PDB Short entry for 2CO5 HEADER VIRAL PROTEIN/WINGED HELIX 25-MAY-06 2CO5 TITLE F93 FROM STIV, A WINGED-HELIX DNA-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL PROTEIN F93; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS; SOURCE 3 ORGANISM_COMMON: STIV; SOURCE 4 ORGANISM_TAXID: 269145; SOURCE 5 STRAIN: ISOLATE YNPRC179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON PLUS (RIL); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEXP14-STIVF93; SOURCE 10 OTHER_DETAILS: STIV WAS ISOLATED FROM SULFOLOBUS SPECIES IN ACIDIC SOURCE 11 HOT SPRINGS (PH 2.9-3.9, 72-92 DEGREES C)IN THE RABBIT CREEK THERMAL SOURCE 12 AREA WITHIN MIDWAY GEYSER BASIN IN YELLOWSTONE NATIONAL PARK, USA. KEYWDS VIRAL PROTEIN-WINGED HELIX COMPLEX, WINGED HELIX, DNA-BINDING, HTH, KEYWDS 2 WHTH, F93, DISULFIDE BOND, STIV, SULFOLOBUS TURRETED ICOSAHEDRAL KEYWDS 3 VIRUS, VIRAL PROTEIN, VIRUS, ARCHAEA, CRENARCHAEA, ARCHAEAL VIRUS, KEYWDS 4 CRENARCHAEAL VIRUS, THERMOPHILIC PROTEIN, THERMOPHILIC VIRUS, KEYWDS 5 SULFOLOBUS, YELLOWSTONE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,D.REITER,C.M.LAWRENCE REVDAT 5 08-MAY-19 2CO5 1 REMARK REVDAT 4 13-JUL-11 2CO5 1 VERSN REVDAT 3 24-FEB-09 2CO5 1 VERSN REVDAT 2 13-NOV-07 2CO5 1 JRNL REVDAT 1 31-MAY-06 2CO5 0 JRNL AUTH E.T.LARSON,B.EILERS,S.MENON,D.REITER,A.ORTMANN,M.J.YOUNG, JRNL AUTH 2 C.M.LAWRENCE JRNL TITL A WINGED-HELIX PROTEIN FROM SULFOLOBUS TURRETED ICOSAHEDRAL JRNL TITL 2 VIRUS POINTS TOWARD STABILIZING DISULFIDE BONDS IN THE JRNL TITL 3 INTRACELLULAR PROTEINS OF A HYPERTHERMOPHILIC VIRUS. JRNL REF VIROLOGY V. 368 249 2007 JRNL REFN ISSN 0042-6822 JRNL PMID 17669459 JRNL DOI 10.1016/J.VIROL.2007.06.040 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.RICE,L.TANG,K.STEDMAN,F.ROBERTO,J.SPUHLER,E.GILLITZER, REMARK 1 AUTH 2 J.E.JOHNSON,T.DOUGLAS,M.YOUNG REMARK 1 TITL THE STRUCTURE OF A THERMOPHILIC ARCHAEAL VIRUS SHOWS A REMARK 1 TITL 2 DOUBLE-STRANDED DNA VIRAL CAPSID TYPE THAT SPANS ALL DOMAINS REMARK 1 TITL 3 OF LIFE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 7716 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15123802 REMARK 1 DOI 10.1073/PNAS.0401773101 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.71000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.322 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1629 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1216 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2179 ; 0.991 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2957 ; 0.789 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 6.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;35.991 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;14.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.730 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1721 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 338 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 338 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1162 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 781 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 842 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 1.994 ; 6.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 2.509 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 9.210 ;36.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 648 ;11.446 ;54.