PDB Short entry for 2CLS HEADER NUCLEOTIDE BINDING PROTEIN 28-APR-06 2CLS TITLE THE CRYSTAL STRUCTURE OF THE HUMAN RND1 GTPASE IN THE ACTIVE GTP BOUND TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHO6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 5-200; COMPND 5 SYNONYM: RHO FAMILY GTPASE 1, RND1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC1; SOURCE 9 OTHER_DETAILS: MAMMALIAN GENE COLLECTION(MGC) KEYWDS NUCLEOTIDE-BINDING, GTP-BINDING PROTEIN RHO6, MEMBRANE, PRENYLATION, KEYWDS 2 LIPOPROTEIN, GTP-BINDING, CYTOSKELETON, SMALL GTPASE, NUCLEOTIDE KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,X.YANG,S.COLEBROOK,O.GILEADI,F.SOBOTT,J.BRAY,L.WEN HWA, AUTHOR 2 B.MARSDEN,Y.ZHAO,G.SCHOCH,J.ELKINS,J.E.DEBRECZENI,A.P.TURNBULL,F.VON AUTHOR 3 DELFT,C.ARROWSMITH,A.EDWARDS,J.WEIGELT,M.SUNDSTROM,D.DOYLE REVDAT 5 13-DEC-23 2CLS 1 REMARK LINK REVDAT 4 24-JAN-18 2CLS 1 AUTHOR JRNL REVDAT 3 13-JUL-11 2CLS 1 VERSN REVDAT 2 24-FEB-09 2CLS 1 VERSN REVDAT 1 04-MAY-06 2CLS 0 JRNL AUTH A.C.W.PIKE,X.YANG,S.COLEBROOK,O.GILEADI,F.SOBOTT,J.BRAY, JRNL AUTH 2 L.WEN HWA,B.MARSDEN,Y.ZHAO,G.SCHOCH,J.ELKINS,J.E.DEBRECZENI, JRNL AUTH 3 A.P.TURNBULL,F.VON DELFT,C.ARROWSMITH,A.EDWARDS,J.WEIGELT, JRNL AUTH 4 M.SUNDSTROM,D.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF THE HUMAN RND1 GTPASE IN THE ACTIVE JRNL TITL 2 GTP BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 19213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 2.39000 REMARK 3 B33 (A**2) : -3.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.588 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2841 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1823 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3881 ; 1.601 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4472 ; 1.520 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 6.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;35.716 ;24.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;16.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3076 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 554 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1836 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1336 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1475 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.127 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 0.609 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2881 ; 1.035 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1186 ; 1.560 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 2.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 14 A 54 2 REMARK 3 1 B 14 B 54 2 REMARK 3 2 A 62 A 95 2 REMARK 3 2 B 62 B 95 2 REMARK 3 3 A 105 A 187 2 REMARK 3 3 B 105 B 187 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 933 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1068 ; 0.54 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 933 ; 0.11 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1068 ; 0.50 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3687 -24.3918 11.5976 REMARK 3 T TENSOR REMARK 3 T11: -0.2290 T22: -0.1508 REMARK 3 T33: -0.1555 T12: 0.0039 REMARK 3 T13: 0.0110 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.5625 