PDB Short entry for 2E5W HEADER TRANSFERASE 25-DEC-06 2E5W TITLE CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM PYROCOCCUS HORIKOSHII TITLE 2 OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PUTRESCINE AMINOPROPYLTRANSFERASE, SPDSY; COMPND 5 EC: 2.5.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS SPERMIDINE SYNTHASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2E5W 1 REMARK REVDAT 3 13-JUL-11 2E5W 1 VERSN REVDAT 2 24-FEB-09 2E5W 1 VERSN REVDAT 1 26-JUN-07 2E5W 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3506335.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 108624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5449 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 16377 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 834 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 827 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.93000 REMARK 3 B22 (A**2) : -6.70000 REMARK 3 B33 (A**2) : -9.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.110 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 54.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : MTA.PARAM REMARK 3 PARAMETER FILE 4 : AG3.PARAM REMARK 3 PARAMETER FILE 5 : ACT.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : MTA.TOP REMARK 3 TOPOLOGY FILE 4 : AG3.TOP REMARK 3 TOPOLOGY FILE 5 : ACT.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(V/V) PEG 200, 0.1M ACETATE BUFFER, REMARK 280 0.1M NACL, PH 4.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.70550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.36750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.70550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.36750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. REMARK 300 IN THE ASYMMETRIC UNIT THERE ARE TWO DIMER: CHAIN A + B, AND C + D. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1176 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASP B 3 REMARK 465 THR B 163 REMARK 465 ASP B 164 REMARK 465 PRO B 165 REMARK 465 VAL B 166 REMARK 465 GLY B 167 REMARK 465 PRO B 168 REMARK 465 ALA B 169 REMARK 465 GLU B 170 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 ASP D 3 REMARK 465 THR D 163 REMARK 465 ASP D 164 REMARK 465 PRO D 165 REMARK 465 VAL D 166 REMARK 465 GLY D 167 REMARK 465 PRO D 168 REMARK 465 ALA D 169 REMARK 465 GLU D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -1.99 80.24 REMARK 500 ARG A 22 165.15 176.59 REMARK 500 ASN A 76 81.11 -162.90 REMARK 500 VAL A 166 -57.32 -124.43 REMARK 500 GLU B 57 79.46 -103.28 REMARK 500 ASN B 76 80.01 -162.83 REMARK 500 SER B 242 38.22 -85.84 REMARK 500 ASN C 76 81.04 -165.44 REMARK 500 ASP C 161 67.17 -116.13 REMARK 500 SER C 162 -167.47 -102.61 REMARK 500 ASN D 76 82.08 -161.94 REMARK 500 ILE D 120 -63.49 -98.08 REMARK 500 TYR D 260 -67.45 -121.