PDB Short entry for 2E3U HEADER RNA BINDING PROTEIN 29-NOV-06 2E3U TITLE CRYSTAL STRUCTURE ANALYSIS OF DIM2P FROM PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH1566; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PH-DIM2P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PRE-RIBOSOMAL RNA PROCESSING FACTOR, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.TANOKURA,M.Z.JIA REVDAT 3 13-JUL-11 2E3U 1 VERSN REVDAT 2 24-FEB-09 2E3U 1 VERSN REVDAT 1 23-OCT-07 2E3U 0 JRNL AUTH M.Z.JIA,J.OHTSUKA,W.C.LEE,K.NAGATA,M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF DIM2P: A PRERIBOSOMAL RNA PROCESSING JRNL TITL 2 FACTOR, FROM PYROCOCCUS HORIKOSHII OT3 AT 2.30 A JRNL REF PROTEINS V. 69 428 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17654551 JRNL DOI 10.1002/PROT.21381 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 9135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -3.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1336 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1793 ; 1.466 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;34.636 ;22.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;17.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 956 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 609 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 915 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 49 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 858 ; 0.839 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1332 ; 1.374 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 550 ; 2.223 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 461 ; 3.574 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9735 8.3291 -4.0481 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.0747 REMARK 3 T33: 0.0747 T12: 0.0630 REMARK 3 T13: 0.0511 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 21.1602 L22: 14.2383 REMARK 3 L33: 5.1546 L12: 16.2043 REMARK 3 L13: 1.1860 L23: 0.6711 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: -0.4035 S13: 0.4743 REMARK 3 S21: -0.0498 S22: -0.4328 S23: 0.1573 REMARK 3 S31: -0.9645 S32: -0.3910 S33: 0.3124 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6899 -6.5575 -8.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1980 REMARK 3 T33: 0.0766 T12: -0.0814 REMARK 3 T13: 0.1206 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 3.5893 L22: 5.4381 REMARK 3 L33: 6.6549 L12: 2.2351 REMARK 3 L13: 3.3741 L23: -1.6530 REMARK 3 S TENSOR REMARK 3 S11: -0.2904 S12: -0.0151 S13: -0.1326 REMARK 3 S21: 0.4399 S22: -0.1863 S23: 0.6286 REMARK 3 S31: 0.5455 S32: -0.9354 S33: 0.4767 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9516 -10.1559 -2.5647 REMARK 3 T TENSOR REMARK 3 T11: 0.4036 T22: 0.0669 REMARK 3 T33: -0.0334 T12: 0.0759 REMARK 3 T13: -0.0330 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 16.0863 L22: 18.3932 REMARK 3 L33: 6.9505 L12: 12.6489 REMARK 3 L13: -0.2778 L23: 1.9283 REMARK 3 S TENSOR REMARK 3 S11: 0.4469 S12: -0.5370 S13: -0.7648 REMARK 3 S21: 0.9086 S22: -0.3225 S23: -0.8246 REMARK 3 S31: 1.2800 S32: 0.2832 S33: -0.1244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7644 -1.8852 -2.