFZ 0 JRNL AUTH G.HAGELUEKEN,T.M.ADAMS,L.WIEHLMANN,U.WIDOW,H.KOLMAR, JRNL AUTH 2 B.TUMMLER,D.W.HEINZ,W.-D.SCHUBERT JRNL TITL THE CRYSTAL STRUCTURE OF SDSA1, AN ALKYLSULFATASE FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA, DEFINES A THIRD CLASS OF SULFATASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 7631 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16684886 JRNL DOI 10.1073/PNAS.0510501103 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 633 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5406 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7357 ; 1.434 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 6.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 284 ;36.761 ;23.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 879 ;16.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;19.669 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 767 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4331 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2596 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3671 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 569 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 132 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 57 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3414 ; 2.500 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5293 ; 3.259 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2293 ; 3.042 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2060 ; 4.186 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 523 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9530 23.0490 173.3860 REMARK 3 T TENSOR REMARK 3 T11: -0.0931 T22: -0.1137 REMARK 3 T33: -0.1794 T12: 0.0051 REMARK 3 T13: 0.0089 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3068 L22: 0.2373 REMARK 3 L33: 0.3105 L12: 0.1128 REMARK 3 L13: 0.0412 L23: 0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0550 S13: 0.0116 REMARK 3 S21: 0.0387 S22: -0.0217 S23: -0.0075 REMARK 3 S31: -0.0038 S32: -0.0025 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 531 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8760 50.5780 151.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: -0.0792 REMARK 3 T33: -0.0981 T12: 0.0516 REMARK 3 T13: 0.0226 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2888 L22: 1.1488 REMARK 3 L33: 1.0220 L12: 0.1832 REMARK 3 L13: 0.0697 L23: -0.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0593 S13: 0.1025 REMARK 3 S21: 0.0805 S22: 0.0529 S23: 0.0164 REMARK 3 S31: -0.3053 S32: -0.0163 S33: -0.0577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290027926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8126 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2CG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG4000, 10% ISOPROPANOL, 0.2M REMARK 280 LICL, 0.2M CITRATE PH6, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 245.06267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.53133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.79700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.26567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 306.32833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 