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG3 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG3 C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA C 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000211.1 RELATED DB: TARGETDB DBREF 2E5W A 1 280 UNP O57950 SPEE_PYRHO 1 280 DBREF 2E5W B 1 280 UNP O57950 SPEE_PYRHO 1 280 DBREF 2E5W C 1 280 UNP O57950 SPEE_PYRHO 1 280 DBREF 2E5W D 1 280 UNP O57950 SPEE_PYRHO 1 280 SEQRES 1 A 280 MET ARG ASP MET GLU PHE ILE GLU TRP TYR PRO ARG GLY SEQRES 2 A 280 TYR GLY VAL ALA PHE LYS VAL LYS ARG LYS ILE LEU GLU SEQRES 3 A 280 GLU GLN SER GLU TYR GLN LYS ILE GLU VAL TYR GLU THR SEQRES 4 A 280 GLU GLY PHE GLY LYS LEU LEU ALA ILE ASP GLY THR VAL SEQRES 5 A 280 GLN LEU VAL THR GLU GLY GLU LYS SER TYR HIS GLU PRO SEQRES 6 A 280 LEU VAL HIS PRO ALA MET LEU ALA HIS PRO ASN PRO ARG SEQRES 7 A 280 ARG VAL LEU ILE ILE GLY GLY GLY ASP GLY GLY ALA ILE SEQRES 8 A 280 ARG GLU VAL LEU LYS HIS GLU GLU VAL GLU GLU VAL ILE SEQRES 9 A 280 MET VAL GLU ILE ASP LYS LYS VAL ILE GLU ILE SER ALA SEQRES 10 A 280 LYS TYR ILE GLY ILE ASP GLY GLY ILE LEU GLU LYS MET SEQRES 11 A 280 LEU SER ASP LYS HIS GLU LYS GLY LYS LEU ILE ILE GLY SEQRES 12 A 280 ASP GLY VAL LYS PHE ILE GLU GLU ASN SER GLY PHE ASP SEQRES 13 A 280 VAL ILE ILE VAL ASP SER THR ASP PRO VAL GLY PRO ALA SEQRES 14 A 280 GLU MET LEU PHE SER GLU GLU PHE TYR LYS ASN ALA TYR SEQRES 15 A 280 ARG ALA LEU ASN ASP PRO GLY ILE TYR VAL THR GLN ALA SEQRES 16 A 280 GLY SER VAL TYR LEU PHE THR ASP GLU PHE LEU THR ALA SEQRES 17 A 280 TYR ARG LYS MET ARG LYS VAL PHE ASP LYS VAL TYR TYR SEQRES 18 A 280 TYR SER PHE PRO VAL ILE GLY TYR ALA SER PRO TRP ALA SEQRES 19 A 280 PHE LEU VAL GLY VAL LYS GLY SER ILE ASP PHE MET LYS SEQRES 20 A 280 VAL ASP ALA GLU LYS GLY LYS LYS LEU GLY LEU GLU TYR SEQRES 21 A 280 TYR ASP PRO ASP LYS HIS GLU THR LEU PHE GLN MET PRO SEQRES 22 A 280 ARG TYR ILE VAL GLN MET LEU SEQRES 1 B 280 MET ARG ASP MET GLU PHE ILE GLU TRP TYR PRO ARG GLY SEQRES 2 B 280 TYR GLY VAL ALA PHE LYS VAL LYS ARG LYS ILE LEU GLU SEQRES 3 B 280 GLU GLN SER GLU TYR GLN LYS ILE GLU VAL TYR GLU THR SEQRES 4 B 280 GLU GLY PHE GLY LYS LEU LEU ALA ILE ASP GLY THR VAL SEQRES 5 B 280 GLN LEU VAL THR GLU GLY GLU LYS SER TYR HIS GLU PRO SEQRES 6 B 280 LEU VAL HIS PRO ALA MET LEU ALA HIS PRO ASN PRO