PDB Short entry for 2DK7 HEADER TRANSCRIPTION 06-APR-06 2DK7 TITLE SOLUTION STRUCTURE OF WW DOMAIN IN TRANSCRIPTION ELONGATION REGULATOR TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION REGULATOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW DOMAIN; COMPND 5 SYNONYM: TATA BOX-BINDING PROTEIN- ASSOCIATED FACTOR 2S, COMPND 6 TRANSCRIPTION FACTOR CA150; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TCERG1, CA150, TAF2S; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050822-13; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, WW DOMAIN, TRANSCRIPTION ELONGATION REGULATOR 1, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DK7 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DK7 1 VERSN REVDAT 1 24-APR-07 2DK7 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF WW DOMAIN IN TRANSCRIPTION ELONGATION JRNL TITL 2 REGULATOR 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DK7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025512. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90%H2O,10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 99.60 -54.76 REMARK 500 1 ALA A 9 141.73 -173.60 REMARK 500 1 ASP A 29 40.95 -91.67 REMARK 500 1 LYS A 66 -73.21 -73.58 REMARK 500 1 LYS A 67 177.80 -55.17 REMARK 500 2 SER A 5 43.08 35.35 REMARK 500 2 SER A 6 -58.93 -122.19 REMARK 500 2 ASP A 29 45.39 -92.96 REMARK 500 2 GLU A 30 42.98 39.54 REMARK 500 2 ASP A 49 -27.72 -37.77 REMARK 500 2 PRO A 70 2.79 -69.86 REMARK 500 2 SER A 72 176.37 -58.95 REMARK 500 3 SER A 5 50.12 -101.00 REMARK 500 3 LYS A 8 97.15 -56.72 REMARK 500 3 ASP A 29 41.44 -86.92 REMARK 500 3 ASP A 49 -26.34 -39.29 REMARK 500 3 LYS A 66 54.43 -105.58 REMARK 500 4 ASP A 29 35.45 -97.07 REMARK 500 4 LYS A 67 140.16 -171.32 REMARK 500 5 ASP A 29 41.86 -85.36 REMARK 500 5 ASP A 49 -26.33 -38.59 REMARK 500 5 LYS A 66 53.97 -118.54 REMARK 500 5 LYS A 67 145.71 -173.43 REMARK 500 6 SER A 2 -61.08 -124.10 REMARK 500 6 ASP A 29 43.31 -93.45 REMARK 500 7 ASP A 29 31.65 -94.18 REMARK 500 7 HIS A 65 -19.46 -48.29 REMARK 500 7 SER A 68 166.78 -46.91 REMARK 500 8 SER A 6 100.78 -37.04 REMARK 500 8 ASP A 29 46.88 -91.34 REMARK 500 8 GLU A 30 43.85 38.93 REMARK 500 8 PRO A 70 -175.74 -69.77 REMARK 500 9 SER A 2 151.73 -45.28 REMARK 500 9 ASP A 29 42.13 -88.06 REMARK 500 9 ASP A 49 -26.54 -38.46 REMARK 500 9 LYS A 66 50.40 -102.61 REMARK 500 10 ASP A 49 -26.77 -38.43 REMARK 500 10 PRO A 70 90.18 -69.76 REMARK 500 11 SER A 3 157.38 -40.45 REMARK 500 11 ASP A 29 49.84 -90.50 REMARK 500 11 GLU A 30 44.68 35.95 REMARK 500 11 ASP A 49 -25.37 -39.87 REMARK 500 11 ILE A 51 109.90 -43.94 REMARK 500 11 LYS A 67 126.45 -34.20 REMARK 500 11 SER A 71 40.06 -103.95 REMARK 500 12 LYS A 10 139.37 -39.96 REMARK 500 12 ASP A 29 46.51 -89.88 REMARK 500 12 GLU A 30 43.69 38.26 REMARK 500 12 ASP A 49 -26.08 -38.90 REMARK 500 12 LYS A 67 101.92 -56.77 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED DBREF 2DK7 A 8 67 UNP O14776 TCRG1_HUMAN 520 579 SEQADV 2DK7 GLY A 1 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 2 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 3 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 GLY A 4 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 5 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 6 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 GLY A 7 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 68 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 GLY A 69 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 PRO A 70 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 71 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 SER A 72 UNP O14776 CLONING ARTIFACT SEQADV 2DK7 GLY A 73 UNP O14776 CLONING ARTIFACT SEQRES 1 A 73 GLY SER SER GLY SER SER GLY LYS ALA LYS PRO VAL ALA SEQRES 2 A 73 THR ALA PRO ILE PRO GLY THR PRO TRP CYS VAL VAL TRP SEQRES 3 A 73 THR GLY ASP GLU ARG VAL PHE PHE TYR ASN PRO THR THR SEQRES 4 A 73 ARG LEU SER MET TRP ASP ARG PRO ASP ASP LEU ILE GLY SEQRES 5 A 73 ARG ALA ASP VAL ASP LYS ILE ILE GLN GLU PRO PRO HIS SEQRES 6 A 73 LYS LYS SER GLY PRO SER SER GLY HELIX 1 1 ASP A 55 GLN A 61 1 7 SHEET 1 A 4 ALA A 13 PRO A 16 0 SHEET 2 A 4 CYS A 23 THR A 27 -1 O TRP A 26 N ALA A 13 SHEET 3 A 4 VAL A 32 ASN A 36 -1 O PHE A 33 N VAL A 25 SHEET 4 A 4 LEU A 41 MET A 43 -1 O LEU A 41 N ASN A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000