245.06267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 122.53133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.26567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 183.79700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 306.32833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 306.32833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 PRO A 525 REMARK 465 THR A 526 REMARK 465 MET A 527 REMARK 465 LYS A 528 REMARK 465 ALA A 529 REMARK 465 SER A 656 REMARK 465 GLU A 657 REMARK 465 GLY A 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 75 N REMARK 470 LYS A 655 CA C O CB CG CD CE REMARK 470 LYS A 655 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 348 O HOH A 2367 1.55 REMARK 500 NH2 ARG A 348 OE2 GLU A 353 2.19 REMARK 500 OE1 GLU A 338 O HOH A 2362 2.19 REMARK 500 OD1 ASP A 481 O HOH A 2501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 441 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 441 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 -176.33 -177.31 REMARK 500 ASP A 138 165.12 72.35 REMARK 500 THR A 139 13.18 -146.09 REMARK 500 LEU A 140 -169.74 69.21 REMARK 500 ALA A 170 58.71 -94.29 REMARK 500 VAL A 209 -62.29 -91.91 REMARK 500 ALA A 238 -63.25 73.18 REMARK 500 THR A 279 -105.82 -98.91 REMARK 500 ALA A 298 -126.10 44.77 REMARK 500 ARG A 335 -59.53 -8.04 REMARK 500 ARG A 335 -44.64 -26.04 REMARK 500 ASN A 345 -166.71 64.65 REMARK 500 GLN A 397 33.92 -97.73 REMARK 500 HIS A 405 -69.47 -108.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2198 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2211 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HIS A 171 ND1 100.0 REMARK 620 3 GLU A 280 OE2 116.7 101.0 REMARK 620 4 GLU A 299 OE2 84.3 173.3 81.5 REMARK 620 5 HOH A3001 O 121.4 99.8 112.5 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD2 REMARK 620 2 HIS A 174 NE2 91.4 REMARK 620 3 GLU A 299 OE2 174.9 90.4 REMARK 620 4 HIS A 344 NE2 90.0 107.8 93.9 REMARK 620 5 HOH A3001 O 87.8 107.5 87.1 144.7 REMARK 620 N 1 2 3 4 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DO A 1655 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1657 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1658 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CFU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SDSA1, AN ALKYLSULFATASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA, IN COMPLEX WITH 1-DECANE-SULFONIC-ACID. REMARK 900 RELATED ID: 2CG2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SDSA1, AN ALKYLSULFATASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA, IN COMPLEX WITH SULFATE. REMARK 900 RELATED ID: 2CG3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SDSA1, AN ALKYLSULFATASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA. DBREF 2CFZ A 1 658 UNP Q9I5I9 Q9I5I9_PSEAE 1 658 SEQRES 1 A 658 MET SER ARG LEU LEU ALA LEU LEU ALA LEU ALA PRO LEU SEQRES 2 A 658 LEU ALA GLY ALA ALA GLU THR THR ALA PRO LYS PRO PRO SEQRES 3 A 658 SER ALA PHE THR VAL GLU ALA GLN ARG ARG VAL GLU ALA SEQRES 4 A 658 GLU LEU PRO PHE ALA ASP ARG ALA ASP PHE GLU ARG ALA SEQRES 5 A 658 ASP ARG GLY LEU ILE ARG ARG PRO GLU ARG LEU LEU ILE SEQRES 6 A 