PDB Short entry for 2E7Y HEADER HYDROLASE 15-JAN-07 2E7Y TITLE HIGH RESOLUTION STRUCTURE OF T. MARITIMA TRNASE Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNASE Z; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.26.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS RNASE, TRNA MATURATION, METALLO-BETA-LACTAMSE, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ISHII,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 3 25-OCT-23 2E7Y 1 REMARK LINK REVDAT 2 24-FEB-09 2E7Y 1 VERSN REVDAT 1 11-SEP-07 2E7Y 0 JRNL AUTH R.ISHII,A.MINAGAWA,H.TAKAKU,M.TAKAGI,M.NASHIMOTO,S.YOKOYAMA JRNL TITL THE STRUCTURE OF THE FLEXIBLE ARM OF THERMOTOGA MARITIMA JRNL TITL 2 TRNASE Z DIFFERS FROM THOSE OF HOMOLOGOUS ENZYMES JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 637 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17671357 JRNL DOI 10.1107/S1744309107033623 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2738348.360 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 58367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8439 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.76000 REMARK 3 B22 (A**2) : -3.04000 REMARK 3 B33 (A**2) : 4.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 10.290; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 11.260; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 14.480; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 16.060; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 75.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PGO.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PGO.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58373 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 10% PEG 4000, 0.5M REMARK 280 LI2SO4, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.44300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.44300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.14950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.34700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.14950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.34700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.44300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 75.14950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.34700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.44300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 75.14950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.34700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1411 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 213 REMARK 465 ALA A 214 REMARK 465 ARG A 215 REMARK 465 ASP A 216 REMARK 465 ARG A 217 REMARK 465 ARG A 218 REMARK 465 TYR A 219 REMARK 465 LYS A 220 REMARK 465 GLY B 67 REMARK 465 MET B 68 REMARK 465 GLY B 69 REMARK 465 ASP B 70 REMARK 465 ARG B 71 REMARK 465 LYS B 133 REMARK 465 HIS B 134 REMARK 465 VAL B 135 REMARK 465 SER B 136 REMARK 465 SER B 137 REMARK 465 GLU B 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 116 O HOH B 2375 1.99 REMARK 500 OH TYR B 89 O HOH B 2306 