ARG SEQRES 7 B 280 ARG VAL LEU ILE ILE GLY GLY GLY ASP GLY GLY ALA ILE SEQRES 8 B 280 ARG GLU VAL LEU LYS HIS GLU GLU VAL GLU GLU VAL ILE SEQRES 9 B 280 MET VAL GLU ILE ASP LYS LYS VAL ILE GLU ILE SER ALA SEQRES 10 B 280 LYS TYR ILE GLY ILE ASP GLY GLY ILE LEU GLU LYS MET SEQRES 11 B 280 LEU SER ASP LYS HIS GLU LYS GLY LYS LEU ILE ILE GLY SEQRES 12 B 280 ASP GLY VAL LYS PHE ILE GLU GLU ASN SER GLY PHE ASP SEQRES 13 B 280 VAL ILE ILE VAL ASP SER THR ASP PRO VAL GLY PRO ALA SEQRES 14 B 280 GLU MET LEU PHE SER GLU GLU PHE TYR LYS ASN ALA TYR SEQRES 15 B 280 ARG ALA LEU ASN ASP PRO GLY ILE TYR VAL THR GLN ALA SEQRES 16 B 280 GLY SER VAL TYR LEU PHE THR ASP GLU PHE LEU THR ALA SEQRES 17 B 280 TYR ARG LYS MET ARG LYS VAL PHE ASP LYS VAL TYR TYR SEQRES 18 B 280 TYR SER PHE PRO VAL ILE GLY TYR ALA SER PRO TRP ALA SEQRES 19 B 280 PHE LEU VAL GLY VAL LYS GLY SER ILE ASP PHE MET LYS SEQRES 20 B 280 VAL ASP ALA GLU LYS GLY LYS LYS LEU GLY LEU GLU TYR SEQRES 21 B 280 TYR ASP PRO ASP LYS HIS GLU THR LEU PHE GLN MET PRO SEQRES 22 B 280 ARG TYR ILE VAL GLN MET LEU SEQRES 1 C 280 MET ARG ASP MET GLU PHE ILE GLU TRP TYR PRO ARG GLY SEQRES 2 C 280 TYR GLY VAL ALA PHE LYS VAL LYS ARG LYS ILE LEU GLU SEQRES 3 C 280 GLU GLN SER GLU TYR GLN LYS ILE GLU VAL TYR GLU THR SEQRES 4 C 280 GLU GLY PHE GLY LYS LEU LEU ALA ILE ASP GLY THR VAL SEQRES 5 C 280 GLN LEU VAL THR GLU GLY GLU LYS SER TYR HIS GLU PRO SEQRES 6 C 280 LEU VAL HIS PRO ALA MET LEU ALA HIS PRO ASN PRO ARG SEQRES 7 C 280 ARG VAL LEU ILE ILE GLY GLY GLY ASP GLY GLY ALA ILE SEQRES 8 C 280 ARG GLU VAL LEU LYS HIS GLU GLU VAL GLU GLU VAL ILE SEQRES 9 C 280 MET VAL GLU ILE ASP LYS LYS VAL ILE GLU ILE SER ALA SEQRES 10 C 280 LYS TYR ILE GLY ILE ASP GLY GLY ILE LEU GLU LYS MET SEQRES 11 C 280 LEU SER ASP LYS HIS GLU LYS GLY LYS LEU ILE ILE GLY SEQRES 12 C 280 ASP GLY VAL LYS PHE ILE GLU GLU ASN SER GLY PHE ASP SEQRES 13 C 280 VAL ILE ILE VAL ASP SER THR ASP PRO VAL GLY PRO ALA SEQRES 14 C 280 GLU MET LEU PHE SER GLU GLU PHE TYR LYS ASN ALA TYR SEQRES 15 C 280 ARG ALA LEU ASN ASP PRO GLY ILE TYR VAL THR GLN ALA SEQRES 16 C 280 GLY SER VAL TYR LEU PHE THR ASP GLU PHE LEU THR ALA SEQRES 17 C 280 TYR ARG LYS MET ARG LYS VAL PHE ASP LYS VAL TYR TYR SEQRES 18 C 280 TYR SER PHE PRO VAL ILE GLY TYR ALA SER PRO TRP ALA SEQRES 19 C 280 PHE LEU VAL GLY VAL LYS GLY SER ILE ASP PHE MET LYS SEQRES 20 C 280 VAL ASP ALA GLU LYS GLY LYS LYS LEU GLY LEU GLU TYR SEQRES 21 C 280 TYR ASP PRO ASP LYS HIS GLU THR LEU PHE GLN MET PRO SEQRES 22 C 280 ARG TYR ILE VAL GLN MET LEU SEQRES 1 D 280 MET ARG ASP MET GLU