658 ARG ASN PRO ASP GLY SER VAL ALA TRP GLN LEU GLY GLY SEQRES 7 A 658 TYR ASP PHE LEU LEU ASP GLY LYS PRO ARG ASP SER ILE SEQRES 8 A 658 ASN PRO SER LEU GLN ARG GLN ALA LEU LEU ASN LEU LYS SEQRES 9 A 658 TYR GLY LEU PHE GLU VAL ALA GLU GLY ILE TYR GLN VAL SEQRES 10 A 658 ARG GLY PHE ASP LEU ALA ASN ILE THR PHE ILE ARG GLY SEQRES 11 A 658 ASP SER GLY TRP ILE VAL VAL ASP THR LEU THR THR PRO SEQRES 12 A 658 ALA THR ALA ARG ALA ALA TYR GLU LEU VAL SER ARG GLU SEQRES 13 A 658 LEU GLY GLU ARG PRO ILE ARG THR VAL ILE TYR SER HIS SEQRES 14 A 658 ALA HIS ALA ASP HIS PHE GLY GLY VAL ARG GLY LEU VAL SEQRES 15 A 658 GLU PRO GLN GLN VAL ALA SER GLY ALA VAL GLN ILE ILE SEQRES 16 A 658 ALA PRO ALA GLY PHE MET GLU ALA ALA ILE LYS GLU ASN SEQRES 17 A 658 VAL LEU ALA GLY ASN ALA MET MET ARG ARG ALA THR TYR SEQRES 18 A 658 GLN TYR GLY THR GLN LEU PRO LYS GLY PRO GLN GLY GLN SEQRES 19 A 658 VAL ASP MET ALA ILE GLY LYS GLY LEU ALA ARG GLY PRO SEQRES 20 A 658 LEU SER LEU LEU ALA PRO THR ARG LEU ILE GLU GLY GLU SEQRES 21 A 658 GLY GLU ASP LEU VAL LEU ASP GLY VAL PRO PHE THR PHE SEQRES 22 A 658 GLN ASN THR PRO GLY THR GLU SER PRO ALA GLU MET ASN SEQRES 23 A 658 ILE TRP LEU PRO ARG GLN LYS ALA LEU LEU MET ALA GLU SEQRES 24 A 658 ASN VAL VAL GLY THR LEU HIS ASN LEU TYR THR LEU ARG SEQRES 25 A 658 GLY ALA GLU VAL ARG ASP ALA LEU GLY TRP SER LYS TYR SEQRES 26 A 658 ILE ASN GLN ALA LEU HIS ARG PHE GLY ARG GLN ALA GLU SEQRES 27 A 658 VAL MET PHE ALA VAL HIS ASN TRP PRO ARG TRP GLY ASN SEQRES 28 A 658 ALA GLU ILE VAL GLU VAL LEU GLU LYS GLN ARG ASP LEU SEQRES 29 A 658 TYR GLY TYR LEU HIS ASP GLN THR LEU HIS LEU ALA ASN SEQRES 30 A 658 GLN GLY VAL THR ILE GLY GLN VAL HIS ASN ARG LEU ARG SEQRES 31 A 658 LEU PRO PRO SER LEU ASP GLN GLU TRP TYR ASP ARG GLY SEQRES 32 A 658 TYR HIS GLY SER VAL SER HIS ASN ALA ARG ALA VAL LEU SEQRES 33 A 658 ASN ARG TYR LEU GLY TYR TYR ASP GLY ASN PRO ALA THR SEQRES 34 A 658 LEU ASP PRO LEU SER PRO GLU ASP SER ALA GLY ARG TYR SEQRES 35 A 658 VAL GLU TYR MET GLY GLY ALA GLU ARG LEU LEU GLU GLN SEQRES 36 A 658 ALA ARG ALA SER TYR ALA ARG GLY GLU TYR ARG TRP VAL SEQRES 37 A 658 VAL GLU VAL VAL ASN ARG LEU VAL PHE ALA GLU PRO ASP SEQRES 38 A 658 ASN ARG ALA ALA ARG GLU LEU GLN ALA ASP ALA LEU GLU SEQRES 39 A 658 GLN LEU GLY TYR GLN ALA GLU ASN ALA GLY TRP ARG ASN SEQRES 40 A 658 SER TYR LEU SER ALA ALA TYR GLU LEU ARG HIS GLY VAL SEQRES 41 A 658 PRO ARG ASP GLN PRO THR MET LYS ALA GLY SER ALA ASP SEQRES 42 A 658 ALA LEU ALA ALA MET ASP THR GLY LEU LEU PHE ASP TYR SEQRES 43 A 658 LEU GLY VAL ARG LEU ASP ALA GLY ALA ALA GLU GLY LYS SEQRES 44 A 658 ALA LEU SER ILE ASN LEU ARG LEU PRO ASP ILE GLY GLU SEQRES 45 A 658 ASN TYR LEU LEU GLU LEU LYS ASN SER HIS LEU ASN ASN SEQRES 46 A 658 LEU ARG GLY VAL GLN SER GLU ASP ALA GLY GLN THR VAL SEQRES 47 A 658 SER ILE ASP ARG ALA ASP LEU ASN ARG LEU LEU LEU LYS SEQRES 48 A 658 GLU VAL SER ALA VAL ARG LEU VAL PHE GLU GLY LYS LEU SEQRES 49 A 658 LYS SER SER GLY ASN PRO LEU LEU LEU GLY GLN LEU PHE SEQRES 50 A 658 GLY MET LEU GLY ASP PHE ASP PHE TRP PHE ASP ILE VAL SEQRES 51 A 658 THR PRO ALA ALA LYS SER GLU GLY HET 1DO A1655 26 HET PEG A1656 7 HET PEG A1657 7 HET PEG A1658 7 HET ZN A1001 1 HET ZN A1002 1 HETNAM 1DO 