2.06 REMARK 500 OH TYR A 89 O HOH A 1363 2.09 REMARK 500 O HOH B 2344 O HOH B 2390 2.14 REMARK 500 O HOH A 1384 O HOH A 1410 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1484 O HOH A 1484 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 142 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 GLY B 142 N - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -18.23 75.94 REMARK 500 ASP A 25 160.97 69.09 REMARK 500 ALA A 26 56.68 -148.74 REMARK 500 HIS A 48 -169.25 -165.08 REMARK 500 LYS A 124 -1.28 -153.80 REMARK 500 HIS A 134 -84.04 -132.20 REMARK 500 SER A 136 3.86 55.92 REMARK 500 SER A 137 -73.67 -98.47 REMARK 500 CYS A 209 64.37 -152.09 REMARK 500 HIS A 222 -154.60 -128.99 REMARK 500 PRO A 274 -7.64 -59.92 REMARK 500 LEU B 10 -15.34 73.73 REMARK 500 ASP B 25 162.77 69.90 REMARK 500 ALA B 26 60.61 -151.81 REMARK 500 HIS B 48 -175.56 -178.35 REMARK 500 ASN B 83 97.32 -69.77 REMARK 500 ASN B 119 -144.81 69.69 REMARK 500 SER B 191 174.74 175.31 REMARK 500 CYS B 209 57.39 -143.56 REMARK 500 ASP B 216 69.23 -110.12 REMARK 500 LYS B 238 -88.82 -65.97 REMARK 500 TYR B 249 34.53 -82.33 REMARK 500 PRO B 274 -9.15 -59.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 NE2 REMARK 620 2 HIS A 50 ND1 105.0 REMARK 620 3 HIS A 134 NE2 96.6 92.5 REMARK 620 4 ASP A 190 OD1 84.0 170.9 88.1 REMARK 620 5 HOH A1416 O 124.6 96.3 133.3 76.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 NE2 REMARK 620 2 ASP A 190 OD1 102.9 REMARK 620 3 HIS A 244 NE2 110.8 104.8 REMARK 620 4 HOH A1416 O 118.9 94.1 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 48 NE2 REMARK 620 2 HIS B 50 ND1 110.2 REMARK 620 3 ASP B 190 OD1 81.5 167.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 53 NE2 REMARK 620 2 ASP B 190 OD1 100.5 REMARK 620 3 HIS B 244 NE2 114.7 100.2 REMARK 620 4 HOH B2373 O 127.4 99.4 108.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000499.2 RELATED DB: TARGETDB DBREF 2E7Y A 1 280 UNP Q9WZW8 Q9WZW8_THEMA 1 280 DBREF 2E7Y B 1 280 UNP Q9WZW8 Q9WZW8_THEMA 1 280 SEQRES 1 A 280 MET ASN ILE ILE GLY PHE SER LYS ALA LEU PHE SER THR SEQRES 2 A 280 TRP ILE TYR TYR SER PRO GLU ARG ILE LEU PHE ASP ALA SEQRES 3 A 280 GLY GLU GLY VAL SER THR THR LEU GLY SER LYS VAL TYR SEQRES 4 A 280 ALA PHE LYS TYR VAL PHE LEU THR HIS GLY HIS VAL ASP SEQRES 5 A 280 HIS ILE ALA GLY LEU TRP GLY VAL VAL ASN ILE ARG ASN SEQRES 6 A 280 ASN GLY MET GLY ASP ARG GLU LYS PRO LEU ASP VAL PHE SEQRES 7 A 280 TYR PRO GLU GLY ASN ARG ALA VAL GLU GLU TYR THR GLU SEQRES 8 A 280 PHE ILE LYS ARG ALA ASN PRO ASP LEU ARG PHE SER PHE SEQRES 9 A 280 ASN VAL HIS PRO LEU LYS GLU GLY GLU ARG VAL PHE LEU SEQRES 10 A 280 ARG ASN ALA GLY GLY PHE LYS ARG TYR VAL GLN PRO PHE SEQRES 11 A 280 ARG THR LYS HIS VAL SER SER GLU VAL SER PHE GLY TYR SEQRES 12 A 280 HIS ILE PHE GLU VAL ARG ARG LYS LEU LYS LYS GLU PHE SEQRES 13 A 280 GLN GLY LEU ASP SER LYS GLU ILE SER ARG LEU VAL LYS SEQRES 14 A 280 GLU LYS GLY ARG ASP PHE VAL THR GLU GLU TYR HIS LYS SEQRES 15 A 280 LYS VAL LEU THR ILE SER GLY ASP SER LEU ALA LEU ASP SEQRES 16 A 280 PRO GLU GLU ILE ARG GLY