L22: 3.8156 REMARK 3 L33: 5.5587 L12: 1.0683 REMARK 3 L13: 1.2218 L23: 2.5399 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.2428 S13: 0.0328 REMARK 3 S21: 0.2786 S22: -0.1346 S23: 0.1021 REMARK 3 S31: 0.0609 S32: -0.0281 S33: 0.1760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1611 -9.3622 40.2939 REMARK 3 T TENSOR REMARK 3 T11: -0.0955 T22: -0.1041 REMARK 3 T33: -0.1408 T12: -0.0315 REMARK 3 T13: -0.0450 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.3703 L22: 3.1638 REMARK 3 L33: 7.2812 L12: -0.1207 REMARK 3 L13: 1.8248 L23: 0.3010 REMARK 3 S TENSOR REMARK 3 S11: -0.1355 S12: 0.0236 S13: -0.0035 REMARK 3 S21: -0.0462 S22: -0.0064 S23: 0.0136 REMARK 3 S31: 0.1397 S32: 0.3503 S33: 0.1420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20279 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1M7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAI, 20%(W/V)PEG3350, 0.1M REMARK 280 BISTRISPROPANE PH8.5, 10% (V/V) ETHYLENE GLYCOL, 0.5% (V/V) REMARK 280 DIMETHYLSULPHOXIDE, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.20450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.20450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.58400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.88100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.58400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.88100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.20450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.88100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.20450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.58400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.88100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2038 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 CONTROL REARRANGEMENTS OF THE ACTIN CYTOSKELETON REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 ASN A 189 REMARK 465 LYS A 190 REMARK 465 PRO A 191 REMARK 465 SER A 192 REMARK 465 PRO A 193 REMARK 465 LEU A 194 REMARK 465 PRO A 195 REMARK 465 GLN A 196 REMARK 465 LYS A 197 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 VAL A 200 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 PRO B 9 REMARK 465 VAL B 10 REMARK 465 ASN B 189 REMARK 465 LYS B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 PRO B 193 REMARK 465 LEU B 194 REMARK 465 PRO B 195 REMARK 465 GLN B 196 REMARK 465 LYS B 197 REMARK 465 SER B 198 REMARK 465 PRO B 199 REMARK 465 VAL B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 10 CG1 CG2 REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 THR A 56 OG1 CG2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 58 CD OE1 OE2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 SER A 102 OG REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLN A 142 OE1 NE2 REMARK 470 LYS A 143 NZ REMARK 470 LYS A 174 CE NZ REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 VAL B 11 CG1 CG2 REMARK 470 ARG B 13 CD NE CZ NH1 NH2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLN B 59 OE1 NE2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 96 NE CZ NH1 NH2 REMARK 470 GLU B 98 OE1 OE2 REMARK 470 LYS B 105 CD CE NZ REMARK 470 SER B 140 OG REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LEU B 188 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 185 CG - SD - CE ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 46 -78.12 -95.12 REMARK 500 GLU A 57 -71.33 82.31 REMARK 500 PRO A 97 71.34 -58.68 REMARK 500 GLU A 98 -38.71 -178.42 REMARK 500 ASP A 101 -100.71 -49.19 REMARK 500 CYS A 115 118.64 -165.82 REMARK 500 VAL B 46 -74.88 -94.28 REMARK 500 THR B 56 -79.20 -93.48 REMARK 500 ASP B 101 -84.86 -73.