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1142 REMARK 3 T33: 0.0281 T12: 0.0381 REMARK 3 T13: 0.0406 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 8.8206 L22: 2.4750 REMARK 3 L33: 3.9853 L12: -1.4306 REMARK 3 L13: -1.4250 L23: -0.9960 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.5985 S13: -0.0073 REMARK 3 S21: 0.3430 S22: -0.2883 S23: 0.0276 REMARK 3 S31: 0.4606 S32: 0.5096 S33: 0.3423 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8046 -1.4462 -2.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.3277 REMARK 3 T33: -0.0375 T12: -0.0821 REMARK 3 T13: 0.0631 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 27.0378 L22: 10.9709 REMARK 3 L33: 4.1946 L12: -8.0604 REMARK 3 L13: -4.7673 L23: 6.7819 REMARK 3 S TENSOR REMARK 3 S11: 0.3535 S12: -1.0905 S13: -0.3706 REMARK 3 S21: 0.6786 S22: -0.1851 S23: 0.3634 REMARK 3 S31: -0.1578 S32: -0.0255 S33: -0.1684 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4585 5.4278 -2.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.1172 REMARK 3 T33: 0.0550 T12: 0.0218 REMARK 3 T13: -0.0239 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 8.7721 L22: 1.7720 REMARK 3 L33: 3.5369 L12: 1.4367 REMARK 3 L13: -3.1154 L23: -1.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.3931 S13: -0.4000 REMARK 3 S21: 0.3264 S22: -0.2769 S23: -0.2074 REMARK 3 S31: -0.0576 S32: 0.2336 S33: 0.1668 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6381 2.7651 -11.3924 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1195 REMARK 3 T33: 0.0903 T12: 0.0376 REMARK 3 T13: 0.0107 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.2710 L22: 4.8153 REMARK 3 L33: 1.6601 L12: 3.8546 REMARK 3 L13: 1.6858 L23: 2.2470 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: 0.1575 S13: 0.1712 REMARK 3 S21: 0.0371 S22: 0.0506 S23: 0.0144 REMARK 3 S31: 0.0042 S32: -0.0962 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0176 -6.3882 -16.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.0326 REMARK 3 T33: 0.0718 T12: 0.0097 REMARK 3 T13: -0.0098 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 7.3986 L22: 2.3661 REMARK 3 L33: 5.9289 L12: 2.2390 REMARK 3 L13: -0.3766 L23: 1.2959 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.0182 S13: -0.1593 REMARK 3 S21: 0.3235 S22: -0.0651 S23: -0.0919 REMARK 3 S31: 0.5201 S32: 0.0079 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1925 2.3173 -21.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.0807 REMARK 3 T33: 0.0646 T12: 0.0057 REMARK 3 T13: -0.0161 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 9.4645 L22: 0.7083 REMARK 3 L33: 4.1464 L12: 0.1898 REMARK 3 L13: 2.5120 L23: 1.6161 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.2766 S13: 0.0915 REMARK 3 S21: 0.0497 S22: -0.1633 S23: -0.0093 REMARK 3 S31: -0.5128 S32: -0.0058 S33: 0.1039 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0877 -1.9371 -30.3512 REMARK 3 T TENSOR REMARK 3 T11: -0.0993 T22: 0.5704 REMARK 3 T33: 0.3940 T12: 0.1077 REMARK 3 T13: -0.2162 T23: -0.1119 REMARK 3 L TENSOR REMARK 3 L11: 0.0887 L22: 0.0412 REMARK 3 L33: 12.8682 L12: -0.0601 REMARK 3 L13: 0.1885 L23: -0.2002 REMARK 3 S TENSOR REMARK 3 S11: 0.5200 S12: -0.3478 S13: 0.7974 REMARK 3 S21: -1.5928 S22: -1.2476 S23: 0.6290 REMARK 3 S31: -0.7731 S32: -2.4025 S33: 0.7276 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3262 -11.3069 -31.