PDB Short entry for 2CSN HEADER PROTEIN KINASE 11-OCT-95 2CSN TITLE BINARY COMPLEX OF CASEIN KINASE-1 WITH CKI7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE RESIDUES 2 - 298; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CASEIN KINASE-1, PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR R.-M.XU,X.CHENG REVDAT 3 14-FEB-24 2CSN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CSN 1 VERSN REVDAT 1 08-MAR-96 2CSN 0 JRNL AUTH R.M.XU,G.CARMEL,J.KURET,X.CHENG JRNL TITL STRUCTURAL BASIS FOR SELECTIVITY OF THE ISOQUINOLINE JRNL TITL 2 SULFONAMIDE FAMILY OF PROTEIN KINASE INHIBITORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 6308 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8692811 JRNL DOI 10.1073/PNAS.93.13.6308 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.-M.XU,G.CARMEL,R.M.SWEET,J.KURET,X.CHEN REMARK 1 TITL CRYSTAL STRUCTURE OF CASEIN KINASE-1, A PHOSPHATE-DIRECTED REMARK 1 TITL 2 PROTEIN KINASE REMARK 1 REF EMBO J. V. 14 1015 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.CARMEL,B.LEICHUS,X.CHENG,S.D.PATTERSON,U.MIRZA,B.T.CHAIT, REMARK 1 AUTH 2 J.KURET REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION, AND PRELIMINARY REMARK 1 TITL 2 X-RAY ANALYSIS OF CASEIN KINASE-1 FROM SCHIZOSACCHAROMYCES REMARK 1 TITL 3 POMBE REMARK 1 REF J.BIOL.CHEM. V. 269 7304 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 16391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.630 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.48 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.350 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL (DENZO) REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18581 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.01333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.01333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.02667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -62.66 69.72 REMARK 500 ARG A 130 -0.81 67.32 REMARK 500 ASN A 146 42.62 -102.28 REMARK 500 ASP A 154 93.11 65.72 REMARK 500 SER A 179 -89.03 -102.50 REMARK 500 LEU A 221 -79.36 -76.27 REMARK 500 ASN A 292 53.77 -96.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CKI A 300 DBREF 2CSN A 2 298 UNP P40233 CKI1_SCHPO 2 298 SEQADV 2CSN VAL A 82 UNP P40233 ILE 82 CONFLICT SEQRES 1 A 297 SER GLY GLN ASN ASN VAL VAL GLY VAL HIS TYR LYS VAL SEQRES 2 A 297 GLY ARG ARG ILE GLY GLU GLY SER PHE GLY VAL ILE PHE SEQRES 3 A 297 GLU GLY THR ASN LEU LEU ASN ASN GLN GLN VAL ALA ILE SEQRES 4 A 297 LYS PHE GLU PRO ARG ARG SER ASP ALA PRO GLN LEU ARG SEQRES 5 A 297 ASP GLU TYR ARG THR TYR LYS LEU LEU ALA GLY CYS THR SEQRES 6 A 297 GLY ILE PRO ASN VAL