THR GLU LEU LEU ILE HIS GLU SEQRES 17 A 280 CYS THR PHE LEU ASP ALA ARG ASP ARG ARG TYR LYS ASN SEQRES 18 A 280 HIS ALA ALA ILE ASP GLU VAL MET GLU SER VAL LYS ALA SEQRES 19 A 280 ALA GLY VAL LYS LYS VAL ILE LEU TYR HIS ILE SER THR SEQRES 20 A 280 ARG TYR ILE ARG GLN LEU LYS SER VAL ILE LYS LYS TYR SEQRES 21 A 280 ARG GLU GLU MET PRO ASP VAL GLU ILE LEU TYR MET ASP SEQRES 22 A 280 PRO ARG LYS VAL PHE GLU MET SEQRES 1 B 280 MET ASN ILE ILE GLY PHE SER LYS ALA LEU PHE SER THR SEQRES 2 B 280 TRP ILE TYR TYR SER PRO GLU ARG ILE LEU PHE ASP ALA SEQRES 3 B 280 GLY GLU GLY VAL SER THR THR LEU GLY SER LYS VAL TYR SEQRES 4 B 280 ALA PHE LYS TYR VAL PHE LEU THR HIS GLY HIS VAL ASP SEQRES 5 B 280 HIS ILE ALA GLY LEU TRP GLY VAL VAL ASN ILE ARG ASN SEQRES 6 B 280 ASN GLY MET GLY ASP ARG GLU LYS PRO LEU ASP VAL PHE SEQRES 7 B 280 TYR PRO GLU GLY ASN ARG ALA VAL GLU GLU TYR THR GLU SEQRES 8 B 280 PHE ILE LYS ARG ALA ASN PRO ASP LEU ARG PHE SER PHE SEQRES 9 B 280 ASN VAL HIS PRO LEU LYS GLU GLY GLU ARG VAL PHE LEU SEQRES 10 B 280 ARG ASN ALA GLY GLY PHE LYS ARG TYR VAL GLN PRO PHE SEQRES 11 B 280 ARG THR LYS HIS VAL SER SER GLU VAL SER PHE GLY TYR SEQRES 12 B 280 HIS ILE PHE GLU VAL ARG ARG LYS LEU LYS LYS GLU PHE SEQRES 13 B 280 GLN GLY LEU ASP SER LYS GLU ILE SER ARG LEU VAL LYS SEQRES 14 B 280 GLU LYS GLY ARG ASP PHE VAL THR GLU GLU TYR HIS LYS SEQRES 15 B 280 LYS VAL LEU THR ILE SER GLY ASP SER LEU ALA LEU ASP SEQRES 16 B 280 PRO GLU GLU ILE ARG GLY THR GLU LEU LEU ILE HIS GLU SEQRES 17 B 280 CYS THR PHE LEU ASP ALA ARG ASP ARG ARG TYR LYS ASN SEQRES 18 B 280 HIS ALA ALA ILE ASP GLU VAL MET GLU SER VAL LYS ALA SEQRES 19 B 280 ALA GLY VAL LYS LYS VAL ILE LEU TYR HIS ILE SER THR SEQRES 20 B 280 ARG TYR ILE ARG GLN LEU LYS SER VAL ILE LYS LYS TYR SEQRES 21 B 280 ARG GLU GLU MET PRO ASP VAL GLU ILE LEU TYR MET ASP SEQRES 22 B 280 PRO ARG LYS VAL PHE GLU MET HET ZN A1301 1 HET ZN A1302 1 HET SO4 A 501 5 HET SO4 A 502 5 HET PGO A 601 5 HET PGO A 604 5 HET ZN B2301 1 HET ZN B2302 1 HET PGO B 602 5 HET PGO B 603 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 PGO 4(C3 H8 O2) FORMUL 13 HOH *325(H2 O) HELIX 1 1 GLY A 29 GLY A 35 1 7 HELIX 2 2 SER A 36 PHE A 41 5 6 HELIX 3 3 HIS A 50 ALA A 55 1 6 HELIX 4 4 GLY A 56 MET A 68 1 13 HELIX 5 5 GLY A 69 GLU A 72 5 4 HELIX 6 6 ASN A 83 ASN A 97 1 15 HELIX 7 7 PRO A 98 ARG A 101 5 4 HELIX 8 8 LYS A 154 GLN A 157 5 4 HELIX 9 9 ASP A 160 GLY A 172 1 13 HELIX 10 10 ARG A 173 PHE A 175 5 3 HELIX 11 11 ASP A 195 ARG A 200 1 6 HELIX 12 12 ALA A 224 GLY A 236 1 13 HELIX 13 13 SER A 246 ARG A 248 5 3 HELIX 14 14 TYR A 249 MET A 264 1 16 HELIX 15 15 GLY B 29 GLY B 35 1 7 HELIX 16 16 SER B 36 PHE B 41 5 6 HELIX 17 17 HIS B 50 ALA B 55 1 6 HELIX 18 18 GLY B 56 ASN B 66 1 11 HELIX 19 19 ASN B 83 ASN B 97 1 15 HELIX 20 20 PRO B 98 ARG B 101 5 4 HELIX 21 21 LYS B 154 GLN B 157 5 4 HELIX 22 22 ASP B 160 GLY B 172 1 13 HELIX 23 23 GLY B 172 VAL B 176 1 5 HELIX 24 24 ASP B 195 ARG B 200 1 6 HELIX 25 25 ASP B 213 ARG B 217 5 5 HELIX 26 26 ALA B 224 ALA B 235 1 12 HELIX 27 27 ARG B 251 MET B 264 1 