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.1646 REMARK 3 T33: 0.0750 T12: -0.1039 REMARK 3 T13: -0.0010 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 18.8525 L22: 12.7680 REMARK 3 L33: 3.4923 L12: -12.4305 REMARK 3 L13: -3.5166 L23: 5.7382 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: 0.0107 S13: -0.5054 REMARK 3 S21: -0.0707 S22: -0.2441 S23: 0.9878 REMARK 3 S31: 0.5332 S32: -0.5082 S33: 0.1561 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4281 -11.2522 -32.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.0856 REMARK 3 T33: 0.0497 T12: 0.0294 REMARK 3 T13: -0.0280 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 10.2711 L22: 10.9254 REMARK 3 L33: 2.6447 L12: 10.3474 REMARK 3 L13: 3.4557 L23: 4.3432 REMARK 3 S TENSOR REMARK 3 S11: 0.1707 S12: -0.1645 S13: -0.1005 REMARK 3 S21: 0.3028 S22: -0.1385 S23: -0.2408 REMARK 3 S31: 0.0766 S32: -0.0355 S33: -0.0323 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4558 -2.5914 -25.4277 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1026 REMARK 3 T33: 0.0678 T12: -0.0016 REMARK 3 T13: -0.0118 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.9244 L22: 0.9722 REMARK 3 L33: 6.6850 L12: -0.4114 REMARK 3 L13: -0.7894 L23: -0.6359 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.0431 S13: 0.0403 REMARK 3 S21: -0.2568 S22: -0.1255 S23: 0.0302 REMARK 3 S31: -0.1555 S32: -0.3401 S33: 0.1731 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4337 1.4857 -33.0392 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.1262 REMARK 3 T33: 0.0541 T12: 0.0312 REMARK 3 T13: -0.0157 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 8.6064 L22: 3.6996 REMARK 3 L33: 8.4298 L12: 0.9895 REMARK 3 L13: 8.4016 L23: 1.8703 REMARK 3 S TENSOR REMARK 3 S11: -0.5404 S12: 0.0575 S13: 0.6813 REMARK 3 S21: -0.1995 S22: 0.1155 S23: 0.0900 REMARK 3 S31: -0.8989 S32: -0.2215 S33: 0.4249 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7266 -3.7655 -39.9491 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1576 REMARK 3 T33: 0.0110 T12: 0.0908 REMARK 3 T13: -0.1128 T23: 0.0864 REMARK 3 L TENSOR REMARK 3 L11: 12.8041 L22: 2.4596 REMARK 3 L33: 24.6700 L12: 5.6067 REMARK 3 L13: 12.5815 L23: 5.7467 REMARK 3 S TENSOR REMARK 3 S11: -0.3523 S12: -0.1059 S13: 0.4211 REMARK 3 S21: -0.4102 S22: -0.5423 S23: -0.0218 REMARK 3 S31: -0.6188 S32: -1.8605 S33: 0.8946 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3406 -3.4152 -41.3616 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.2150 REMARK 3 T33: -0.0271 T12: 0.0007 REMARK 3 T13: -0.0007 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 13.9500 L22: 9.5326 REMARK 3 L33: 9.2173 L12: -1.6802 REMARK 3 L13: 10.2028 L23: 1.4661 REMARK 3 S TENSOR REMARK 3 S11: 0.2544 S12: 0.8012 S13: -0.0068 REMARK 3 S21: -0.6537 S22: -0.0957 S23: 0.1398 REMARK 3 S31: -0.1419 S32: 1.0241 S33: -0.1586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB026190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1TUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 3000, 0.1M CACODYLATE BUFFER, REMARK 280 0.2M MAGNESIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.97450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.97450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 MET A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 PHE A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 VAL A 15 REMARK 465 ASN A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 18 REMARK 465 GLY A 19 REMARK 465 GLU A 20 REMARK 465 ILE A 21 REMARK 465 VAL A 22 REMARK 465 GLU A 23 REMARK 465 ASP A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 26 REMARK 465 GLU A 27 REMARK 465 TRP A 28 REMARK 465 GLU A 29 REMARK 465 GLU A 30 REMARK 465 PHE A 31 REMARK 465 PHE A 32 REMARK 465 ILE A 129 REMARK 465 GLY A 130 REMARK 465 ASN A 131 REMARK 465 GLU A 132 REMARK 465 LYS A 133 REMARK 465 ASN A 134 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 ASP A 207 REMARK 465 LEU A 208 REMARK 465 GLU A 209 REMARK 465 LEU A 210 REMARK 465 GLU A 211 REMARK 465 GLY A 212 REMARK 465 ALA A 213 REMARK 465 MET A 214 REMARK 465 TYR A 215 REMARK 465 TYR A 216 REMARK 465 GLU A 217 REMARK 465 ASN A 218 REMARK 465 LEU A 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -36.68 -39.21 REMARK 500 LYS A 51 108.66 -55.18 REMARK 500 LYS A 52 54.66 37.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 2E3U A 1 219 UNP O59282 O59282_PYRHO 1 219 SEQRES 1 A 219 MET GLY GLU GLU PHE GLU LYS LEU MET LYS LYS PHE GLU SEQRES 2 A 219 ASN VAL ASN LYS ASP GLY GLU ILE VAL GLU ASP GLU ASP SEQRES 3 A 219 GLU TRP GLU GLU PHE PHE LYS GLN GLU GLU TYR VAL LYS SEQRES 4 A 219 ILE PRO LYS ASP ARG ILE ALA VAL LEU ILE GLY LYS LYS SEQRES 5 A 219 GLY GLN THR LYS LYS GLU ILE GLU LYS ARG THR LYS THR SEQRES 6 A 219 LYS ILE THR ILE ASP SER GLU THR GLY GLU VAL TRP ILE SEQRES 7 A 219 THR SER THR LYS GLU THR GLU ASP PRO LEU ALA VAL TRP SEQRES 8 A 219 LYS ALA ARG ASP ILE VAL LEU ALA ILE GLY ARG GLY PHE SEQRES 9 A 219 SER PRO GLU ARG ALA PHE ARG LEU LEU ASN GLU GLY GLU SEQRES 10 A 219 TYR LEU GLU ILE ILE ASN LEU THR ASP ILE ILE ILE GLY SEQRES 11 A 219 ASN GLU LYS ASN ALA LEU PRO ARG VAL ARG GLY ARG ILE SEQRES 12 A 219 ILE GLY ARG LYS GLY ARG THR ARG GLN ILE ILE GLU GLU SEQRES 13 A 219 MET SER GLY ALA SER VAL SER VAL TYR GLY LYS THR VAL SEQRES 14 A 219 ALA ILE ILE GLY ASN PRO ILE GLN ILE GLU ILE ALA LYS SEQRES 15 A 219 THR ALA ILE GLU LYS LEU ALA ARG GLY SER PRO HIS GLY SEQRES 16 A 219 SER VAL TYR ARG TYR LEU GLU ARG ARG LYS LYS ASP LEU SEQRES 17 A 219 GLU LEU GLU GLY ALA MET TYR TYR GLU ASN LEU FORMUL 2 HOH *20(H2 O) HELIX 1 1 PRO A 41 GLY A 50 1 10 HELIX 2 2 GLY A 53 LYS A 64 1 12 HELIX 3 3 ASP A 86 ARG A 102 1 17 HELIX 4 4 SER A 105 PHE A 110 1 6 HELIX 5 5 ARG A 111 ASN A 114 5 4 HELIX 6 6 THR A 125 ILE A 127 5 3 HELIX 7 7 ALA A 135 GLY A 145 1 11 HELIX 8 8 GLY A 148 GLY A 159 1 12 HELIX 9 9 ASN A 174 ARG A 190 1 17 HELIX 10 10 PRO A 193 ARG A 204 1 12 SHEET 1 A 3 GLU A 35 LYS A 39 0 SHEET 2 A 3 GLU A 75 SER A 80 -1 O VAL A 76 N VAL A 38 SHEET 3 A 3 THR A 65 ILE A 69 -1 N LYS A 66 O THR A 79 SHEET 1 B 3 TYR A 118 ASN A 123 0 SHEET 2 B 3 THR A 168 GLY A 173 -1 O VAL A 169 N ILE A 122 SHEET 3 B 3 SER A 161 TYR A 165 -1 N SER A 163 O ALA A 170 CRYST1 45.949 47.450 95.722 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010447 0.00000