PDB Short entry for 2EE8 HEADER GENE REGULATION 15-FEB-07 2EE8 TITLE SOLUTION STRUCTURE OF THREE ZF-C2H2 DOMAINS FROM MOUSE PROTEIN ODD- TITLE 2 SKIPPED-RELATED 2 SPLICING ISOFORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ODD-SKIPPED-RELATED 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOAMINS; COMPND 5 SYNONYM: PROTEIN ODD-SKIPPED-RELATED 2 SPLICING ISOFORM 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: OSR2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060529-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC BINDING, ZF-C2H2 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EE8 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EE8 1 VERSN REVDAT 1 21-AUG-07 2EE8 0 JRNL AUTH T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THREE ZF-C2H2 DOMAINS FROM MOUSE JRNL TITL 2 PROTEIN ODD-SKIPPED-RELATED 2 SPLICING ISOFORM 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE EACH STRUCTURE CAN'T BE REMARK 3 SUPERIMPOSED SINCE THE STRUCTURE HAS THREE ZF-C2H2 DOMAINS AND REMARK 3 THESE DOMAINS ARE FLEXIBLE REMARK 4 REMARK 4 2EE8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026555. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.86MM ZF-C2H2 DOMAINS U-15N, REMARK 210 13C; 20MM D-TRIS-HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060524, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9823, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 20 174.75 -50.61 REMARK 500 1 CYS A 48 -178.05 -57.55 REMARK 500 1 ILE A 50 -74.24 -117.98 REMARK 500 1 HIS A 52 46.12 37.96 REMARK 500 1 ASP A 59 -28.94 -37.75 REMARK 500 1 ARG A 65 -30.47 -39.12 REMARK 500 1 GLU A 78 -72.17 -57.96 REMARK 500 1 PHE A 83 106.80 -59.92 REMARK 500 1 HIS A 96 43.54 -81.05 REMARK 500 1 SER A 100 44.93 71.26 REMARK 500 2 PRO A 11 -169.10 -69.76 REMARK 500 2 SER A 12 -177.45 -175.03 REMARK 500 2 LYS A 15 145.35 -174.48 REMARK 500 2 CYS A 20 178.19 -49.81 REMARK 500 2 CYS A 48 179.72 -59.47 REMARK 500 2 HIS A 52 44.74 34.86 REMARK 500 2 LYS A 81 172.41 -55.56 REMARK 500 2 PRO A 102 -174.59 -69.77 REMARK 500 3 SER A 3 143.29 -171.08 REMARK 500 3 PRO A 11 -177.57 -69.79 REMARK 500 3 THR A 14 110.64 -174.40 REMARK 500 3 LYS A 15 144.15 -173.84 REMARK 500 3 CYS A 20 157.60 -48.65 REMARK 500 3 HIS A 40 -63.16 -94.68 REMARK 500 3 THR A 41 -31.65 -36.04 REMARK 500 3 ASP A 42 41.03 -85.02 REMARK 500 3 ILE A 50 -72.46 -120.10 REMARK 500 3 HIS A 68 75.85 -66.83 REMARK 500 3 GLU A 71 138.36 -36.49 REMARK 500 3 CYS A 76 158.77 -39.19 REMARK 500 3 HIS A 96 37.32 -96.28 REMARK 500 4 LEU A 10 127.72 -173.00 REMARK 500 4 CYS A 20 167.05 -46.77 REMARK 500 4 ILE A 50 -72.15 -113.21 REMARK 500 4 HIS A 52 50.17 38.53 REMARK 500 4 LYS A 70 137.80 -171.39 REMARK 500 4 CYS A 76 156.30 -43.54 REMARK 500 4 HIS A 96 56.08 -97.20 REMARK 500 4 SER A 101 135.96 -39.35 REMARK 500 5 ARG A 9 -73.24 -42.48 REMARK 500 5 PRO A 11 -177.42 -69.74 REMARK 500 5 SER A 12 107.89 -169.28 REMARK 500 5 CYS A 20 165.91 -46.60 REMARK 500 5 ARG A 44 124.32 -38.38 REMARK 500 5 TYR A 46 100.03 -55.41 REMARK 500 5 CYS A 48 -179.10 -68.42 REMARK 500 5 ILE A 50 -74.41 -111.01 REMARK 500 5 ARG A 65 -19.97 -46.50 REMARK 500 5 SER A 69 177.49 -59.08 REMARK 500 5 LYS A 70 -176.00 -61.30 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 23 SG 117.2 REMARK 620 3 HIS A 36 NE2 108.8 108.1 REMARK 620 4 HIS A 40 NE2 110.9 111.1 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 CYS A 51 SG 101.1 REMARK 620 3 HIS A 64 NE2 105.0 106.8 REMARK 620 4 HIS A 68 NE2 103.9 110.8 126.