PDB Short entry for 2E0G HEADER REPLICATION 07-OCT-06 2E0G TITLE DNAA N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: DNAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DOMAIN STRUCTURE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, REPLICATION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR Y.ABE,T.KATAYAMA,T.UEDA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 14-JUN-23 2E0G 1 REMARK REVDAT 3 26-FEB-20 2E0G 1 REMARK REVDAT 2 24-FEB-09 2E0G 1 VERSN REVDAT 1 01-MAY-07 2E0G 0 JRNL AUTH Y.ABE,T.JO,Y.MATSUDA,C.MATSUNAGA,T.KATAYAMA,T.UEDA JRNL TITL STRUCTURE AND FUNCTION OF DNAA N-TERMINAL DOMAINS: SPECIFIC JRNL TITL 2 SITES AND MECHANISMS IN INTER-DNAA INTERACTION AND IN DNAB JRNL TITL 3 HELICASE LOADING ON ORIC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E0G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026070. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM DNAA N-TERMINAL DOMAIN U REMARK 210 -15N, 13C, 50MM PHOSPATE BUFFER REMARK 210 (PH6.5), 20MM EDTA, 40MM KCL, REMARK 210 2MM DTT, 10% SUCROSE; 90% H2O, REMARK 210 10% D2O; 0.8MM DNAA N-TERMINAL REMARK 210 DOMAIN U-13C, 50MM PHOSPATE REMARK 210 BUFFER (PH6.5), 20MM EDTA, 40MM REMARK 210 KCL, 2MM DTT, 10% SUCROSE; 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 100.44 -48.21 REMARK 500 1 ILE A 25 -39.07 -148.03 REMARK 500 1 ASP A 34 -6.90 75.35 REMARK 500 1 ASN A 35 17.62 -175.55 REMARK 500 1 LYS A 53 -62.20 -101.53 REMARK 500 1 CYS A 66 -48.85 -137.35 REMARK 500 1 ALA A 70 105.73 -44.29 REMARK 500 1 PRO A 71 -165.18 -69.77 REMARK 500 1 GLN A 84 99.91 -179.23 REMARK 500 1 PRO A 86 -170.94 -69.78 REMARK 500 1 GLN A 87 139.02 -172.54 REMARK 500 1 ASN A 93 144.16 -179.25 REMARK 500 1 ALA A 96 69.05 -178.13 REMARK 500 1 PRO A 97 -174.39 -69.78 REMARK 500 1 GLN A 104 73.42 52.14 REMARK 500 2 ALA A 18 102.75 -45.53 REMARK 500 2 ILE A 25 -40.16 -147.39 REMARK 500 2 ASP A 34 -5.34 77.42 REMARK 500 2 ASN A 35 20.27 -176.76 REMARK 500 2 LYS A 53 -63.38 -100.88 REMARK 500 2 CYS A 66 -49.47 -135.15 REMARK 500 2 ALA A 68 -3.14 73.64 REMARK 500 2 PRO A 86 -171.81 -69.76 REMARK 500 2 GLN A 87 102.61 -179.32 REMARK 500 2 ALA A 88 -169.81 -177.81 REMARK 500 2 ALA A 89 110.43 64.69 REMARK 500 2 VAL A 90 23.82 -155.04 REMARK 500 2 SER A 92 -169.98 -179.32 REMARK 500 2 ASN A 93 105.28 63.27 REMARK 500 2 ALA A 96 73.91 -178.27 REMARK 500 2 ALA A 98 138.15 -178.25 REMARK 500 2 GLN A 99 -170.74 -171.46 REMARK 500 2 VAL A 100 149.15 64.73 REMARK 500 2 GLN A 102 149.43 -172.16 REMARK 500 2 PRO A 105 -173.36 -69.73 REMARK 500 3 SER A 3 174.06 -59.01 REMARK 500 3 ILE A 25 -40.03 -146.68 REMARK 500 3 ASP A 34 -5.14 75.00 REMARK 500 3 ASN A 35 20.01 -176.91 REMARK 500 3 LYS A 53 -62.24 -101.52 REMARK 500 3 CYS A 66 -49.05 -135.32 REMARK 500 3 ALA A 68 -3.59 74.08 REMARK 500 3 PRO A 71 -177.73 -69.81 REMARK 500 3 GLN A 84 130.65 -176.04 REMARK 500 3 THR A 85 70.86 -174.69 REMARK 500 3 GLN A 87 138.15 -178.08 REMARK 500 3 ALA A 88 141.35 -177.84 REMARK 500 3 ALA A 89 112.90 -176.58 REMARK 500 3 THR A 91 132.92 -175.49 REMARK 500 3 SER A 92 134.45 -178.74 REMARK 500 REMARK 500 THIS ENTRY HAS 452 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 10027 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENT DBREF 2E0G A 1 107 UNP P03004 DNAA_ECOLI 2 108 SEQRES 1 A 107 SER LEU SER LEU TRP GLN GLN CYS LEU ALA ARG LEU GLN SEQRES 2 A 107 ASP GLU LEU PRO ALA THR GLU PHE SER MET TRP ILE ARG SEQRES 3 A 107 PRO LEU GLN ALA GLU LEU SER ASP ASN THR LEU ALA LEU SEQRES 4 A 107 TYR ALA PRO ASN ARG PHE VAL LEU ASP TRP VAL ARG ASP SEQRES 5 A 107 LYS TYR LEU ASN ASN ILE ASN GLY LEU LEU THR SER PHE SEQRES 6 A 107 CYS GLY ALA ASP ALA PRO GLN LEU ARG PHE GLU VAL GLY SEQRES 7 A 107 THR LYS PRO VAL THR GLN THR PRO GLN ALA ALA VAL THR SEQRES 8 A 107 SER ASN VAL ALA ALA PRO ALA GLN VAL ALA GLN THR GLN SEQRES 9 A 107 PRO GLN ARG HELIX 1 1 SER A 3 LEU A 16 1 14 HELIX 2 2 THR A 19 TRP A 24 1 6 HELIX 3 3 ASN A 43 LYS A 53 1 11 HELIX 4 4 LYS A 53 CYS A 66 1 14 SHEET 1 A 3 GLN A 29 LEU A 32 0 SHEET 2 A 3 THR A 36 ALA A 41 -1 O ALA A 38 N GLU A 31 SHEET 3 A 3 GLN A 72 LEU A 73 1 O GLN A 72 N LEU A 37 SHEET 1 B 3 GLN A 29 LEU A 32 0 SHEET 2 B 3 THR A 36 ALA A 41 -1 O ALA A 38 N GLU A 31 SHEET 3 B 3 GLU A 76 VAL A 77 1 O GLU A 76 N ALA A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000