PDB Short entry for 2DHI HEADER SIGNALING PROTEIN 24-MAR-06 2DHI TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM MOUSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY B MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: EVECTIN-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLEKHB2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-08; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PH DOMAIN, EVECTIN-2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,M.YONEYAMA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DHI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DHI 1 VERSN REVDAT 1 24-SEP-06 2DHI 0 JRNL AUTH H.LI,M.YONEYAMA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM MOUSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DHI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.24MM PH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 22 42.95 36.11 REMARK 500 1 ILE A 48 95.31 -55.67 REMARK 500 1 MET A 54 -69.90 -101.45 REMARK 500 1 PRO A 55 3.27 -69.79 REMARK 500 1 VAL A 56 -50.38 -122.19 REMARK 500 1 CYS A 67 176.30 -56.09 REMARK 500 1 ARG A 68 -175.99 -51.17 REMARK 500 1 ASP A 69 39.42 -80.64 REMARK 500 1 PRO A 73 -174.85 -69.84 REMARK 500 1 PRO A 77 -164.60 -69.72 REMARK 500 1 ARG A 87 -73.21 -61.77 REMARK 500 1 LYS A 90 132.59 -38.17 REMARK 500 1 THR A 114 42.81 -89.83 REMARK 500 1 SER A 118 140.41 -37.38 REMARK 500 1 SER A 119 -62.51 -109.25 REMARK 500 2 SER A 2 108.96 -40.73 REMARK 500 2 PHE A 8 131.48 -37.24 REMARK 500 2 ILE A 48 97.88 -62.37 REMARK 500 2 MET A 54 -70.39 -103.80 REMARK 500 2 PRO A 55 3.56 -69.78 REMARK 500 2 CYS A 67 165.92 -47.16 REMARK 500 2 PRO A 77 -164.37 -69.72 REMARK 500 3 MET A 54 -69.81 -100.95 REMARK 500 3 PRO A 55 3.86 -69.84 REMARK 500 3 CYS A 67 171.80 -55.42 REMARK 500 3 PRO A 77 -166.38 -69.68 REMARK 500 3 CYS A 86 -176.57 -65.01 REMARK 500 4 LYS A 22 50.43 34.48 REMARK 500 4 ILE A 48 102.98 -51.37 REMARK 500 4 MET A 54 -70.40 -103.49 REMARK 500 4 PRO A 55 2.90 -69.79 REMARK 500 4 CYS A 67 -176.11 -51.09 REMARK 500 4 ASP A 69 27.66 46.93 REMARK 500 4 ASP A 74 116.72 -39.85 REMARK 500 4 PRO A 77 -166.57 -69.80 REMARK 500 4 PRO A 117 88.39 -69.75 REMARK 500 5 PHE A 8 129.70 -38.73 REMARK 500 5 MET A 54 -70.25 -101.13 REMARK 500 5 PRO A 55 3.03 -69.76 REMARK 500 5 VAL A 56 -50.11 -121.99 REMARK 500 5 CYS A 67 161.57 -40.35 REMARK 500 5 ARG A 68 -173.62 -51.91 REMARK 500 5 ASP A 69 45.95 -74.96 REMARK 500 5 PRO A 73 -163.78 -69.69 REMARK 500 5 PRO A 77 -173.10 -69.76 REMARK 500 5 SER A 115 88.65 -69.48 REMARK 500 6 ASP A 30 118.27 -162.18 REMARK 500 6 MET A 54 -70.35 -103.03 REMARK 500 6 PRO A 55 3.44 -69.74 REMARK 500 6 VAL A 56 -53.16 -120.62 REMARK 500 REMARK 500 THIS ENTRY HAS 204 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007020904.1 RELATED DB: TARGETDB DBREF 2DHI A 8 114 UNP Q9QZC7 PKHB2_MOUSE 3 109 SEQADV 2DHI GLY A 1 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 2 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 3 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI GLY A 4 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 5 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 6 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI GLY A 7 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 115 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI GLY A 116 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI PRO A 117 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 118 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI SER A 119 UNP Q9QZC7 CLONING ARTIFACT SEQADV 2DHI GLY A 120 UNP Q9QZC7 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY PHE VAL LYS SER GLY TRP SEQRES 2 A 120 LEU LEU ARG GLN SER THR ILE LEU LYS ARG TRP LYS LYS SEQRES 3 A 120 ASN TRP PHE ASP LEU TRP SER ASP GLY HIS LEU ILE TYR SEQRES 4 A 120 TYR ASP ASP GLN THR ARG GLN SER ILE GLU ASP LYS VAL SEQRES 5 A 120 HIS MET PRO VAL ASP CYS ILE ASN ILE ARG THR GLY HIS SEQRES 6 A 120 GLU CYS ARG ASP ILE GLN PRO PRO ASP GLY LYS PRO ARG SEQRES 7 A 120 ASP CYS LEU LEU GLN ILE VAL CYS ARG ASP GLY LYS THR SEQRES 8 A 120 ILE SER LEU CYS ALA GLU SER THR ASP ASP CYS LEU ALA SEQRES 9 A 120 TRP LYS PHE THR LEU GLN ASP SER ARG THR SER GLY PRO SEQRES 10 A 120 SER SER GLY HELIX 1 1 THR A 99 ARG A 113 1 15 SHEET 1 A 7 ASP A 50 VAL A 52 0 SHEET 2 A 7 LEU A 37 TYR A 40 -1 N LEU A 37 O VAL A 52 SHEET 3 A 7 TRP A 24 LEU A 31 -1 N TRP A 28 O TYR A 40 SHEET 4 A 7 SER A 11 GLN A 17 -1 N LEU A 14 O ASN A 27 SHEET 5 A 7 THR A 91 CYS A 95 -1 O CYS A 95 N LEU A 15 SHEET 6 A 7 LEU A 81 CYS A 86 -1 N LEU A 82 O LEU A 94 SHEET 7 A 7 ILE A 59 THR A 63 -1 N ILE A 59 O VAL A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000