TYR TYR PHE GLY GLN GLU GLY LEU SEQRES 7 A 297 HIS ASN VAL LEU VAL ILE ASP LEU LEU GLY PRO SER LEU SEQRES 8 A 297 GLU ASP LEU LEU ASP LEU CYS GLY ARG LYS PHE SER VAL SEQRES 9 A 297 LYS THR VAL ALA MET ALA ALA LYS GLN MET LEU ALA ARG SEQRES 10 A 297 VAL GLN SER ILE HIS GLU LYS SER LEU VAL TYR ARG ASP SEQRES 11 A 297 ILE LYS PRO ASP ASN PHE LEU ILE GLY ARG PRO ASN SER SEQRES 12 A 297 LYS ASN ALA ASN MET ILE TYR VAL VAL ASP PHE GLY MET SEQRES 13 A 297 VAL LYS PHE TYR ARG ASP PRO VAL THR LYS GLN HIS ILE SEQRES 14 A 297 PRO TYR ARG GLU LYS LYS ASN LEU SER GLY THR ALA ARG SEQRES 15 A 297 TYR MET SER ILE ASN THR HIS LEU GLY ARG GLU GLN SER SEQRES 16 A 297 ARG ARG ASP ASP LEU GLU ALA LEU GLY HIS VAL PHE MET SEQRES 17 A 297 TYR PHE LEU ARG GLY SER LEU PRO TRP GLN GLY LEU LYS SEQRES 18 A 297 ALA ALA THR ASN LYS GLN LYS TYR GLU ARG ILE GLY GLU SEQRES 19 A 297 LYS LYS GLN SER THR PRO LEU ARG GLU LEU CYS ALA GLY SEQRES 20 A 297 PHE PRO GLU GLU PHE TYR LYS TYR MET HIS TYR ALA ARG SEQRES 21 A 297 ASN LEU ALA PHE ASP ALA THR PRO ASP TYR ASP TYR LEU SEQRES 22 A 297 GLN GLY LEU PHE SER LYS VAL LEU GLU ARG LEU ASN THR SEQRES 23 A 297 THR GLU ASP GLU ASN PHE ASP TRP ASN LEU LEU HET SO4 A 301 5 HET SO4 A 302 5 HET CKI A 300 18 HETNAM SO4 SULFATE ION HETNAM CKI N-(2-AMINOETHYL)-5-CHLOROISOQUINOLINE-8-SULFONAMIDE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CKI C11 H12 CL N3 O2 S FORMUL 5 HOH *157(H2 O) HELIX 1 1 LEU A 52 LEU A 62 1 11 HELIX 2 2 LEU A 92 LEU A 96 1 5 HELIX 3 3 VAL A 105 LYS A 125 1 21 HELIX 4 4 PRO A 134 ASN A 136 5 3 HELIX 5 5 ILE A 187 LEU A 191 1 5 HELIX 6 6 ARG A 197 ARG A 213 1 17 HELIX 7 7 ASN A 226 SER A 239 1 14 HELIX 8 8 LEU A 242 LEU A 245 1 4 HELIX 9 9 GLU A 251 ASN A 262 1 12 HELIX 10 10 TYR A 271 ARG A 284 1 14 HELIX 11 11 ASP A 294 ASN A 296 5 3 SHEET 1 A 5 TYR A 12 VAL A 14 0 SHEET 2 A 5 VAL A 25 ASN A 31 -1 N THR A 30 O LYS A 13 SHEET 3 A 5 GLN A 37 PRO A 44 -1 N PHE A 42 O VAL A 25 SHEET 4 A 5 HIS A 80 ASP A 86 -1 N ILE A 85 O ALA A 39 SHEET 5 A 5 VAL A 71 GLU A 77 -1 N GLU A 77 O HIS A 80 SHEET 1 B 2 PHE A 137 ILE A 139 0 SHEET 2 B 2 ILE A 150 VAL A 152 -1 N TYR A 151 O LEU A 138 SHEET 1 C 2 ARG A 17 GLY A 21 0 SHEET 2 C 2 GLY A 24 PHE A 27 -1 N ILE A 26 O ILE A 18 SITE 1 AC1 3 ARG A 130 LYS A 159 LYS A 176 SITE 1 AC2 3 ARG A 183 GLN A 219 GLY A 220 SITE 1 AC3 11 ILE A 18 ILE A 26 ALA A 39 TYR A 59 SITE 2 AC3 11 ASP A 86 LEU A 88 GLY A 89 ASP A 94 SITE 3 AC3 11 LEU A 138 VAL A 153 ASP A 154 CRYST1 79.100 79.100 120.040 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012642 0.007299 0.000000 0.00000 SCALE2 0.000000 0.014598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008331 0.00000