PDB Short entry for 2EE4 HEADER HYDROLASE 15-FEB-07 2EE4 TITLE SOLUTION STRUCTURE OF THE RHOGAP DOMAIN FROM HUMAN RHO GTPASE TITLE 2 ACTIVATING PROTEIN 5 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE ACTIVATING PROTEIN 5 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RHOGAP DOMAIN; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060123-14; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ALL ALPHA PROTEIN, GTPASE-ACTIVATING PROTEIN FOR RHO FAMILY MEMBERS, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EE4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EE4 1 VERSN REVDAT 1 21-AUG-07 2EE4 0 JRNL AUTH T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RHOGAP DOMAIN FROM HUMAN RHO JRNL TITL 2 GTPASE ACTIVATING PROTEIN 5 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EE4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026551. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM RHOGAP DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE 20060524, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9823, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 41 40.98 -96.93 REMARK 500 1 ASN A 54 97.70 -43.01 REMARK 500 1 LEU A 94 152.09 -35.56 REMARK 500 1 PRO A 132 2.67 -69.79 REMARK 500 1 THR A 169 -65.94 -107.06 REMARK 500 1 LEU A 170 -36.15 -33.85 REMARK 500 1 ARG A 178 79.08 -64.09 REMARK 500 1 THR A 183 142.89 -37.76 REMARK 500 1 LYS A 185 45.71 -89.43 REMARK 500 1 CYS A 198 -38.60 -38.06 REMARK 500 1 PHE A 200 -18.56 -49.73 REMARK 500 1 PHE A 202 -54.94 -120.99 REMARK 500 2 GLN A 18 -34.55 -39.11 REMARK 500 2 ASN A 54 102.84 -39.04 REMARK 500 2 ILE A 61 -38.75 -37.21 REMARK 500 2 LEU A 94 152.22 -38.57 REMARK 500 2 LEU A 98 -34.40 -34.45 REMARK 500 2 PRO A 132 3.02 -69.69 REMARK 500 2 THR A 169 -66.96 -99.23 REMARK 500 2 PRO A 173 97.68 -69.76 REMARK 500 2 ARG A 178 40.70 -82.18 REMARK 500 2 CYS A 198 -37.04 -38.69 REMARK 500 2 PHE A 202 -51.00 -122.73 REMARK 500 2 ASN A 204 27.18 43.92 REMARK 500 3 SER A 5 40.72 -94.73 REMARK 500 3 MET A 15 159.60 -48.31 REMARK 500 3 GLN A 18 -38.08 -36.51 REMARK 500 3 THR A 41 38.67 -81.51 REMARK 500 3 ASN A 54 100.08 -36.48 REMARK 500 3 LEU A 94 152.58 -40.99 REMARK 500 3 HIS A 131 140.90 -34.88 REMARK 500 3 PRO A 132 3.16 -69.70 REMARK 500 3 ARG A 172 139.05 -32.81 REMARK 500 3 PRO A 173 -172.97 -69.74 REMARK 500 3 ARG A 178 101.96 -35.93 REMARK 500 3 GLU A 179 98.83 -34.63 REMARK 500 3 GLN A 199 -71.67 -71.28 REMARK 500 3 ASN A 204 28.08 40.85 REMARK 500 4 SER A 2 -60.06 -98.73 REMARK 500 4 PHE A 13 124.92 -37.39 REMARK 500 4 GLN A 18 -35.03 -39.58 REMARK 500 4 THR A 41 43.07 -80.97 REMARK 500 4 LEU A 43 33.12 -90.65 REMARK 500 4 TYR A 49 40.55 -107.31 REMARK 500 4 LEU A 94 152.08 -35.45 REMARK 500 4 PRO A 132 3.92 -69.74 REMARK 500 4 THR A 169 -67.69 -106.26 REMARK 500 4 PRO A 173 3.39 -69.84 REMARK 500 4 GLU A 176 -37.00 -34.01 REMARK 500 4 ARG A 178 97.81 -42.98 REMARK 500 REMARK 500 THIS ENTRY HAS 301 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002116.1 RELATED DB: TARGETDB DBREF 2EE4 A 8 209 UNP Q59ER0 Q59ER0_HUMAN 891 1092 SEQADV 2EE4 GLY A 1 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 SER A 2 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 SER A 3 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 GLY A 4 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 SER A 5 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 SER A 6 UNP Q59ER0 EXPRESSION TAG SEQADV 2EE4 GLY A 7 UNP Q59ER0 EXPRESSION TAG SEQRES 1 A 209 GLY SER SER GLY SER SER GLY TRP GLU SER ASN TYR PHE SEQRES 2 A 209 GLY MET PRO LEU GLN ASP LEU VAL THR ALA GLU LYS PRO SEQRES 3 A 209 ILE PRO LEU PHE VAL GLU LYS CYS VAL GLU PHE ILE GLU SEQRES 4 A 209 ASP THR GLY LEU CYS THR GLU GLY LEU TYR ARG VAL SER SEQRES 5 A 209 GLY ASN LYS THR ASP GLN ASP ASN ILE GLN LYS GLN PHE SEQRES 6 A 209 ASP GLN ASP HIS ASN ILE ASN LEU VAL SER MET GLU VAL SEQRES 7 A 209 THR VAL ASN ALA VAL ALA GLY ALA LEU LYS ALA PHE PHE SEQRES 8 A 209 ALA ASP LEU PRO ASP PRO LEU ILE PRO TYR SER LEU HIS SEQRES 9 A 209 PRO GLU LEU LEU GLU ALA ALA LYS ILE PRO ASP LYS THR SEQRES 10 A 209 GLU ARG LEU HIS ALA LEU LYS GLU ILE VAL LYS LYS PHE SEQRES 11 A 209 HIS PRO VAL ASN TYR ASP VAL PHE ARG TYR VAL ILE THR SEQRES 12 A 209 HIS LEU ASN ARG VAL SER GLN GLN HIS LYS ILE ASN LEU SEQRES 13 A 209 MET THR ALA ASP ASN LEU SER ILE CYS PHE TRP PRO THR SEQRES 14 A 209 LEU MET ARG PRO ASP PHE GLU ASN ARG GLU PHE LEU SER SEQRES 15 A 209 THR THR LYS ILE HIS GLN SER VAL VAL GLU THR PHE ILE SEQRES 16 A 209 GLN GLN CYS GLN PHE PHE PHE TYR ASN GLY GLU ILE VAL SEQRES 17 A 209 GLU HELIX 1 1 PRO A 16 VAL A 21 1 6 HELIX 2 2 PRO A 28 THR A 41 1 14 HELIX 3 3 ASN A 54 ASP A 68 1 15 HELIX 4 4 ASN A 72 GLU A 77 1 6 HELIX 5 5 THR A 79 LEU A 94 1 16 HELIX 6 6 LEU A 103 LYS A 112 1 10 HELIX 7 7 ASP A 115 VAL A 127 1 13 HELIX 8 8 VAL A 133 GLN A 151 1 19 HELIX 9 9 GLN A 151 LEU A 156 1 6 HELIX 10 10 THR A 158 MET A 171 1 14 HELIX 11 11 ILE A 186 GLN A 197 1 12 HELIX 12 12 GLN A 197 PHE A 202 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000