1-DODECANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION FORMUL 2 1DO C12 H26 O FORMUL 3 PEG 3(C4 H10 O3) FORMUL 6 ZN 2(ZN 2+) FORMUL 8 HOH *633(H2 O) HELIX 1 1 ALA A 28 GLU A 40 1 13 HELIX 2 2 ALA A 47 ASP A 53 1 7 HELIX 3 3 PRO A 93 LEU A 101 1 9 HELIX 4 4 PRO A 143 LEU A 157 1 15 HELIX 5 5 PRO A 184 SER A 189 1 6 HELIX 6 6 PHE A 200 ILE A 205 1 6 HELIX 7 7 GLY A 212 GLN A 222 1 11 HELIX 8 8 ALA A 319 ARG A 332 1 14 HELIX 9 9 ASN A 351 ASN A 377 1 27 HELIX 10 10 VAL A 408 LEU A 420 1 13 HELIX 11 11 PRO A 435 TYR A 445 1 11 HELIX 12 12 ALA A 449 ALA A 461 1 13 HELIX 13 13 TYR A 465 ALA A 478 1 14 HELIX 14 14 ARG A 483 GLN A 499 1 17 HELIX 15 15 ALA A 503 HIS A 518 1 16 HELIX 16 16 ASP A 533 ALA A 537 1 5 HELIX 17 17 THR A 540 ARG A 550 1 11 HELIX 18 18 ALA A 553 ALA A 556 1 4 HELIX 19 19 ARG A 602 LEU A 609 1 8 HELIX 20 20 ALA A 615 PHE A 620 1 6 HELIX 21 21 LEU A 632 GLY A 638 1 7 SHEET 1 AA 8 LEU A 56 ARG A 58 0 SHEET 2 AA 8 GLY A 106 ALA A 111 -1 O LEU A 107 N ILE A 57 SHEET 3 AA 8 ILE A 114 ARG A 118 -1 O ILE A 114 N VAL A 110 SHEET 4 AA 8 ILE A 125 ARG A 129 -1 O ILE A 125 N VAL A 117 SHEET 5 AA 8 TRP A 134 VAL A 137 -1 O ILE A 135 N ILE A 128 SHEET 6 AA 8 ILE A 162 ILE A 166 1 N ARG A 163 O TRP A 134 SHEET 7 AA 8 GLN A 193 PRO A 197 1 O GLN A 193 N VAL A 165 SHEET 8 AA 8 ARG A 255 ILE A 257 1 O ARG A 255 N ALA A 196 SHEET 1 AB 2 LEU A 64 ARG A 66 0 SHEET 2 AB 2 VAL A 72 GLN A 75 -1 N ALA A 73 O ILE A 65 SHEET 1 AC 6 GLY A 261 LEU A 266 0 SHEET 2 AC 6 VAL A 269 ASN A 275 -1 O VAL A 269 N LEU A 266 SHEET 3 AC 6 MET A 285 LEU A 289 -1 O ASN A 286 N GLN A 274 SHEET 4 AC 6 ALA A 294 LEU A 296 -1 O ALA A 294 N LEU A 289 SHEET 5 AC 6 VAL A 339 PHE A 341 1 O VAL A 339 N LEU A 295 SHEET 6 AC 6 ARG A 348 TRP A 349 -1 O ARG A 348 N MET A 340 SHEET 1 AD 5 HIS A 582 ARG A 587 0 SHEET 2 AD 5 GLU A 572 LYS A 579 -1 O LEU A 575 N LEU A 586 SHEET 3 AD 5 LEU A 561 LEU A 567 -1 O LEU A 561 N LEU A 578 SHEET 4 AD 5 GLN A 596 ILE A 600 1 O GLN A 596 N ASN A 564 SHEET 5 AD 5 LEU A 624 GLY A 628 -1 O LYS A 625 N SER A 599 LINK NE2 HIS A 169 ZN ZN A1002 1555 1555 2.07 LINK ND1 HIS A 171 ZN ZN A1002 1555 1555 2.14 LINK OD2 ASP A 173 ZN ZN A1001 1555 1555 2.14 LINK NE2 HIS A 174 ZN ZN A1001 1555 1555 2.02 LINK OE2 GLU A 280 ZN ZN A1002 1555 1555 2.01 LINK OE2 GLU A 299 ZN ZN A1001 1555 1555 2.09 LINK OE2 GLU A 299 ZN ZN A1002 1555 1555 2.75 LINK NE2 HIS A 344 ZN ZN A1001 1555 1555 2.14 LINK ZN ZN A1001 O HOH A3001 1555 1555 2.11 LINK ZN ZN A1002 O HOH A3001 1555 1555 1.97 CISPEP 1 GLY A 530 SER A 531 0 -13.39 SITE 1 AC1 6 ASP A 173 HIS A 174 GLU A 299 HIS A 344 SITE 2 AC1 6 ZN A1002 HOH A3001 SITE 1 AC2 6 HIS A 169 HIS A 171 GLU A 280 GLU A 299 SITE 2 AC2 6 ZN A1001 HOH A3001 SITE 1 AC3 7 HIS A 171 ASP A 173 MET A 216 TYR A 223 SITE 2 AC3 7 ARG A 245 GLY A 246 ARG A 312 SITE 1 AC4 5 ARG A 441 GLU A 464 TYR A 465 ARG A 466 SITE 2 AC4 5 TRP A 467 SITE 1 AC5 2 GLU A 159 ARG A 483 SITE 1 AC6 6 HIS A 331 ARG A 332 VAL A 589 GLN A 590 SITE 2 AC6 6 GLU A 592 HOH A2632 CRYST1 86.323 86.323 367.594 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011584 0.006688 0.000000 0.00000 SCALE2 0.000000 0.013377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002720 0.00000