PHE ILE GLU TRP TYR PRO ARG GLY SEQRES 2 D 280 TYR GLY VAL ALA PHE LYS VAL LYS ARG LYS ILE LEU GLU SEQRES 3 D 280 GLU GLN SER GLU TYR GLN LYS ILE GLU VAL TYR GLU THR SEQRES 4 D 280 GLU GLY PHE GLY LYS LEU LEU ALA ILE ASP GLY THR VAL SEQRES 5 D 280 GLN LEU VAL THR GLU GLY GLU LYS SER TYR HIS GLU PRO SEQRES 6 D 280 LEU VAL HIS PRO ALA MET LEU ALA HIS PRO ASN PRO ARG SEQRES 7 D 280 ARG VAL LEU ILE ILE GLY GLY GLY ASP GLY GLY ALA ILE SEQRES 8 D 280 ARG GLU VAL LEU LYS HIS GLU GLU VAL GLU GLU VAL ILE SEQRES 9 D 280 MET VAL GLU ILE ASP LYS LYS VAL ILE GLU ILE SER ALA SEQRES 10 D 280 LYS TYR ILE GLY ILE ASP GLY GLY ILE LEU GLU LYS MET SEQRES 11 D 280 LEU SER ASP LYS HIS GLU LYS GLY LYS LEU ILE ILE GLY SEQRES 12 D 280 ASP GLY VAL LYS PHE ILE GLU GLU ASN SER GLY PHE ASP SEQRES 13 D 280 VAL ILE ILE VAL ASP SER THR ASP PRO VAL GLY PRO ALA SEQRES 14 D 280 GLU MET LEU PHE SER GLU GLU PHE TYR LYS ASN ALA TYR SEQRES 15 D 280 ARG ALA LEU ASN ASP PRO GLY ILE TYR VAL THR GLN ALA SEQRES 16 D 280 GLY SER VAL TYR LEU PHE THR ASP GLU PHE LEU THR ALA SEQRES 17 D 280 TYR ARG LYS MET ARG LYS VAL PHE ASP LYS VAL TYR TYR SEQRES 18 D 280 TYR SER PHE PRO VAL ILE GLY TYR ALA SER PRO TRP ALA SEQRES 19 D 280 PHE LEU VAL GLY VAL LYS GLY SER ILE ASP PHE MET LYS SEQRES 20 D 280 VAL ASP ALA GLU LYS GLY LYS LYS LEU GLY LEU GLU TYR SEQRES 21 D 280 TYR ASP PRO ASP LYS HIS GLU THR LEU PHE GLN MET PRO SEQRES 22 D 280 ARG TYR ILE VAL GLN MET LEU HET ACT A1102 4 HET AG3 A1001 13 HET MTA A1003 20 HET ACT B1101 4 HET ACT C1104 4 HET AG3 C1002 13 HET MTA C1004 20 HET ACT D1103 4 HETNAM ACT ACETATE ION HETNAM AG3 1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETSYN AG3 N1-AMINOPROPYLAGMATINE FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 6 AG3 2(C8 H21 N5) FORMUL 7 MTA 2(C11 H15 N5 O3 S) FORMUL 13 HOH *827(H2 O) HELIX 1 1 GLU A 59 HIS A 74 1 16 HELIX 2 2 GLY A 88 LEU A 95 1 8 HELIX 3 3 ASP A 109 ILE A 120 1 12 HELIX 4 4 GLY A 125 SER A 132 1 8 HELIX 5 5 ASP A 144 GLU A 150 1 7 HELIX 6 6 ALA A 169 PHE A 173 5 5 HELIX 7 7 SER A 174 ALA A 184 1 11 HELIX 8 8 PHE A 201 LYS A 214 1 14 HELIX 9 9 ASP A 249 LYS A 255 1 7 HELIX 10 10 ASP A 262 GLN A 271 5 10 HELIX 11 11 PRO A 273 GLN A 278 1 6 HELIX 12 12 GLU B 59 HIS B 74 1 16 HELIX 13 13 GLY B 88 LEU B 95 1 8 HELIX 14 14 ASP B 109 ILE B 120 1 12 HELIX 15 15 GLY B 125 SER B 132 1 8 HELIX 16 16 ASP B 144 ASN B 152 1 9 HELIX 17 17 SER B 174 ALA B 184 1 11 HELIX 18 18 PHE B 201 LYS B 214 1 14 HELIX 19 19 ASP B 249 LYS B 255 1 7 HELIX 20 20 ASP B 262 GLN B 271 5 10 HELIX 21 21 PRO B 273 GLN B 278 1 6 HELIX 22 