PDB Short entry for 2E8J HEADER TRANSPORT PROTEIN 21-JAN-07 2E8J TITLE SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 2A, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DYNEIN LIGHT CHAIN ROADBLOCK-TYPE 1, DL2A, DYNEIN-ASSOCIATED COMPND 5 PROTEIN KM23, BITHORAXOID-LIKE PROTEIN, BLP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS HOMODIMER, TRANSPORT PROTEIN EXPDTA SOLUTION NMR AUTHOR T.KOUNO,Y.NABESHIMA,M.MIZUGUCHI,K.KAWANO REVDAT 3 09-MAR-22 2E8J 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E8J 1 VERSN REVDAT 1 22-JAN-08 2E8J 0 JRNL AUTH T.KOUNO,Y.NABESHIMA,M.MIZUGUCHI,K.KAWANO JRNL TITL SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 2A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, X-PLOR 3.1F REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026359. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM DL2A U-15, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 20MM NACL; REMARK 210 0.1MM EDTA; 95% H2O, 5% D2O; REMARK 210 0.6MM DL2A U-15, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 20MM NACL; REMARK 210 0.1MM EDTA; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP 4.3.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 -64.22 -101.97 REMARK 500 GLN A 14 165.12 -41.87 REMARK 500 VAL A 17 106.79 -51.57 REMARK 500 ASN A 24 -152.29 -111.66 REMARK 500 ASP A 35 -88.97 -43.01 REMARK 500 ASN A 36 -54.29 -153.11 REMARK 500 LEU A 45 -72.76 -118.76 REMARK 500 ALA A 53 -60.23 -92.13 REMARK 500 ASP A 61 102.52 -179.67 REMARK 500 ASN A 64 59.87 -94.23 REMARK 500 ASP A 65 164.37 -44.22 REMARK 500 THR A 67 -38.58 -157.07 REMARK 500 ARG A 70 112.99 -168.46 REMARK 500 ASN A 76 -150.97 -179.03 REMARK 500 ALA A 81 104.85 -178.69 REMARK 500 ASP A 83 -156.92 -72.16 REMARK 500 THR A 95 76.39 40.24 REMARK 500 LEU B 8 -62.97 -101.23 REMARK 500 GLN B 14 165.24 -40.04 REMARK 500 LYS B 15 -85.25 -89.17 REMARK 500 ASN B 24 -138.06 -113.47 REMARK 500 SER B 32 100.48 -162.08 REMARK 500 THR B 33 38.58 -92.06 REMARK 500 ASP B 35 -168.93 -53.70 REMARK 500 ASP B 61 108.68 -174.32 REMARK 500 ASN B 64 65.00 -107.78 REMARK 500 THR B 67 -42.63 -162.45 REMARK 500 ARG B 70 120.59 179.47 REMARK 500 SER B 73 -140.80 -95.36 REMARK 500 ASN B 76 -156.19 -147.76 REMARK 500 ALA B 81 100.66 -177.77 REMARK 500 ASP B 83 -155.86 -81.95 REMARK 500 ASP B 85 -0.34 -142.06 REMARK 500 PRO B 94 -158.55 -73.