PDB Short entry for 2DAZ HEADER PROTEIN BINDING 14-DEC-05 2DAZ TITLE SOLUTION STRUCTURE OF THE 7TH PDZ DOMAIN OF INAD-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT JUNCTION COMPND 6 PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-33; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT KEYWDS 3 JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,K.IZUMI,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DAZ 1 REMARK SEQADV SHEET REVDAT 2 24-FEB-09 2DAZ 1 VERSN REVDAT 1 14-JUN-06 2DAZ 0 JRNL AUTH K.INOUE,T.NAGASHIMA,K.IZUMI,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 7TH PDZ DOMAIN OF INAD-LIKE JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DAZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025200. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.28MM U-15N,13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 8 40.20 -89.16 REMARK 500 1 LYS A 35 -34.18 -34.24 REMARK 500 1 LEU A 38 86.14 -69.27 REMARK 500 1 SER A 52 129.92 -175.02 REMARK 500 1 ASN A 59 120.64 -37.71 REMARK 500 1 TYR A 85 109.09 -42.86 REMARK 500 1 MET A 117 165.93 -42.68 REMARK 500 2 SER A 2 149.72 -39.65 REMARK 500 2 ASP A 8 39.53 -91.95 REMARK 500 2 LYS A 35 -37.29 -34.39 REMARK 500 2 SER A 49 -39.75 -35.27 REMARK 500 2 ASN A 59 118.83 -34.92 REMARK 500 2 ARG A 69 -52.01 -121.76 REMARK 500 2 TYR A 85 98.85 -35.79 REMARK 500 2 SER A 119 38.76 74.64 REMARK 500 2 SER A 123 138.58 -172.54 REMARK 500 3 SER A 3 154.70 -37.30 REMARK 500 3 SER A 6 78.10 -69.26 REMARK 500 3 ASN A 45 149.63 -34.87 REMARK 500 3 ASN A 80 50.03 35.10 REMARK 500 3 TYR A 85 100.04 -36.12 REMARK 500 3 MET A 117 152.46 -46.64 REMARK 500 4 ASP A 8 30.69 -87.50 REMARK 500 4 LYS A 33 122.63 -35.05 REMARK 500 4 LYS A 35 -32.18 -36.49 REMARK 500 4 LEU A 38 85.08 -69.35 REMARK 500 4 SER A 49 -38.54 -37.30 REMARK 500 4 TYR A 85 94.14 -40.14 REMARK 500 4 PRO A 121 2.41 -69.76 REMARK 500 4 SER A 122 37.64 -99.83 REMARK 500 5 ASP A 8 36.56 -94.91 REMARK 500 5 ASN A 45 137.45 -34.45 REMARK 500 5 ASN A 81 44.88 74.81 REMARK 500 5 TYR A 85 94.84 -41.95 REMARK 500 5 PRO A 121 2.80 -69.76 REMARK 500 6 LYS A 35 -28.71 -37.53 REMARK 500 6 SER A 49 -37.95 -36.44 REMARK 500 6 TYR A 85 99.04 -40.81 REMARK 500 6 ALA A 118 -38.77 -39.73 REMARK 500 6 PRO A 121 91.79 -69.78 REMARK 500 7 LYS A 33 132.17 -39.16 REMARK 500 7 LYS A 35 -39.68 -34.25 REMARK 500 7 SER A 49 -33.83 -35.47 REMARK 500 7 ASN A 59 119.00 -39.19 REMARK 500 7 ASN A 80 47.08 37.28 REMARK 500 7 SER A 122 157.58 -48.96 REMARK 500 8 LYS A 35 -38.27 -36.94 REMARK 500 8 TYR A 85 92.94 -42.92 REMARK 500 8 PRO A 121 2.70 -69.78 REMARK 500 9 SER A 6 152.88 -46.21 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.2 RELATED DB: TARGETDB DBREF 2DAZ A 8 118 UNP Q8NI35 INADL_HUMAN 1219 1329 SEQADV 2DAZ GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 119 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ GLY A 120 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ PRO A 121 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 122 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ SER A 123 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DAZ GLY A 124 UNP Q8NI35 CLONING ARTIFACT SEQRES 1 A 124 GLY SER SER GLY SER SER GLY ASP ALA PHE THR ASP GLN SEQRES 2 A 124 LYS ILE ARG GLN ARG TYR ALA ASP LEU PRO GLY GLU LEU SEQRES 3 A 124 HIS ILE ILE GLU LEU GLU LYS ASP LYS ASN GLY LEU GLY SEQRES 4 A 124 LEU SER LEU ALA GLY ASN LYS ASP ARG SER ARG MET SER SEQRES 5 A 124 ILE PHE VAL VAL GLY ILE ASN PRO GLU GLY PRO ALA ALA SEQRES 6 A 124 ALA ASP GLY ARG MET ARG ILE GLY ASP GLU LEU LEU GLU SEQRES 7 A 124 ILE ASN ASN GLN ILE LEU TYR GLY ARG SER HIS GLN ASN SEQRES 8 A 124 ALA SER ALA ILE ILE LYS THR ALA PRO SER LYS VAL LYS SEQRES 9 A 124 LEU VAL PHE ILE ARG ASN GLU ASP ALA VAL ASN GLN MET SEQRES 10 A 124 ALA SER GLY PRO SER SER GLY HELIX 1 1 THR A 11 TYR A 19 1 9 HELIX 2 2 GLY A 62 GLY A 68 1 7 HELIX 3 3 SER A 88 ALA A 99 1 12 HELIX 4 4 ASP A 112 MET A 117 1 6 SHEET 1 A 3 GLU A 25 GLU A 32 0 SHEET 2 A 3 LYS A 102 ARG A 109 -1 O PHE A 107 N HIS A 27 SHEET 3 A 3 GLU A 75 ILE A 79 -1 N GLU A 78 O VAL A 106 SHEET 1 B 2 LEU A 40 ALA A 43 0 SHEET 2 B 2 ILE A 53 ILE A 58 -1 O GLY A 57 N SER A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000