PDB Short entry for 2DS4 HEADER PROTEIN BINDING 21-JUN-06 2DS4 TITLE SOLUTION STRUCTURE OF THE FILAMIN DOMAIN FROM HUMAN TRIPARTITE MOTIF TITLE 2 PROTEIN 45 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF PROTEIN 45; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FILAMIN DOMAIN; COMPND 5 SYNONYM: RING FINGER PROTEIN 99; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM45; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060227-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, IMMUNOGLOBULIN-LIKE FOLD, FILAMIN DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 21-DEC-22 2DS4 1 SEQADV REVDAT 3 09-MAR-22 2DS4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DS4 1 VERSN REVDAT 1 21-DEC-06 2DS4 0 JRNL AUTH T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FILAMIN DOMAIN FROM HUMAN JRNL TITL 2 TRIPARTITE MOTIF PROTEIN 45 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DS4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000025777. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM FILAMIN DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 47.24 36.07 REMARK 500 1 ASP A 20 53.03 39.67 REMARK 500 1 PRO A 64 -174.95 -69.76 REMARK 500 2 ASP A 20 65.95 -113.48 REMARK 500 2 SER A 63 96.45 -33.25 REMARK 500 2 PRO A 64 -171.87 -69.79 REMARK 500 2 VAL A 100 -178.64 -66.17 REMARK 500 2 LYS A 112 152.26 -46.03 REMARK 500 3 ASP A 20 69.47 -107.95 REMARK 500 3 ASN A 50 98.13 -58.19 REMARK 500 3 SER A 63 95.44 -31.93 REMARK 500 3 PRO A 64 -178.53 -69.73 REMARK 500 3 VAL A 100 176.61 -51.92 REMARK 500 3 PRO A 104 -179.29 -69.74 REMARK 500 4 ASP A 20 68.00 -110.42 REMARK 500 4 SER A 63 97.94 -35.29 REMARK 500 5 ASP A 20 69.54 -112.73 REMARK 500 5 GLU A 26 143.27 -39.74 REMARK 500 5 LYS A 27 49.50 34.08 REMARK 500 5 SER A 63 97.48 -34.60 REMARK 500 5 VAL A 100 -178.82 -66.22 REMARK 500 6 ASP A 20 71.78 -101.48 REMARK 500 6 ASP A 62 -63.83 -99.80 REMARK 500 6 SER A 63 97.42 -34.68 REMARK 500 6 LYS A 112 159.75 -40.29 REMARK 500 7 SER A 63 95.78 -32.49 REMARK 500 7 ARG A 110 -178.29 -61.80 REMARK 500 8 ASP A 20 43.21 -90.09 REMARK 500 8 ALA A 54 110.39 -171.32 REMARK 500 8 SER A 63 95.72 -32.29 REMARK 500 8 PRO A 64 -179.91 -69.78 REMARK 500 8 ARG A 66 99.79 -67.59 REMARK 500 9 ASP A 20 49.67 -92.16 REMARK 500 9 ASP A 62 -64.53 -107.52 REMARK 500 9 SER A 63 97.06 -34.22 REMARK 500 9 PRO A 64 -175.10 -69.73 REMARK 500 10 LYS A 27 49.67 37.05 REMARK 500 10 SER A 63 95.06 -31.48 REMARK 500 11 SER A 3 113.02 -162.72 REMARK 500 11 ASP A 20 73.06 -111.32 REMARK 500 11 LYS A 27 54.89 33.33 REMARK 500 11 SER A 63 95.55 -32.16 REMARK 500 11 PRO A 64 -172.57 -69.72 REMARK 500 12 CYS A 14 160.74 -46.14 REMARK 500 12 ASN A 50 98.03 -66.71 REMARK 500 12 PRO A 64 -178.81 -69.78 REMARK 500 12 VAL A 100 -179.75 -50.00 REMARK 500 13 CYS A 14 156.56 -47.14 REMARK 500 13 ASP A 62 -60.23 -94.67 REMARK 500 13 SER A 63 99.16 -37.12 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001814.1 RELATED DB: TARGETDB DBREF 2DS4 A 8 113 UNP Q9H8W5 TRI45_HUMAN 396 501 SEQADV 2DS4 GLY A 1 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 SER A 2 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 SER A 3 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 GLY A 4 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 SER A 5 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 SER A 6 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 GLY A 7 UNP Q9H8W5 CLONING ARTIFACT SEQADV 2DS4 THR A 108 UNP Q9H8W5 MET 496 VARIANT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY GLU VAL ASP PRO ALA LYS SEQRES 2 A 113 CYS VAL LEU GLN GLY GLU ASP LEU HIS ARG ALA ARG GLU SEQRES 3 A 113 LYS GLN THR ALA SER PHE THR LEU LEU CYS LYS ASP ALA SEQRES 4 A 113 ALA GLY GLU ILE MET GLY ARG GLY GLY ASP ASN VAL GLN SEQRES 5 A 113 VAL ALA VAL VAL PRO LYS ASP LYS LYS ASP SER PRO VAL SEQRES 6 A 113 ARG THR MET VAL GLN ASP ASN LYS ASP GLY THR TYR TYR SEQRES 7 A 113 ILE SER TYR THR PRO LYS GLU PRO GLY VAL TYR THR VAL SEQRES 8 A 113 TRP VAL CYS ILE LYS GLU GLN HIS VAL GLN GLY SER PRO SEQRES 9 A 113 PHE THR VAL THR VAL ARG ARG LYS HIS SHEET 1 A 4 VAL A 15 GLN A 17 0 SHEET 2 A 4 ALA A 30 LEU A 35 -1 O THR A 33 N GLN A 17 SHEET 3 A 4 THR A 76 THR A 82 -1 O TYR A 81 N ALA A 30 SHEET 4 A 4 ARG A 66 GLN A 70 -1 N GLN A 70 O TYR A 78 SHEET 1 B 4 ARG A 23 ARG A 25 0 SHEET 2 B 4 PHE A 105 ARG A 110 1 O ARG A 110 N ALA A 24 SHEET 3 B 4 GLY A 87 ILE A 95 -1 N GLY A 87 O VAL A 109 SHEET 4 B 4 VAL A 51 PRO A 57 -1 N ALA A 54 O TRP A 92 CISPEP 1 SER A 103 PRO A 104 1 -0.07 CISPEP 2 SER A 103 PRO A 104 2 -0.04 CISPEP 3 SER A 103 PRO A 104 3 -0.03 CISPEP 4 SER A 103 PRO A 104 4 0.02 CISPEP 5 SER A 103 PRO A 104 5 -0.05 CISPEP 6 SER A 103 PRO A 104 6 -0.06 CISPEP 7 SER A 103 PRO A 104 7 -0.03 CISPEP 8 SER A 103 PRO A 104 8 -0.03 CISPEP 9 SER A 103 PRO A 104 9 -0.05 CISPEP 10 SER A 103 PRO A 104 10 -0.03 CISPEP 11 SER A 103 PRO A 104 11 0.00 CISPEP 12 SER A 103 PRO A 104 12 -0.07 CISPEP 13 SER A 103 PRO A 104 13 -0.07 CISPEP 14 SER A 103 PRO A 104 14 0.00 CISPEP 15 SER A 103 PRO A 104 15 0.01 CISPEP 16 SER A 103 PRO A 104 16 0.01 CISPEP 17 SER A 103 PRO A 104 17 -0.08 CISPEP 18 SER A 103 PRO A 104 18 0.00 CISPEP 19 SER A 103 PRO A 104 19 -0.13 CISPEP 20 SER A 103 PRO A 104 20 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000