PDB Short entry for 2DZR HEADER TRANSCRIPTION 30-SEP-06 2DZR TITLE SOLUTION STRUCTURE OF RSGI RUH-067, A GTF2I DOMAIN IN HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: GTF2I DOMAIN, GTF2I-LIKE 4; COMPND 6 SYNONYM: GTF2I REPEAT DOMAIN-CONTAINING PROTEIN 1, MUSCLE TFII-I COMPND 7 REPEAT DOMAIN-CONTAINING PROTEIN 1, GENERAL TRANSCRIPTION FACTOR III, COMPND 8 SLOW- MUSCLE-FIBER ENHANCER-BINDING PROTEIN, USE B1-BINDING PROTEIN, COMPND 9 MUSTRD1/BEN, WILLIAMS-BEUREN SYNDROME CHROMOSOME REGION 11 PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NP005676; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050627-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS (E. COLI) KEYWDS RSGI RUH-067, TRANSCRIPTION FACTOR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.DOI-KATAYAMA,H.HIROTA,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DZR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DZR 1 VERSN REVDAT 1 30-MAR-07 2DZR 0 JRNL AUTH Y.DOI-KATAYAMA,H.HIROTA,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-067, A GTF2I DOMAIN IN HUMAN JRNL TITL 2 CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026045. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26MM GTF2I DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9747, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 9 H GLN A 13 1.52 REMARK 500 O ASP A 14 H LYS A 18 1.56 REMARK 500 O GLU A 47 H LYS A 77 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 83.47 -152.39 REMARK 500 1 LEU A 8 -72.04 -42.16 REMARK 500 1 LEU A 15 -71.81 -45.56 REMARK 500 1 ILE A 26 165.11 -46.24 REMARK 500 1 SER A 43 -70.94 -105.24 REMARK 500 1 LEU A 49 164.26 -49.70 REMARK 500 1 GLU A 67 -32.45 -37.13 REMARK 500 1 ARG A 82 158.11 -42.00 REMARK 500 1 LEU A 87 122.40 -178.93 REMARK 500 1 ASP A 92 152.13 60.91 REMARK 500 1 SER A 94 -175.57 77.93 REMARK 500 2 SER A 2 124.22 63.64 REMARK 500 2 LEU A 8 -70.35 -42.56 REMARK 500 2 LEU A 15 -71.50 -51.39 REMARK 500 2 ILE A 26 165.10 -44.49 REMARK 500 2 LEU A 49 164.70 -48.70 REMARK 500 2 GLU A 67 -33.49 -38.00 REMARK 500 2 ARG A 82 157.14 -38.90 REMARK 500 2 GLN A 85 147.52 64.41 REMARK 500 2 SER A 94 139.88 179.59 REMARK 500 2 SER A 98 -58.57 -175.66 REMARK 500 3 SER A 6 113.45 -167.95 REMARK 500 3 LEU A 8 -70.90 -42.84 REMARK 500 3 LEU A 15 -71.75 -51.95 REMARK 500 3 LYS A 19 -39.74 -39.93 REMARK 500 3 ILE A 26 165.15 -45.93 REMARK 500 3 SER A 43 -74.24 -102.28 REMARK 500 3 LEU A 49 164.55 -49.30 REMARK 500 3 GLU A 67 -31.76 -37.83 REMARK 500 3 GLN A 85 -59.85 -136.42 REMARK 500 3 ILE A 88 142.81 62.32 REMARK 500 3 ASP A 92 164.78 175.59 REMARK 500 4 SER A 2 122.19 63.19 REMARK 500 4 LEU A 8 -70.64 -44.17 REMARK 500 4 LEU A 15 -71.38 -48.74 REMARK 500 4 ILE A 26 165.62 -44.07 REMARK 500 4 SER A 43 -74.97 -109.93 REMARK 500 4 LEU A 49 164.39 -49.84 REMARK 500 4 GLU A 67 -32.08 -38.06 REMARK 500 4 ILE A 76 120.43 -39.54 REMARK 500 4 ARG A 82 164.42 -42.37 REMARK 500 4 LYS A 90 76.21 -169.11 REMARK 500 4 SER A 97 -62.69 72.98 REMARK 500 4 SER A 98 -58.98 -171.41 REMARK 500 5 SER A 5 114.88 60.82 REMARK 500 5 SER A 6 123.62 173.17 REMARK 500 5 LEU A 8 -70.33 -42.72 REMARK 500 5 LEU A 15 -71.60 -46.27 REMARK 500 5 ILE A 26 165.09 -48.71 REMARK 500 5 SER A 43 -74.31 -110.99 REMARK 500 REMARK 500 THIS ENTRY HAS 226 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DZQ RELATED DB: PDB REMARK 900 OTHER DOMAIN(RSGI RUH-066) FROM THE SAME PROTEIN REMARK 900 RELATED ID: 2DN5 RELATED DB: PDB REMARK 900 OTHER DOMAIN(RSGI RUH-057) FROM THE SAME PROTEIN REMARK 900 RELATED ID: 2D99 RELATED DB: PDB REMARK 900 OTHER DOMAIN(RSGI RUH-048) FROM THE SAME PROTEIN REMARK 900 RELATED ID: HSO002000922.3 RELATED DB: TARGETDB DBREF 2DZR A 8 93 UNP Q9UHL9 GT2D1_HUMAN 705 790 SEQADV 2DZR GLY A 1 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 2 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 3 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR GLY A 4 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 5 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 6 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR GLY A 7 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 94 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR GLY A 95 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR PRO A 96 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 97 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR SER A 98 UNP Q9UHL9 CLONING ARTIFACT SEQADV 2DZR GLY A 99 UNP Q9UHL9 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY LEU ARG GLU GLN VAL GLN SEQRES 2 A 99 ASP LEU PHE ASN LYS LYS TYR GLY GLU ALA LEU GLY ILE SEQRES 3 A 99 LYS TYR PRO VAL GLN VAL PRO TYR LYS ARG ILE LYS SER SEQRES 4 A 99 ASN PRO GLY SER VAL ILE ILE GLU GLY LEU PRO PRO GLY SEQRES 5 A 99 ILE PRO PHE ARG LYS PRO CYS THR PHE GLY SER GLN ASN SEQRES 6 A 99 LEU GLU ARG ILE LEU ALA VAL ALA ASP LYS ILE LYS PHE SEQRES 7 A 99 THR VAL THR ARG PRO PHE GLN GLY LEU ILE PRO LYS PRO SEQRES 8 A 99 ASP GLU SER GLY PRO SER SER GLY HELIX 1 1 LEU A 8 LEU A 24 1 17 HELIX 2 2 LYS A 35 SER A 39 1 5 HELIX 3 4 SER A 63 VAL A 72 1 10 SHEET 1 A 2 VAL A 44 GLU A 47 0 SHEET 2 A 2 LYS A 77 VAL A 80 -1 O LYS A 77 N GLU A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000