22 GLU C 59 HIS C 74 1 16 HELIX 23 23 GLY C 88 LEU C 95 1 8 HELIX 24 24 ASP C 109 ILE C 120 1 12 HELIX 25 25 GLY C 125 SER C 132 1 8 HELIX 26 26 ASP C 144 ASN C 152 1 9 HELIX 27 27 ALA C 169 PHE C 173 5 5 HELIX 28 28 SER C 174 ALA C 184 1 11 HELIX 29 29 PHE C 201 LYS C 214 1 14 HELIX 30 30 ASP C 249 LYS C 255 1 7 HELIX 31 31 ASP C 262 GLN C 271 5 10 HELIX 32 32 PRO C 273 GLN C 278 1 6 HELIX 33 33 GLU D 59 HIS D 74 1 16 HELIX 34 34 GLY D 88 LEU D 95 1 8 HELIX 35 35 ASP D 109 ILE D 120 1 12 HELIX 36 36 GLY D 125 SER D 132 1 8 HELIX 37 37 ASP D 144 ASN D 152 1 9 HELIX 38 38 SER D 174 ALA D 184 1 11 HELIX 39 39 PHE D 201 LYS D 214 1 14 HELIX 40 40 ASP D 249 LYS D 255 1 7 HELIX 41 41 ASP D 262 GLN D 271 5 10 HELIX 42 42 PRO D 273 LEU D 280 1 8 SHEET 1 A 4 MET A 4 TYR A 10 0 SHEET 2 A 4 TYR A 14 GLN A 28 -1 O TYR A 14 N TYR A 10 SHEET 3 A 4 TYR B 14 GLN B 28 -1 O ALA B 17 N GLY A 15 SHEET 4 A 4 GLU B 5 TYR B 10 -1 N TYR B 10 O TYR B 14 SHEET 1 B 8 THR A 51 VAL A 55 0 SHEET 2 B 8 LYS A 44 ILE A 48 -1 N LEU A 46 O GLN A 53 SHEET 3 B 8 LYS A 33 THR A 39 -1 N GLU A 35 O ALA A 47 SHEET 4 B 8 TYR A 14 GLN A 28 -1 N LYS A 21 O GLU A 38 SHEET 5 B 8 TYR B 14 GLN B 28 -1 O ALA B 17 N GLY A 15 SHEET 6 B 8 LYS B 33 THR B 39 -1 O ILE B 34 N GLU B 27 SHEET 7 B 8 LYS B 44 ILE B 48 -1 O ALA B 47 N GLU B 35 SHEET 8 B 8 THR B 51 VAL B 55 -1 O GLN B 53 N LEU B 46 SHEET 1 C 7 GLY A 138 ILE A 142 0 SHEET 2 C 7 GLU A 102 GLU A 107 1 N MET A 105 O ILE A 141 SHEET 3 C 7 ARG A 79 GLY A 84 1 N ILE A 82 O ILE A 104 SHEET 4 C 7 PHE A 155 ASP A 161 1 O ILE A 159 N LEU A 81 SHEET 5 C 7 LEU A 185 SER A 197 1 O VAL A 192 N VAL A 160 SHEET 6 C 7 TRP A 233 LYS A 240 -1 O ALA A 234 N ALA A 195 SHEET 7 C 7 LYS A 218 PHE A 224 -1 N TYR A 220 O VAL A 237 SHEET 1 D 7 GLY B 138 ILE B 142 0 SHEET 2 D 7 GLU B 102 GLU B 107 1 N MET B 105 O LYS B 139 SHEET 3 D 7 ARG B 79 GLY B 84 1 N GLY B 84 O VAL B 106 SHEET 4 D 7 PHE B 155 ASP B 161 1 O ASP B 161 N ILE B 83 SHEET 5 D 7 LEU B 185 SER B 197 1 O VAL B 192 N ILE B 158 SHEET 6 D 7 TRP B 233 LYS B 240 -1 O ALA B 234 N ALA B 195 SHEET 7 D 7 LYS B 218 PHE B 224 -1 N TYR B 220 O VAL B 237 SHEET 1 E 4 MET C 4 TYR C 10 0 SHEET 2 E 4 TYR C 14 GLN C 28 -1 O TYR C 14 N TYR C 10 SHEET 3 E 4 TYR D 14 GLN D 28 -1 O GLY D 15 N ALA C 17 SHEET 4 E 4 GLU D 5 TYR D 10 -1 N TYR D 10 O TYR D 14 SHEET 1 F 8 THR C 51 VAL C 55 0 SHEET 2 F 8 LYS C 44 ILE C 48 -1 N LEU C 46 O GLN C 53 SHEET 3 F 8 LYS C 33 THR C 39 -1 N GLU C 35 O ALA C 47 SHEET 4 F 8 TYR C 14 GLN C 28 -1 N GLU C 27 O ILE C 34 SHEET 5 F 8 TYR D 14 GLN D 28 -1 O GLY D 15 N