PDB Short entry for 2CRZ HEADER CELL ADHESION 20-MAY-05 2CRZ TITLE SOLUTION STRUCTURE OF THE FIFTH FNIII DOMAIN OF HUMAN FIBRONECTIN TYPE TITLE 2 III DOMAIN CONTAINING PROTEIN 3A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FNDC3A; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-03; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS FIBRONECTIN TYPE-III DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CRZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CRZ 1 VERSN REVDAT 1 20-NOV-05 2CRZ 0 JRNL AUTH C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH FNIII DOMAIN OF HUMAN JRNL TITL 2 FIBRONECTIN TYPE III DOMAIN CONTAINING PROTEIN 3A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024556. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.09MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9298, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 41 155.04 -38.20 REMARK 500 1 ILE A 51 -37.97 -35.24 REMARK 500 1 GLU A 58 109.24 -49.87 REMARK 500 1 GLN A 61 114.54 -166.60 REMARK 500 1 SER A 71 39.31 70.34 REMARK 500 1 LYS A 96 106.25 -57.64 REMARK 500 1 PRO A 103 3.12 -69.78 REMARK 500 2 CYS A 12 -178.56 -67.27 REMARK 500 2 ILE A 41 143.99 -35.30 REMARK 500 2 GLU A 55 73.68 -117.96 REMARK 500 2 GLU A 58 96.95 -66.41 REMARK 500 2 GLN A 61 108.66 -169.22 REMARK 500 2 THR A 101 -177.42 -66.91 REMARK 500 2 PRO A 103 3.06 -69.72 REMARK 500 3 SER A 2 -44.92 -134.46 REMARK 500 3 LEU A 17 107.60 -47.55 REMARK 500 3 ILE A 41 140.15 -33.73 REMARK 500 3 GLU A 55 69.43 -115.15 REMARK 500 3 GLN A 61 110.67 -167.75 REMARK 500 3 LYS A 96 97.70 -64.10 REMARK 500 3 PRO A 103 3.08 -69.74 REMARK 500 3 SER A 108 104.04 -39.21 REMARK 500 4 ILE A 51 -36.78 -36.02 REMARK 500 4 GLU A 58 94.21 -64.74 REMARK 500 4 GLN A 61 113.95 -166.66 REMARK 500 4 SER A 71 33.46 71.68 REMARK 500 4 LYS A 87 -28.31 -39.06 REMARK 500 4 THR A 101 -178.91 -67.97 REMARK 500 4 PRO A 103 3.08 -69.74 REMARK 500 4 SER A 108 101.52 -41.21 REMARK 500 5 SER A 2 35.36 38.03 REMARK 500 5 ILE A 51 -35.59 -38.84 REMARK 500 5 GLN A 61 117.53 -167.88 REMARK 500 5 LYS A 87 -18.87 -48.81 REMARK 500 5 LYS A 96 106.97 -59.11 REMARK 500 5 PRO A 103 3.15 -69.77 REMARK 500 6 SER A 3 119.06 -37.88 REMARK 500 6 SER A 5 110.91 -166.52 REMARK 500 6 LEU A 17 143.27 -35.25 REMARK 500 6 ILE A 41 140.61 -34.75 REMARK 500 6 ILE A 51 -37.73 -37.87 REMARK 500 6 GLN A 61 113.74 -172.92 REMARK 500 6 LYS A 87 -26.69 -38.55 REMARK 500 6 LYS A 96 106.46 -58.69 REMARK 500 6 PRO A 103 3.19 -69.83 REMARK 500 7 SER A 3 112.21 -39.21 REMARK 500 7 ILE A 41 144.76 -35.68 REMARK 500 7 ILE A 51 -35.48 -35.44 REMARK 500 7 GLN A 61 108.78 -171.92 REMARK 500 7 SER A 71 34.05 71.48 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100947.3 RELATED DB: TARGETDB DBREF 2CRZ A 8 104 UNP Q9Y2H6 FNDC3_HUMAN 597 693 SEQADV 2CRZ GLY A 1 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 2 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 3 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ GLY A 4 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 5 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 6 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ GLY A 7 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 105 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ GLY A 106 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ PRO A 107 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 108 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ SER A 109 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRZ GLY A 110 UNP Q9Y2H6 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY PRO PRO GLY PRO CYS LEU SEQRES 2 A 110 PRO PRO ARG LEU GLN GLY ARG PRO LYS ALA LYS GLU ILE SEQRES 3 A 110 GLN LEU ARG TRP GLY PRO PRO LEU VAL ASP GLY GLY SER SEQRES 4 A 110 PRO ILE SER CYS TYR SER VAL GLU MET SER PRO ILE GLU SEQRES 5 A 110 LYS ASP GLU PRO ARG GLU VAL TYR GLN GLY SER GLU VAL SEQRES 6 A 110 GLU CYS THR VAL SER SER LEU LEU PRO GLY LYS THR TYR SEQRES 7 A 110 SER PHE ARG LEU ARG ALA ALA ASN LYS MET GLY PHE GLY SEQRES 8 A 110 PRO PHE SER GLU LYS CYS ASP ILE THR THR ALA PRO GLY SEQRES 9 A 110 SER GLY PRO SER SER GLY SHEET 1 A 3 ARG A 16 LEU A 17 0 SHEET 2 A 3 GLU A 25 ARG A 29 -1 O ARG A 29 N ARG A 16 SHEET 3 A 3 GLU A 66 SER A 70 -1 O VAL A 69 N ILE A 26 SHEET 1 B 3 ARG A 57 GLY A 62 0 SHEET 2 B 3 CYS A 43 SER A 49 -1 N TYR A 44 O GLY A 62 SHEET 3 B 3 ARG A 83 ALA A 85 -1 O ARG A 83 N SER A 45 SHEET 1 C 4 ARG A 57 GLY A 62 0 SHEET 2 C 4 CYS A 43 SER A 49 -1 N TYR A 44 O GLY A 62 SHEET 3 C 4 THR A 77 PHE A 80 -1 O SER A 79 N SER A 49 SHEET 4 C 4 CYS A 97 THR A 100 -1 O CYS A 97 N PHE A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000