PDB Short entry for 2DYF HEADER PROTEIN BINDING 11-SEP-06 2DYF TITLE SOLUTION STRUCTURE OF THE FIRST WW DOMAIN OF FBP11 / HYPA (FBP11 WW1) TITLE 2 COMPLEXED WITH A PL (PPLP) MOTIF PEPTIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUNTINGTIN-INTERACTING PROTEIN HYPA/FBP11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE FIRST WW DOMAIN; COMPND 5 SYNONYM: PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A, FORMIN-BINDING COMPND 6 PROTEIN 3, HUNTINGTIN YEAST PARTNER A, FAS LIGAND-ASSOCIATED FACTOR COMPND 7 1, NY-REN-6 ANTIGEN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PL (PPLP) MOTIF PEPTIDE FROM MYOSIN TAIL REGION-INTERACTING COMPND 11 PROTEIN MTI1; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: PROTEIN BBC1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS WW DOMAIN, COMPLEX, FBP11, HYPA, PL MOTIF, PPLP MOTIF, SOLUTION KEYWDS 2 STRUCTURE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR Y.KATO,T.MIYAKAWA,J.KURITA,M.TANOKURA REVDAT 3 09-MAR-22 2DYF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DYF 1 VERSN REVDAT 1 24-OCT-06 2DYF 0 JRNL AUTH Y.KATO,T.MIYAKAWA,J.KURITA,M.TANOKURA JRNL TITL COMPLEX STRUCTURE OF FBP11 WW1 AND A PL LIGAND REVEALS THE JRNL TITL 2 MECHANISM OF PROLINE-RICH LIGAND RECOGNITION BY GROUP-II/III JRNL TITL 3 WW DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : HERRMANN, GUENTERT, WUETHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DYF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000025998. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5MM FBP11 WW1 U-15N, 13C 5.3MM REMARK 210 NATURAL ABUNDANCE PL MOTIF REMARK 210 PEPTIDE; 50MM PHOSPHATE BUFFER REMARK 210 NA; 50MM NACL; 90% H2O, 10% D2O; REMARK 210 1.5MM FBP11 WW1 U- 15N, 13C; REMARK 210 5.3MM NATURAL ABUNDANCE PL MOTIF REMARK 210 PEPTIDE; 50MM PHOSPHATE BUFFER REMARK 210 NA; 50MM NACL; 100% D2O; 1.6MM REMARK 210 FBP11 WW1 NATURAL ABUNDANCE; REMARK 210 4.4MM PL MOTIF PEPTIDE U-15N, REMARK 210 13C; 50MM PHOSPHATE BUFFER NA; REMARK 210 50MM NACL; 90% H2O, 10% D2O; REMARK 210 1.6MM FBP11 WW1 NATURAL REMARK 210 ABUNDANCE; 4.4MM PL MOTIF REMARK 210 PEPTIDE U-15N, 13C; 50MM REMARK 210 PHOSPHATE BUFFER NA; 50MM NACL; REMARK 210 100% D2O; 1.5MM FBP11 WW1 U-15N; REMARK 210 5.3MM NATURAL ABUNDANCE PL MOTIF REMARK 210 PEPTIDE; 50MM PHOSPHATE BUFFER REMARK 210 NA; 50MM NACL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; HNHA; REMARK 210 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, NMRPIPE, SPARKY 3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES AND 13C HALF FILTERED NOESY-HSQC. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 11 18.77 -150.36 REMARK 500 1 LYS A 30 67.63 61.17 REMARK 500 1 PRO A 37 88.68 -69.75 REMARK 500 2 SER A 11 17.61 -148.70 REMARK 500 2 LYS A 30 67.84 61.37 REMARK 500 2 PRO A 37 92.24 -69.76 REMARK 500 3 SER A 11 17.34 -148.33 REMARK 500 3 LYS A 30 67.84 61.52 REMARK 500 3 PRO A 37 73.01 -69.76 REMARK 500 3 PRO B 8 -171.35 -69.71 REMARK 500 4 SER A 11 18.17 -149.21 REMARK 500 4 LYS A 30 66.85 61.11 REMARK 500 4 PRO A 37 78.85 -69.75 REMARK 500 5 SER A 11 19.10 -151.00 REMARK 500 5 LYS A 30 67.19 61.31 REMARK 500 5 PRO A 37 80.30 -69.77 REMARK 500 5 PRO B 8 82.15 -69.72 REMARK 500 6 SER A 11 17.82 -148.96 REMARK 500 6 LYS A 30 67.75 61.39 REMARK 500 6 ASP A 38 -61.98 -142.91 REMARK 500 6 ALA B 4 160.47 63.72 REMARK 500 6 PRO B 8 -174.85 -69.80 REMARK 500 7 SER A 11 19.09 -150.76 REMARK 500 7 LYS A 30 66.84 61.52 REMARK 500 7 PRO A 37 81.73 -69.75 REMARK 500 7 SER B 2 121.71 66.55 REMARK 500 8 SER A 11 17.93 -149.16 REMARK 500 8 LYS A 30 67.62 61.38 REMARK 500 8 PRO A 37 82.20 -69.73 REMARK 500 8 THR B 3 64.48 -103.87 REMARK 500 9 SER A 11 17.94 -149.16 REMARK 500 9 LYS A 30 67.01 61.18 REMARK 500 9 PRO A 37 81.63 -69.79 REMARK 500 10 SER A 11 18.25 -149.53 REMARK 500 10 LYS A 30 68.07 61.30 REMARK 500 10 PRO A 37 93.73 -69.72 REMARK 500 10 ASP A 38 -56.59 -163.00 REMARK 500 10 ALA B 4 160.44 62.87 REMARK 500 11 SER A 11 18.86 -150.19 REMARK 500 11 LYS A 30 66.52 61.47 REMARK 500 11 PRO A 37 88.43 -69.78 REMARK 500 11 ASP A 38 -48.43 -135.06 REMARK 500 11 ALA B 4 160.31 63.76 REMARK 500 11 PRO B 8 -178.28 -69.73 REMARK 500 12 SER A 11 18.45 -150.11 REMARK 500 12 LYS A 30 66.49 61.63 REMARK 500 12 PRO A 37 81.52 -69.77 REMARK 500 12 ASP A 38 18.50 -142.24 REMARK 500 12 ALA B 4 160.59 63.88 REMARK 500 12 PRO B 8 -174.61 -69.74 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZR7 RELATED DB: PDB REMARK 900 LIGAND-FREE FORM OF FBP11 WW1 DBREF 2DYF A 12 39 UNP O75400 PRP40_HUMAN 146 173 DBREF 2DYF B 3 9 UNP P47068 BBC1_YEAST 796 802 SEQADV 2DYF GLY A 10 UNP O75400 CLONING ARTIFACT SEQADV 2DYF SER A 11 UNP O75400 CLONING ARTIFACT SEQADV 2DYF GLY B 1 UNP P47068 CLONING ARTIFACT SEQADV 2DYF SER B 2 UNP P47068 CLONING ARTIFACT SEQRES 1 A 30 GLY SER TRP THR GLU HIS LYS SER PRO ASP GLY ARG THR SEQRES 2 A 30 TYR TYR TYR ASN THR GLU THR LYS GLN SER THR TRP GLU SEQRES 3 A 30 LYS PRO ASP ASP SEQRES 1 B 9 GLY SER THR ALA PRO PRO LEU PRO ARG SHEET 1 A 3 TRP A 12 LYS A 16 0 SHEET 2 A 3 THR A 22 ASN A 26 -1 O TYR A 23 N HIS A 15 SHEET 3 A 3 GLN A 31 THR A 33 -1 O THR A 33 N TYR A 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000