PDB Short entry for 2DAO HEADER DNA BINDING PROTEIN 14-DEC-05 2DAO TITLE SOLUTION STRUCTURE OF ETS DOMAIN TRANSCRIPTIONAL FACTOR ETV6 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR ETV6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ETS DOMAIN; COMPND 5 SYNONYM: ETS-RELATED PROTEIN TEL1, TEL, ETS TRANSLOCATION VARIANT 6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ETV6; SOURCE 6 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P050516-14; SOURCE 10 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ETS DOMAIN, TRANSCRIPTION FACTOR ETV6 PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,A.SASAGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DAO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DAO 1 VERSN REVDAT 1 12-DEC-06 2DAO 0 JRNL AUTH T.N.NIRAULA,A.SASAGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ETS DOMAIN TRANSCRIPTIONAL FACTOR ETV6 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DAO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025191. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM ETS DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 14 -25.54 -39.95 REMARK 500 1 GLN A 17 -35.78 -38.26 REMARK 500 1 SER A 65 -19.49 -49.62 REMARK 500 1 LEU A 68 -33.94 -34.29 REMARK 500 1 GLN A 83 -178.23 -50.50 REMARK 500 1 ARG A 100 -63.81 -128.39 REMARK 500 1 LEU A 107 36.25 -82.90 REMARK 500 1 GLN A 110 -63.80 -103.62 REMARK 500 1 GLU A 111 48.17 -76.21 REMARK 500 1 SER A 113 147.01 -174.58 REMARK 500 1 SER A 117 44.44 38.85 REMARK 500 2 LEU A 10 121.97 -37.61 REMARK 500 2 TRP A 12 -39.21 -37.72 REMARK 500 2 GLN A 17 -34.32 -36.31 REMARK 500 2 SER A 65 -30.54 -37.09 REMARK 500 2 ARG A 84 -67.17 -105.15 REMARK 500 2 LEU A 85 52.36 -105.21 REMARK 500 2 MET A 90 -72.91 -69.49 REMARK 500 2 MET A 97 -72.43 -34.71 REMARK 500 2 LEU A 104 37.65 -83.54 REMARK 500 3 SER A 5 -51.45 -133.51 REMARK 500 3 LEU A 10 170.80 -52.00 REMARK 500 3 LEU A 11 -70.88 -84.02 REMARK 500 3 TYR A 14 -25.58 -39.94 REMARK 500 3 ILE A 40 97.80 -63.87 REMARK 500 3 ASN A 55 29.48 47.07 REMARK 500 3 GLN A 83 130.82 -39.45 REMARK 500 3 LEU A 85 35.35 35.16 REMARK 500 3 MET A 90 -70.65 -34.62 REMARK 500 3 SER A 109 -33.48 -133.78 REMARK 500 3 GLU A 111 47.25 -76.87 REMARK 500 3 SER A 113 103.84 -56.29 REMARK 500 3 SER A 117 41.40 37.98 REMARK 500 4 SER A 2 42.83 -102.28 REMARK 500 4 SER A 3 42.45 -93.05 REMARK 500 4 CYS A 8 88.36 -63.40 REMARK 500 4 LEU A 10 -178.01 -63.42 REMARK 500 4 LEU A 11 -66.61 -94.84 REMARK 500 4 TRP A 12 -37.79 -36.51 REMARK 500 4 ASP A 21 97.63 -68.97 REMARK 500 4 LYS A 33 -27.55 -38.38 REMARK 500 4 LYS A 54 37.82 -86.91 REMARK 500 4 ASN A 55 39.45 34.61 REMARK 500 4 SER A 65 -37.51 -37.84 REMARK 500 4 LEU A 68 -35.06 -34.19 REMARK 500 4 ASN A 75 41.85 72.45 REMARK 500 4 ARG A 84 -70.74 -60.59 REMARK 500 4 MET A 90 -74.01 -60.48 REMARK 500 4 ARG A 100 35.78 72.95 REMARK 500 4 ASP A 102 50.96 39.52 REMARK 500 REMARK 500 THIS ENTRY HAS 243 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DAO A 8 112 UNP P41212 ETV6_HUMAN 338 442 SEQADV 2DAO GLY A 1 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 2 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 3 UNP P41212 CLONING ARTIFACT SEQADV 2DAO GLY A 4 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 5 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 6 UNP P41212 CLONING ARTIFACT SEQADV 2DAO GLY A 7 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 113 UNP P41212 CLONING ARTIFACT SEQADV 2DAO GLY A 114 UNP P41212 CLONING ARTIFACT SEQADV 2DAO PRO A 115 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 116 UNP P41212 CLONING ARTIFACT SEQADV 2DAO SER A 117 UNP P41212 CLONING ARTIFACT SEQADV 2DAO GLY A 118 UNP P41212 CLONING ARTIFACT SEQRES 1 A 118 GLY SER SER GLY SER SER GLY CYS ARG LEU LEU TRP ASP SEQRES 2 A 118 TYR VAL TYR GLN LEU LEU SER ASP SER ARG TYR GLU ASN SEQRES 3 A 118 PHE ILE ARG TRP GLU ASP LYS GLU SER LYS ILE PHE ARG SEQRES 4 A 118 ILE VAL ASP PRO ASN GLY LEU ALA ARG LEU TRP GLY ASN SEQRES 5 A 118 HIS LYS ASN ARG THR ASN MET THR TYR GLU LYS MET SER SEQRES 6 A 118 ARG ALA LEU ARG HIS TYR TYR LYS LEU ASN ILE ILE ARG SEQRES 7 A 118 LYS GLU PRO GLY GLN ARG LEU LEU PHE ARG PHE MET LYS SEQRES 8 A 118 THR PRO ASP GLU ILE MET SER GLY ARG THR ASP ARG LEU SEQRES 9 A 118 GLU HIS LEU GLU SER GLN GLU LEU SER GLY PRO SER SER SEQRES 10 A 118 GLY HELIX 1 1 LEU A 10 ASP A 21 1 12 HELIX 2 2 SER A 22 GLU A 25 5 4 HELIX 3 3 LYS A 33 SER A 35 5 3 HELIX 4 4 ASP A 42 LYS A 54 1 13 HELIX 5 5 THR A 60 LEU A 74 1 15 HELIX 6 6 PRO A 93 MET A 97 5 5 HELIX 7 7 ARG A 103 SER A 109 5 7 SHEET 1 A 4 ILE A 28 ASP A 32 0 SHEET 2 A 4 ILE A 37 ILE A 40 -1 N ILE A 37 O ASP A 32 SHEET 3 A 4 LEU A 86 PHE A 89 -1 O PHE A 87 N PHE A 38 SHEET 4 A 4 ILE A 77 ARG A 78 -1 N ARG A 78 O ARG A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000