ALA C 17 SHEET 6 F 8 LYS D 33 THR D 39 -1 O ILE D 34 N GLU D 27 SHEET 7 F 8 LYS D 44 ILE D 48 -1 O ALA D 47 N GLU D 35 SHEET 8 F 8 THR D 51 VAL D 55 -1 O GLN D 53 N LEU D 46 SHEET 1 G 7 GLY C 138 ILE C 142 0 SHEET 2 G 7 GLU C 102 GLU C 107 1 N MET C 105 O LYS C 139 SHEET 3 G 7 ARG C 79 GLY C 84 1 N ILE C 82 O ILE C 104 SHEET 4 G 7 PHE C 155 ASP C 161 1 O ILE C 159 N LEU C 81 SHEET 5 G 7 LEU C 185 SER C 197 1 O VAL C 192 N VAL C 160 SHEET 6 G 7 TRP C 233 LYS C 240 -1 O ALA C 234 N ALA C 195 SHEET 7 G 7 LYS C 218 PHE C 224 -1 N PHE C 224 O TRP C 233 SHEET 1 H 7 GLY D 138 ILE D 142 0 SHEET 2 H 7 GLU D 102 GLU D 107 1 N MET D 105 O ILE D 141 SHEET 3 H 7 ARG D 79 GLY D 84 1 N ILE D 82 O ILE D 104 SHEET 4 H 7 PHE D 155 ASP D 161 1 O ASP D 161 N ILE D 83 SHEET 5 H 7 LEU D 185 SER D 197 1 O VAL D 192 N ILE D 158 SHEET 6 H 7 TRP D 233 LYS D 240 -1 O ALA D 234 N ALA D 195 SHEET 7 H 7 LYS D 218 PHE D 224 -1 N TYR D 220 O VAL D 237 CISPEP 1 ASP A 187 PRO A 188 0 0.17 CISPEP 2 SER A 231 PRO A 232 0 0.01 CISPEP 3 ASP B 187 PRO B 188 0 0.16 CISPEP 4 SER B 231 PRO B 232 0 0.13 CISPEP 5 ASP C 187 PRO C 188 0 0.28 CISPEP 6 SER C 231 PRO C 232 0 0.03 CISPEP 7 ASP D 187 PRO D 188 0 0.36 CISPEP 8 SER D 231 PRO D 232 0 0.07 SITE 1 AC1 4 HOH A1130 SER B 231 HOH B1115 HOH B1123 SITE 1 AC2 2 SER A 231 HOH A1103 SITE 1 AC3 4 HOH C1119 HOH C1130 SER D 231 HOH D1107 SITE 1 AC4 3 SER C 231 HOH C1107 HOH C1192 SITE 1 AC5 14 GLU A 8 TYR A 10 VAL A 52 GLN A 53 SITE 2 AC5 14 TYR A 62 HIS A 63 ASP A 87 ASP A 161 SITE 3 AC5 14 SER A 162 ASP A 164 GLN A 194 TYR A 229 SITE 4 AC5 14 TRP A 233 MTA A1003 SITE 1 AC6 14 GLU C 8 TYR C 10 VAL C 52 GLN C 53 SITE 2 AC6 14 TYR C 62 HIS C 63 ASP C 87 ASP C 161 SITE 3 AC6 14 SER C 162 ASP C 164 GLN C 194 TYR C 229 SITE 4 AC6 14 TRP C 233 MTA C1004 SITE 1 AC7 22 GLN A 32 ILE A 48 GLN A 53 GLY A 84 SITE 2 AC7 22 GLY A 85 GLY A 86 ASP A 87 VAL A 106 SITE 3 AC7 22 GLU A 107 ILE A 108 ASP A 109 VAL A 112 SITE 4 AC7 22 GLY A 143 ASP A 144 GLY A 145 ASP A 161 SITE 5 AC7 22 SER A 162 THR A 163 PRO A 168 ALA A 169 SITE 6 AC7 22 LEU A 172 AG3 A1001 SITE 1 AC8 20 GLN C 32 ILE C 48 GLN C 53 GLY C 84 SITE 2 AC8 20 GLY C 85 GLY C 86 ASP C 87 VAL C 106 SITE 3 AC8 20 GLU C 107 ILE C 108 ASP C 109 VAL C 112 SITE 4 AC8 20 ASP C 144 GLY C 145 ASP C 161 SER C 162 SITE 5 AC8 20 THR C 163 PRO C 168 ALA C 169 AG3 C1002 CRYST1 149.411 122.735 102.085 90.00 117.69 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006693 0.000000 0.003512 0.00000 SCALE2 0.000000 0.008148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011063 0.00000