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2277 32.7695 63.0293 REMARK 3 T TENSOR REMARK 3 T11: -0.2078 T22: -0.1059 REMARK 3 T33: -0.1051 T12: -0.0632 REMARK 3 T13: 0.0231 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 14.1314 L22: 12.5129 REMARK 3 L33: 26.2171 L12: -5.1238 REMARK 3 L13: 5.6652 L23: 11.7842 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.8368 S13: -0.9250 REMARK 3 S21: 0.7418 S22: -0.0546 S23: 0.4257 REMARK 3 S31: 0.1188 S32: -0.9239 S33: 0.1103 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2640 24.4186 54.7554 REMARK 3 T TENSOR REMARK 3 T11: -0.1440 T22: 0.0616 REMARK 3 T33: 0.0675 T12: -0.0014 REMARK 3 T13: -0.0178 T23: -0.2077 REMARK 3 L TENSOR REMARK 3 L11: 3.4378 L22: 6.2177 REMARK 3 L33: 7.3208 L12: 2.5352 REMARK 3 L13: 1.1250 L23: 4.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.2537 S12: 0.6993 S13: -1.0540 REMARK 3 S21: -0.2018 S22: 0.3587 S23: -0.4954 REMARK 3 S31: 0.4757 S32: 0.6640 S33: -0.6125 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0726 31.8520 54.2215 REMARK 3 T TENSOR REMARK 3 T11: -0.2510 T22: 0.1272 REMARK 3 T33: -0.0685 T12: -0.0045 REMARK 3 T13: 0.1133 T23: -0.1144 REMARK 3 L TENSOR REMARK 3 L11: 15.1947 L22: 24.9437 REMARK 3 L33: 24.9963 L12: -4.5439 REMARK 3 L13: 11.2707 L23: -10.3665 REMARK 3 S TENSOR REMARK 3 S11: 0.3170 S12: 1.1980 S13: -0.6809 REMARK 3 S21: -1.0047 S22: -0.2259 S23: -1.2138 REMARK 3 S31: 0.8876 S32: 1.3095 S33: -0.0911 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0257 25.9060 64.9281 REMARK 3 T TENSOR REMARK 3 T11: -0.1737 T22: -0.0117 REMARK 3 T33: 0.0142 T12: 0.0398 REMARK 3 T13: -0.0344 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 7.7068 L22: 6.6473 REMARK 3 L33: 5.4161 L12: 2.5481 REMARK 3 L13: -0.0210 L23: 0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.3828 S13: -1.1696 REMARK 3 S21: 0.5543 S22: -0.0103 S23: -0.2378 REMARK 3 S31: 0.5660 S32: 0.5097 S33: -0.1306 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0317 17.3610 59.9388 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0390 REMARK 3 T33: 0.5646 T12: 0.1052 REMARK 3 T13: -0.1140 T23: -0.1674 REMARK 3 L TENSOR REMARK 3 L11: 34.4101 L22: 10.7585 REMARK 3 L33: 5.1402 L12: 8.6967 REMARK 3 L13: 9.8981 L23: -1.9289 REMARK 3 S TENSOR REMARK 3 S11: 1.0711 S12: 0.1719 S13: -3.3220 REMARK 3 S21: -0.0084 S22: -0.0021 S23: -2.0474 REMARK 3 S31: 0.9618 S32: 0.7577 S33: -1.0690 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6562 22.1842 55.3271 REMARK 3 T TENSOR REMARK 3 T11: -0.0625 T22: -0.2007 REMARK 3 T33: 0.1250 T12: -0.0600 REMARK 3 T13: -0.0529 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 87.7111 L22: 60.6344 REMARK 3 L33: 17.5515 L12: -30.7529 REMARK 3 L13: 33.6062 L23: 3.4841 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: -0.4213 S13: -0.6555 REMARK 3 S21: 0.3257 S22: -0.1217 S23: 0.0100 REMARK 3 S31: 1.9412 S32: -1.6999 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7414 33.2388 49.6889 REMARK 3 T TENSOR REMARK 3 T11: -0.1972 T22: -0.1013 REMARK 3 T33: -0.1009 T12: -0.0282 REMARK 3 T13: -0.0005 T23: -0.1078 REMARK 3 L TENSOR REMARK 3 L11: 21.1497 L22: 27.6285 REMARK 3 L33: 19.7020 L12: -8.1168 REMARK 3 L13: 4.0798 L23: -7.1910 REMARK 3 S TENSOR REMARK 3 S11: 0.5315 S12: 1.0834 S13: -0.3423 REMARK 3 S21: -1.2201 S22: -0.4094 S23: 0.6193 REMARK 3 S31: 0.0630 S32: 0.0405 S33: -0.1221 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4863 43.5004 58.7386 REMARK 3 T TENSOR REMARK 3 T11: -0.1006 T22: -0.2008 REMARK 3 T33: -0.2355 T12: -0.0533 REMARK 3 T13: 0.0109 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 10.2321 L22: 4.5065 REMARK 3 L33: 4.8534 L12: -2.7439 REMARK 3 L13: 4.2950 L23: 1.3876 REMARK 3 S TENSOR REMARK 3 S11: -0.2274 S12: 0.4847 S13: 0.2948 REMARK 3 S21: -0.0927 S22: 0.1546 S23: -0.4500 REMARK 3 S31: -0.4656 S32: 0.3906 S33: 0.0728 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 36 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6969 47.5879 55.