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 550 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 THR A 45 OG1 79.6 REMARK 620 3 GTP A 500 O3G 175.3 96.9 REMARK 620 4 GTP A 500 O1B 85.2 164.2 98.1 REMARK 620 5 HOH A2023 O 87.2 84.3 89.3 91.0 REMARK 620 6 HOH A2078 O 82.5 91.6 100.7 90.4 169.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 550 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 27 OG1 REMARK 620 2 THR B 45 OG1 88.3 REMARK 620 3 GTP B 500 O1B 91.9 174.6 REMARK 620 4 GTP B 500 O2G 177.0 93.7 85.9 REMARK 620 5 HOH B2012 O 90.7 85.7 88.8 87.2 REMARK 620 6 HOH B2048 O 94.2 98.3 87.1 87.8 173.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 500 DBREF 2CLS A 3 4 PDB 2CLS 2CLS 3 4 DBREF 2CLS A 5 200 UNP Q92730 RND1_HUMAN 5 200 DBREF 2CLS B 3 4 PDB 2CLS 2CLS 3 4 DBREF 2CLS B 5 200 UNP Q92730 RND1_HUMAN 5 200 SEQRES 1 A 198 SER MET ARG ALA PRO GLN PRO VAL VAL ALA ARG CYS LYS SEQRES 2 A 198 LEU VAL LEU VAL GLY ASP VAL GLN CYS GLY LYS THR ALA SEQRES 3 A 198 MET LEU GLN VAL LEU ALA LYS ASP CYS TYR PRO GLU THR SEQRES 4 A 198 TYR VAL PRO THR VAL PHE GLU ASN TYR THR ALA CYS LEU SEQRES 5 A 198 GLU THR GLU GLU GLN ARG VAL GLU LEU SER LEU TRP ASP SEQRES 6 A 198 THR SER GLY SER PRO TYR TYR ASP ASN VAL ARG PRO LEU SEQRES 7 A 198 CYS TYR SER ASP SER ASP ALA VAL LEU LEU CYS PHE ASP SEQRES 8 A 198 ILE SER ARG PRO GLU THR VAL ASP SER ALA LEU LYS LYS SEQRES 9 A 198 TRP ARG THR GLU ILE LEU ASP TYR CYS PRO SER THR ARG SEQRES 10 A 198 VAL LEU LEU ILE GLY CYS LYS THR ASP LEU ARG THR ASP SEQRES 11 A 198 LEU SER THR LEU MET GLU LEU SER HIS GLN LYS GLN ALA SEQRES 12 A 198 PRO ILE SER TYR GLU GLN GLY CYS ALA ILE ALA LYS GLN SEQRES 13 A 198 LEU GLY ALA GLU ILE TYR LEU GLU GLY SER ALA PHE THR SEQRES 14 A 198 SER GLU LYS SER ILE HIS SER ILE PHE ARG THR ALA SER SEQRES 15 A 198 MET LEU CYS LEU ASN LYS PRO SER PRO LEU PRO GLN LYS SEQRES 16 A 198 SER PRO VAL SEQRES 1 B 198 SER MET ARG ALA PRO GLN PRO VAL VAL ALA ARG CYS LYS SEQRES 2 B 198 LEU VAL LEU VAL GLY ASP VAL GLN CYS GLY LYS THR ALA SEQRES 3 B 198 MET LEU GLN VAL LEU ALA LYS ASP CYS TYR PRO GLU THR SEQRES 4 B 198 TYR VAL PRO THR VAL PHE GLU ASN TYR THR ALA CYS LEU SEQRES 5 B 198 GLU THR GLU GLU GLN ARG VAL GLU LEU SER LEU TRP ASP SEQRES 6 B 198 THR SER GLY SER PRO TYR TYR ASP ASN VAL ARG PRO LEU SEQRES 7 B 198 CYS TYR SER ASP SER ASP ALA VAL LEU LEU CYS PHE ASP SEQRES 8 B 198 ILE SER ARG PRO GLU THR VAL ASP SER ALA LEU LYS LYS SEQRES 9 B 198 TRP ARG THR GLU ILE LEU ASP TYR CYS PRO SER THR ARG SEQRES 10 B 198 VAL LEU LEU ILE GLY CYS LYS THR ASP LEU ARG THR ASP SEQRES 11 B 198 LEU SER THR LEU MET GLU LEU SER HIS GLN LYS GLN ALA SEQRES 12 B 198 PRO ILE SER TYR GLU GLN GLY CYS ALA ILE ALA LYS GLN SEQRES 13 B 198 LEU GLY ALA GLU ILE TYR LEU GLU GLY SER ALA PHE THR SEQRES 