14 SHEET 1 A 7 PHE A 104 LEU A 109 0 SHEET 2 A 7 LEU A 75 PRO A 80 1 N VAL A 77 O HIS A 107 SHEET 3 A 7 TYR A 43 PHE A 45 1 N VAL A 44 O PHE A 78 SHEET 4 A 7 ILE A 22 ALA A 26 1 N LEU A 23 O PHE A 45 SHEET 5 A 7 SER A 12 TYR A 17 -1 N ILE A 15 O PHE A 24 SHEET 6 A 7 ILE A 3 LYS A 8 -1 N ILE A 4 O TYR A 16 SHEET 7 A 7 PHE A 278 MET A 280 -1 O PHE A 278 N GLY A 5 SHEET 1 B 7 VAL A 115 PHE A 116 0 SHEET 2 B 7 ARG A 125 ARG A 131 -1 O VAL A 127 N VAL A 115 SHEET 3 B 7 PHE A 141 LEU A 152 -1 O PHE A 146 N TYR A 126 SHEET 4 B 7 THR A 177 ILE A 187 -1 O TYR A 180 N ARG A 149 SHEET 5 B 7 LEU A 205 GLU A 208 1 O ILE A 206 N THR A 186 SHEET 6 B 7 LYS A 239 TYR A 243 1 O ILE A 241 N LEU A 205 SHEET 7 B 7 GLU A 268 TYR A 271 1 O LEU A 270 N VAL A 240 SHEET 1 C 7 PHE B 104 LEU B 109 0 SHEET 2 C 7 LEU B 75 PRO B 80 1 N VAL B 77 O ASN B 105 SHEET 3 C 7 TYR B 43 PHE B 45 1 N VAL B 44 O PHE B 78 SHEET 4 C 7 ILE B 22 PHE B 24 1 N LEU B 23 O TYR B 43 SHEET 5 C 7 SER B 12 TYR B 17 -1 N ILE B 15 O PHE B 24 SHEET 6 C 7 ILE B 3 LYS B 8 -1 N ILE B 4 O TYR B 16 SHEET 7 C 7 PHE B 278 MET B 280 -1 O PHE B 278 N GLY B 5 SHEET 1 D 7 VAL B 115 PHE B 116 0 SHEET 2 D 7 ARG B 125 ARG B 131 -1 O VAL B 127 N VAL B 115 SHEET 3 D 7 PHE B 141 LEU B 152 -1 O PHE B 146 N TYR B 126 SHEET 4 D 7 THR B 177 ILE B 187 -1 O LYS B 182 N GLU B 147 SHEET 5 D 7 LEU B 204 GLU B 208 1 O LEU B 204 N THR B 186 SHEET 6 D 7 LYS B 239 TYR B 243 1 O ILE B 241 N LEU B 205 SHEET 7 D 7 GLU B 268 TYR B 271 1 O LEU B 270 N VAL B 240 LINK NE2 HIS A 48 ZN ZN A1302 1555 1555 2.37 LINK ND1 HIS A 50 ZN ZN A1302 1555 1555 2.49 LINK NE2 HIS A 53 ZN ZN A1301 1555 1555 2.16 LINK NE2 HIS A 134 ZN ZN A1302 1555 1555 2.60 LINK OD1 ASP A 190 ZN ZN A1301 1555 1555 1.98 LINK OD1 ASP A 190 ZN ZN A1302 1555 1555 2.51 LINK NE2 HIS A 244 ZN ZN A1301 1555 1555 2.09 LINK ZN ZN A1301 O HOH A1416 1555 1555 2.21 LINK ZN ZN A1302 O HOH A1416 1555 1555 2.44 LINK NE2 HIS B 48 ZN ZN B2302 1555 1555 2.37 LINK ND1 HIS B 50 ZN ZN B2302 1555 1555 2.47 LINK NE2 HIS B 53 ZN ZN B2301 1555 1555 2.19 LINK OD1 ASP B 190 ZN ZN B2301 1555 1555 2.02 LINK OD1 ASP B 190 ZN ZN B2302 1555 1555 2.52 LINK NE2 HIS B 244 ZN ZN B2301 1555 1555 2.20 LINK ZN ZN B2301 O HOH B2373 1555 1555 2.04 SITE 1 AC1 6 ASP A 52 HIS A 53 ASP A 190 HIS A 244 SITE 2 AC1 6 ZN A1302 HOH A1416 SITE 1 AC2 6 HIS A 48 HIS A 50 HIS A 134 ASP A 190 SITE 2 AC2 6 ZN A1301 HOH A1416 SITE 1 AC3 5 ALA A 120 GLY A 121 ARG A 149 TYR A 180 SITE 2 AC3 5 LYS A 182 SITE 1 AC4 5 LYS A 254 ARG A 261 TYR A 271 HOH A1305 SITE 2 AC4 5 HOH A1444 SITE 1 AC5 6 ASP B 52 HIS B 53 ASP B 190 HIS B 244 SITE 2 AC5 6 ZN B2302 HOH B2373 SITE 1 AC6 5 HIS B 48 HIS B 50 ASP B 190 ZN B2301 SITE 2 AC6 5 HOH B2373 SITE 1 AC7 6 TRP A 14 GLU A 28 GLY A 29 THR A 33 SITE 2 AC7 6 THR B 32 HOH B2368 SITE 1 AC8 4 ARG A 150 GLU A 178 GLU A 179 HOH A1354 SITE 1 AC9 6 TRP B 14 GLU B 28 GLY B 29 VAL B 30 SITE 2 AC9 6 THR B 33 HOH B2368 SITE 1 BC1 4 LYS B 254 LYS B 258 ARG B 261 TYR B 271 CRYST1 150.299 172.694 64.886 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015412 0.00000