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: 0.1047 REMARK 3 T33: -0.1317 T12: 0.2041 REMARK 3 T13: -0.0998 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.7741 L22: 18.1392 REMARK 3 L33: 3.9872 L12: 3.4158 REMARK 3 L13: 0.2404 L23: -1.8161 REMARK 3 S TENSOR REMARK 3 S11: -0.2423 S12: 0.4590 S13: 0.2217 REMARK 3 S21: -0.7893 S22: 0.0278 S23: 1.1858 REMARK 3 S31: -1.2183 S32: -1.3333 S33: 0.2146 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0089 40.9324 61.3935 REMARK 3 T TENSOR REMARK 3 T11: -0.1824 T22: -0.0970 REMARK 3 T33: -0.1287 T12: 0.0427 REMARK 3 T13: -0.0707 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 6.7804 L22: 5.0827 REMARK 3 L33: 12.0734 L12: 2.5643 REMARK 3 L13: 0.4066 L23: 5.1796 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.1880 S13: -0.4772 REMARK 3 S21: -0.2962 S22: -0.0994 S23: 0.3291 REMARK 3 S31: -0.0862 S32: -1.0670 S33: 0.0836 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5354 54.8971 63.3442 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: -0.2538 REMARK 3 T33: -0.1416 T12: 0.0663 REMARK 3 T13: -0.0392 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 7.7424 L22: 9.1056 REMARK 3 L33: 16.5269 L12: 2.7508 REMARK 3 L13: 2.1949 L23: -0.9686 REMARK 3 S TENSOR REMARK 3 S11: -0.2220 S12: -0.3555 S13: 0.5149 REMARK 3 S21: -0.2901 S22: 0.3518 S23: 0.3891 REMARK 3 S31: -1.7956 S32: -0.4329 S33: -0.1298 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6487 57.2819 58.8362 REMARK 3 T TENSOR REMARK 3 T11: 0.3816 T22: -0.1858 REMARK 3 T33: -0.0452 T12: 0.1909 REMARK 3 T13: -0.0699 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 22.7338 L22: 8.1711 REMARK 3 L33: 6.8963 L12: 2.6957 REMARK 3 L13: -1.6843 L23: -0.6102 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: 0.2282 S13: 1.8742 REMARK 3 S21: -0.2929 S22: 0.1332 S23: 0.8421 REMARK 3 S31: -1.2162 S32: -1.0032 S33: -0.2165 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9682 47.3508 51.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: -0.0443 REMARK 3 T33: -0.1876 T12: -0.1372 REMARK 3 T13: 0.0874 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 15.7438 L22: 41.7272 REMARK 3 L33: 8.9476 L12: -24.4540 REMARK 3 L13: -2.4347 L23: 2.8024 REMARK 3 S TENSOR REMARK 3 S11: 0.2798 S12: 1.1935 S13: 1.0020 REMARK 3 S21: -0.4225 S22: 0.0504 S23: -1.3491 REMARK 3 S31: -1.6648 S32: 0.7797 S33: -0.3302 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7937 36.7523 48.1151 REMARK 3 T TENSOR REMARK 3 T11: -0.1126 T22: 0.0396 REMARK 3 T33: -0.2366 T12: -0.0479 REMARK 3 T13: 0.0705 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 20.5325 L22: 32.9760 REMARK 3 L33: 0.0486 L12: -5.0045 REMARK 3 L13: -0.8309 L23: 0.8932 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: 1.8088 S13: -0.2049 REMARK 3 S21: -1.4839 S22: -0.5085 S23: -0.4769 REMARK 3 S31: -0.0315 S32: 0.8266 S33: 0.5676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS MOTION DETERMINATION SERVER (J PAINTER & E A REMARK 3 MERRITT (2006) J. APPL. CRYST. 