PDB Short entry for 2ELY HEADER TRANSCRIPTION 28-MAR-07 2ELY TITLE SOLUTION STRUCTURE OF THE THIRD ZF-C2H2 DOMAIN FROM HUMAN ZINC FINGER TITLE 2 PROTEIN 224 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 224; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 27, ZINC FINGER PROTEIN 233, ZINC FINGER COMPND 6 PROTEIN 255, BONE MARROW ZINC FINGER 2, BMZF-2, ZINC FINGER PROTEIN COMPND 7 KOX22; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF224; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-19; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS DNA-BINDING, METAL-BINDING, NUCLEAR PROTEIN, PHOSPHORYLATION, KEYWDS 2 POLYMORPHISM, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 3 ZINC, ZINC-FINGER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 4 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ELY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ELY 1 VERSN REVDAT 1 02-OCT-07 2ELY 0 JRNL AUTH C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD ZF-C2H2 DOMAIN FROM HUMAN JRNL TITL 2 ZINC FINGER PROTEIN 224 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ELY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026828. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 50UM ZNCL2; 1MM IDA, 90% H2O; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA NMR 4.3.2, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, KUJIRA REMARK 210 0.9817, CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 20 -177.30 -50.33 REMARK 500 1 THR A 36 83.15 -63.66 REMARK 500 1 LYS A 39 158.25 -39.74 REMARK 500 1 PRO A 40 86.74 -69.76 REMARK 500 1 PRO A 43 95.05 -69.74 REMARK 500 2 LYS A 20 -174.24 -64.93 REMARK 500 2 SER A 45 -60.92 -125.05 REMARK 500 3 LYS A 20 177.39 -59.92 REMARK 500 3 GLU A 38 129.70 -36.98 REMARK 500 4 LYS A 20 173.75 -54.71 REMARK 500 4 THR A 36 164.09 -49.24 REMARK 500 5 LYS A 20 -174.20 -53.23 REMARK 500 6 SER A 3 157.63 -46.49 REMARK 500 6 LYS A 20 -177.20 -62.95 REMARK 500 6 GLU A 38 39.16 35.89 REMARK 500 6 LYS A 39 70.75 -111.55 REMARK 500 7 SER A 5 147.73 -171.29 REMARK 500 7 LYS A 20 -178.10 -50.82 REMARK 500 7 THR A 36 100.05 -46.56 REMARK 500 8 LYS A 20 -175.06 -51.36 REMARK 500 8 THR A 36 74.65 -67.43 REMARK 500 8 GLU A 38 38.08 36.58 REMARK 500 8 PRO A 40 -171.97 -69.75 REMARK 500 8 SER A 44 41.65 -104.09 REMARK 500 8 SER A 45 163.89 -43.26 REMARK 500 9 THR A 8 96.02 -56.27 REMARK 500 9 LYS A 20 -175.15 -55.48 REMARK 500 9 THR A 36 43.48 -81.60 REMARK 500 9 GLU A 38 28.08 39.17 REMARK 500 9 PRO A 40 0.81 -69.73 REMARK 500 10 GLU A 10 170.20 -51.77 REMARK 500 10 LYS A 20 -174.69 -63.05 REMARK 500 11 LYS A 20 -174.36 -51.69 REMARK 500 11 SER A 44 42.04 37.17 REMARK 500 12 SER A 3 93.95 -63.46 REMARK 500 12 SER A 5 41.51 38.77 REMARK 500 12 LYS A 20 -174.97 -52.64 REMARK 500 12 SER A 41 111.97 -38.94 REMARK 500 13 LYS A 11 123.60 -34.27 REMARK 500 13 LYS A 20 -175.95 -51.13 REMARK 500 14 SER A 2 42.24 -92.02 REMARK 500 14 SER A 6 108.23 -56.01 REMARK 500 14 GLU A 10 54.64 -104.09 REMARK 500 14 LYS A 20 -174.28 -51.95 REMARK 500 14 SER A 41 111.93 -37.49 REMARK 500 15 LYS A 11 143.93 -34.91 REMARK 500 15 LYS A 20 -175.83 -67.25 REMARK 500 15 THR A 36 149.44 -38.99 REMARK 500 16 LYS A 20 178.74 -54.34 REMARK 500 16 THR A 36 97.05 -55.42 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 107.2 REMARK 620 3 HIS A 31 NE2 106.7 105.2 REMARK 620 4 HIS A 35 NE2 108.3 112.9 116.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003012948.9 RELATED DB: TARGETDB DBREF 2ELY A 8 40 UNP Q9NZL3 ZN224_HUMAN 227 259 SEQADV 2ELY GLY A 1 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 2 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 3 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY GLY A 4 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 5 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 6 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY GLY A 7 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 41 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY GLY A 42 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY PRO A 43 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 44 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY SER A 45 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELY GLY A 46 UNP Q9NZL3 EXPRESSION TAG SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO PHE SEQRES 2 A 46 LYS CYS VAL GLU CYS GLY LYS GLY PHE SER ARG ARG SER SEQRES 3 A 46 ALA LEU ASN VAL HIS HIS LYS LEU HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY HET ZN A 200 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 26 THR A 36 1 11 LINK SG CYS A 15 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 18 ZN ZN A 200 1555 1555 2.35 LINK NE2 HIS A 31 ZN ZN A 200 1555 1555 2.05 LINK NE2 HIS A 35 ZN ZN A 200 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000