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 CYS A 79 SG 111.4 REMARK 620 3 HIS A 92 NE2 114.3 104.1 REMARK 620 4 HIS A 96 NE2 112.0 114.4 100.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002014969.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN IS SPLICING ISOFORM OF Q91ZD1 REMARK 999 AND ITS SEQUENCE NUMBER IS UNP Q91ZD1-2 DBREF 2EE8 A 8 100 UNP Q91ZD1 OSR2_MOUSE 162 254 SEQADV 2EE8 GLY A 1 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 SER A 2 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 SER A 3 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 GLY A 4 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 SER A 5 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 SER A 6 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 GLY A 7 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 THR A 99 UNP Q91ZD1 GLU 253 SEE REMARK 999 SEQADV 2EE8 SER A 101 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 PRO A 102 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 THR A 103 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 ALA A 104 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 ALA A 105 UNP Q91ZD1 EXPRESSION TAG SEQADV 2EE8 SER A 106 UNP Q91ZD1 EXPRESSION TAG SEQRES 1 A 106 GLY SER SER GLY SER SER GLY GLY ARG LEU PRO SER LYS SEQRES 2 A 106 THR LYS LYS GLU PHE ILE CYS LYS PHE CYS GLY ARG HIS SEQRES 3 A 106 PHE THR LYS SER TYR ASN LEU LEU ILE HIS GLU ARG THR SEQRES 4 A 106 HIS THR ASP GLU ARG PRO TYR THR CYS ASP ILE CYS HIS SEQRES 5 A 106 LYS ALA PHE ARG ARG GLN ASP HIS LEU ARG ASP HIS ARG SEQRES 6 A 106 TYR ILE HIS SER LYS GLU LYS PRO PHE LYS CYS GLN GLU SEQRES 7 A 106 CYS GLY LYS GLY PHE CYS GLN SER ARG THR LEU ALA VAL SEQRES 8 A 106 HIS LYS THR LEU HIS MET GLN THR SER SER PRO THR ALA SEQRES 9 A 106 ALA SER HET ZN A 301 1 HET ZN A 501 1 HET ZN A 701 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 LYS A 29 THR A 41 1 13 HELIX 2 2 ARG A 57 ARG A 65 1 9 HELIX 3 3 TYR A 66 HIS A 68 5 3 HELIX 4 4 GLN A 85 HIS A 96 1 12 LINK SG CYS A 20 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 23 ZN ZN A 301 1555 1555 2.19 LINK NE2 HIS A 36 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 40 ZN ZN A 301 1555 1555 1.92 LINK SG CYS A 48 ZN ZN A 501 1555 1555 2.38 LINK SG CYS A 51 ZN ZN A 501 1555 1555 2.23 LINK NE2 HIS A 64 ZN ZN A 501 1555 1555 1.92 LINK NE2 HIS A 68 ZN ZN A 501 1555 1555 2.10 LINK SG CYS A 76 ZN ZN A 701 1555 1555 2.36 LINK SG CYS A 79 ZN ZN A 701 1555 1555 2.39 LINK NE2 HIS A 92 ZN ZN A 701 1555 1555 1.96 LINK NE2 HIS A 96 ZN ZN A 701 1555 1555 1.96 SITE 1 AC1 4 CYS A 20 CYS A 23 HIS A 36 HIS A 40 SITE 1 AC2 4 CYS A 48 CYS A 51 HIS A 64 HIS A 68 SITE 1 AC3 4 CYS A 76 CYS A 79 HIS A 92 HIS A 96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000