39, 109-111) WAS USED FOR REMARK 3 SELECTION OF OPTIMAL TLS GROUPS USED IN REFINEMENT. REMARK 4 REMARK 4 2CO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1290028872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98789 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I- BEAM REMARK 200 BENT SINGLE CRYSTAL, ASYMETRIC REMARK 200 CUT 12.2 DEGS. REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR, SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION, 9.0-10.5 REMARK 280 MG/ML F93 IN 10 MM TRIS-HCL, PH 8.0, 50 MM NACL, 0.5 MM TCEP REMARK 280 MIXED WITH BUFFER CONTAINING 0.1 M SODIUM ACETATE, PH 4.75-5.0, REMARK 280 0.1 M MAGNESIUM NITRATE HEXAHYDRATE, 16-20% PEG 20,000., VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.19900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.19900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.02500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.29700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.02500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.29700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.19900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.02500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.29700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.19900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.02500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.29700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2009 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 35.50 -96.95 REMARK 500 HIS A 95 -72.56 -61.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 95 HIS A 96 -146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.03 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL 6XHIS TAG WAS ADDED DURING CLONING TO REMARK 999 FACILITATE PURIFICATION DBREF 2CO5 A 1 93 UNP Q6Q0J9 Q6Q0J9_9VIRU 1 93 DBREF 2CO5 B 1 93 UNP Q6Q0J9 Q6Q0J9_9VIRU 1 93 SEQRES 1 A 99 MET LYS ILE ARG LYS TYR MET ARG ILE ASN TYR TYR ILE SEQRES 2 A 99 ILE LEU LYS VAL LEU VAL ILE ASN GLY SER ARG LEU GLU SEQRES 3 A 99 LYS LYS ARG LEU ARG SER GLU ILE LEU LYS ARG PHE ASP SEQRES 4 A 99 ILE ASP ILE SER ASP GLY VAL LEU TYR PRO LEU ILE ASP SEQRES 5 A 99 SER LEU ILE ASP ASP LYS ILE LEU ARG GLU GLU GLU ALA SEQRES 6 A 99 PRO ASP GLY LYS VAL LEU PHE LEU THR GLU LYS GLY MET SEQRES 7 A 99 LYS GLU PHE GLU GLU LEU HIS GLU PHE PHE LYS LYS ILE SEQRES 8 A 99 VAL CYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 MET LYS ILE ARG LYS TYR MET ARG ILE ASN TYR TYR ILE SEQRES 2 B 99 ILE LEU LYS VAL LEU VAL ILE ASN GLY SER ARG LEU GLU SEQRES 3 B 99 LYS LYS ARG LEU ARG SER GLU ILE LEU LYS ARG PHE ASP SEQRES 4 B 99 ILE ASP ILE SER ASP GLY VAL LEU TYR PRO LEU ILE ASP SEQRES 5 B 99 SER LEU ILE ASP ASP LYS ILE LEU ARG GLU GLU GLU ALA SEQRES 6 B 99 PRO ASP GLY LYS VAL LEU PHE LEU THR GLU LYS GLY MET SEQRES 7 B 99 LYS GLU PHE GLU GLU LEU HIS GLU PHE PHE LYS LYS ILE SEQRES 8 B 99 VAL CYS HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *69(H2 O) HELIX 1 1 MET A 7 ASN A 21 1 15 HELIX 2 2 ARG A 29 ASP A 39 1 11 HELIX 3 3 SER A 43 ASP A 57 1 15 HELIX 4 4 THR A 74 CYS A 93 1 20 HELIX 5 5 ARG B 8 ASN B 21 1 14 HELIX 6 6 ARG B 29 ASP B 39 1 11 HELIX 7 7 SER B 43 ASP B 57 1 15 HELIX 8 8 THR B 74 CYS B 93 1 20 SHEET 1 AA 3 ARG A 24 GLU A 26 0 SHEET 2 AA 3 VAL A 70 LEU A 73 -1 O LEU A 71 N LEU A 25 SHEET 3 AA 3 LEU A 60 GLU A 63 -1 O ARG A 61 N PHE A 72 SHEET 1 BA 3 ARG B 24 GLU B 26 0 SHEET 2 BA 3 VAL B 70 LEU B 73 -1 O LEU B 71 N LEU B 25 SHEET 3 BA 3 LEU B 60 GLU B 63 -1 O ARG B 61 N PHE B 72 SSBOND 1 CYS A 93 CYS B 93 1555 1555 2.03 CISPEP 1 PRO A 66 ASP A 67 0 11.69 CRYST1 42.050 102.594 92.398 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010823 0.00000