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 10 0.27 SIDE CHAIN REMARK 500 ARG A 54 0.28 SIDE CHAIN REMARK 500 ARG A 58 0.24 SIDE CHAIN REMARK 500 ARG A 70 0.24 SIDE CHAIN REMARK 500 ARG A 72 0.17 SIDE CHAIN REMARK 500 ARG B 10 0.32 SIDE CHAIN REMARK 500 ARG B 54 0.30 SIDE CHAIN REMARK 500 ARG B 58 0.27 SIDE CHAIN REMARK 500 ARG B 72 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2E8J A 1 96 UNP Q9NP97 DLC2A_HUMAN 1 96 DBREF 2E8J B 1 96 UNP Q9NP97 DLC2A_HUMAN 1 96 SEQADV 2E8J GLY A -4 Q9NP97 EXPRESSION TAG SEQADV 2E8J PRO A -3 Q9NP97 EXPRESSION TAG SEQADV 2E8J LEU A -2 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY A -1 Q9NP97 EXPRESSION TAG SEQADV 2E8J SER A 0 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY B -4 Q9NP97 EXPRESSION TAG SEQADV 2E8J PRO B -3 Q9NP97 EXPRESSION TAG SEQADV 2E8J LEU B -2 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY B -1 Q9NP97 EXPRESSION TAG SEQADV 2E8J SER B 0 Q9NP97 EXPRESSION TAG SEQRES 1 A 101 GLY PRO LEU GLY SER MET ALA GLU VAL GLU GLU THR LEU SEQRES 2 A 101 LYS ARG LEU GLN SER GLN LYS GLY VAL GLN GLY ILE ILE SEQRES 3 A 101 VAL VAL ASN THR GLU GLY ILE PRO ILE LYS SER THR MET SEQRES 4 A 101 ASP ASN PRO THR THR THR GLN TYR ALA SER LEU MET HIS SEQRES 5 A 101 SER PHE ILE LEU LYS ALA ARG SER THR VAL ARG ASP ILE SEQRES 6 A 101 ASP PRO GLN ASN ASP LEU THR PHE LEU ARG ILE ARG SER SEQRES 7 A 101 LYS LYS ASN GLU ILE MET VAL ALA PRO ASP LYS ASP TYR SEQRES 8 A 101 PHE LEU ILE VAL ILE GLN ASN PRO THR GLU SEQRES 1 B 101 GLY PRO LEU GLY SER MET ALA GLU VAL GLU GLU THR LEU SEQRES 2 B 101 LYS ARG LEU GLN SER GLN LYS GLY VAL GLN GLY ILE ILE SEQRES 3 B 101 VAL VAL ASN THR GLU GLY ILE PRO ILE LYS SER THR MET SEQRES 4 B 101 ASP ASN PRO THR THR THR GLN TYR ALA SER LEU MET HIS SEQRES 5 B 101 SER PHE ILE LEU LYS ALA ARG SER THR VAL ARG ASP ILE SEQRES 6 B 101 ASP PRO GLN ASN ASP LEU THR PHE LEU ARG ILE ARG SER SEQRES 7 B 101 LYS LYS ASN GLU ILE MET VAL ALA PRO ASP LYS ASP TYR SEQRES 8 B 101 PHE LEU ILE VAL ILE GLN ASN PRO THR GLU HELIX 1 1 MET A 1 GLN A 14 1 14 HELIX 2 2 PRO A 37 LEU A 45 1 9 HELIX 3 3 LEU A 45 ASP A 61 1 17 HELIX 4 4 MET B 1 GLN B 14 1 14 HELIX 5 5 PRO B 37 LEU B 45 1 9 HELIX 6 6 LEU B 45 ASP B 61 1 17 SHEET 1 A 8 PRO A 29 THR A 33 0 SHEET 2 A 8 VAL A 17 VAL A 23 -1 N ILE A 20 O THR A 33 SHEET 3 A 8 PHE A 87 GLN A 92 -1 O ILE A 91 N GLN A 18 SHEET 4 A 8 GLU A 77 PRO A 82 -1 N GLU A 77 O GLN A 92 SHEET 5 A 8 PHE A 68 SER A 73 -1 N ILE A 71 O ILE A 78 SHEET 6 A 8 LEU B 66 ARG B 72 -1 O ARG B 72 N PHE A 68 SHEET 7 A 8 GLU B 77 PRO B 82 -1 O VAL B 80 N LEU B 69 SHEET 8 A 8 PHE B 87 ILE B 89 -1 O LEU B 88 N ALA B 81 SHEET 1 B 2 ILE B 20 VAL B 22 0 SHEET 2 B 2 LYS B 31 THR B 33 -1 O THR B 33 N ILE B 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000