14 B 198 SER GLU LYS SER ILE HIS SER ILE PHE ARG THR ALA SER SEQRES 15 B 198 MET LEU CYS LEU ASN LYS PRO SER PRO LEU PRO GLN LYS SEQRES 16 B 198 SER PRO VAL HET GTP A 500 32 HET MG A 550 1 HET GTP B 500 32 HET MG B 550 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *129(H2 O) HELIX 1 1 GLY A 25 ASP A 36 1 12 HELIX 2 2 SER A 71 ASP A 75 5 5 HELIX 3 3 VAL A 77 SER A 83 5 7 HELIX 4 4 SER A 102 CYS A 115 1 14 HELIX 5 5 LYS A 126 THR A 131 5 6 HELIX 6 6 ASP A 132 HIS A 141 1 10 HELIX 7 7 SER A 148 LEU A 159 1 12 HELIX 8 8 SER A 172 LEU A 188 1 17 HELIX 9 9 GLY B 25 ASP B 36 1 12 HELIX 10 10 SER B 71 ASP B 75 5 5 HELIX 11 11 VAL B 77 TYR B 82 5 6 HELIX 12 12 ARG B 96 VAL B 100 5 5 HELIX 13 13 ASP B 101 CYS B 115 1 15 HELIX 14 14 LYS B 126 THR B 131 5 6 HELIX 15 15 ASP B 132 HIS B 141 1 10 HELIX 16 16 SER B 148 LEU B 159 1 12 HELIX 17 17 SER B 172 LEU B 188 1 17 SHEET 1 AA 6 PHE A 47 GLU A 55 0 SHEET 2 AA 6 ARG A 60 THR A 68 -1 O VAL A 61 N LEU A 54 SHEET 3 AA 6 VAL A 11 VAL A 19 1 O ALA A 12 N GLU A 62 SHEET 4 AA 6 ALA A 87 ASP A 93 1 O ALA A 87 N VAL A 17 SHEET 5 AA 6 VAL A 120 CYS A 125 1 O LEU A 121 N LEU A 90 SHEET 6 AA 6 TYR A 164 GLU A 166 1 O LEU A 165 N GLY A 124 SHEET 1 BA 6 PHE B 47 GLU B 55 0 SHEET 2 BA 6 ARG B 60 THR B 68 -1 O VAL B 61 N LEU B 54 SHEET 3 BA 6 ALA B 12 VAL B 19 1 O ALA B 12 N GLU B 62 SHEET 4 BA 6 ALA B 87 ASP B 93 1 O ALA B 87 N VAL B 17 SHEET 5 BA 6 VAL B 120 CYS B 125 1 O LEU B 121 N LEU B 90 SHEET 6 BA 6 TYR B 164 GLU B 166 1 O LEU B 165 N GLY B 124 LINK OG1 THR A 27 MG MG A 550 1555 1555 2.11 LINK OG1 THR A 45 MG MG A 550 1555 1555 2.18 LINK O3G GTP A 500 MG MG A 550 1555 1555 1.93 LINK O1B GTP A 500 MG MG A 550 1555 1555 2.02 LINK MG MG A 550 O HOH A2023 1555 1555 2.15 LINK MG MG A 550 O HOH A2078 1555 1555 2.15 LINK OG1 THR B 27 MG MG B 550 1555 1555 1.89 LINK OG1 THR B 45 MG MG B 550 1555 1555 2.12 LINK O1B GTP B 500 MG MG B 550 1555 1555 2.15 LINK O2G GTP B 500 MG MG B 550 1555 1555 2.12 LINK MG MG B 550 O HOH B2012 1555 1555 2.16 LINK MG MG B 550 O HOH B2048 1555 1555 2.26 SITE 1 AC1 5 THR A 27 THR A 45 GTP A 500 HOH A2023 SITE 2 AC1 5 HOH A2078 SITE 1 AC2 5 THR B 27 THR B 45 GTP B 500 HOH B2012 SITE 2 AC2 5 HOH B2048 SITE 1 AC3 28 VAL A 22 GLN A 23 CYS A 24 GLY A 25 SITE 2 AC3 28 LYS A 26 THR A 27 ALA A 28 TYR A 38 SITE 3 AC3 28 PRO A 39 GLU A 40 THR A 41 TYR A 42 SITE 4 AC3 28 THR A 45 SER A 69 GLY A 70 LYS A 126 SITE 5 AC3 28 ASP A 128 LEU A 129 SER A 168 ALA A 169 SITE 6 AC3 28 PHE A 170 MG A 550 HOH A2004 HOH A2023 SITE 7 AC3 28 HOH A2026 HOH A2078 HOH A2079 HOH A2080 SITE 1 AC4 28 VAL B 22 GLN B 23 CYS B 24 GLY B 25 SITE 2 AC4 28 LYS B 26 THR B 27 ALA B 28 TYR B 38 SITE 3 AC4 28 PRO B 39 GLU B 40 THR B 41 TYR B 42 SITE 4 AC4 28 THR B 45 SER B 69 GLY B 70 LYS B 126 SITE 5 AC4 28 ASP B 128 LEU B 129 SER B 168 ALA B 169 SITE 6 AC4 28 PHE B 170 MG B 550 HOH B2003 HOH B2012 SITE 7 AC4 28 HOH B2014 HOH B2047 HOH B2048 HOH B2049 CRYST1 67.168 67.762 206.409 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014888 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004845 0.00000 MTRIX1 1 0.002000 -1.000000 -0.001000 -0.25917 1 MTRIX2 1 -0.999000 -0.002000 0.039000 -4.62606 1 MTRIX3 1 -0.039000 0.000000 -0.999000 51.96630 1