PDB Short entry for 2ENT HEADER TRANSCRIPTION 28-MAR-07 2ENT TITLE SOLUTION STRUCTURE OF THE SECOND C2H2-TYPE ZINC FINGER DOMAIN FROM TITLE 2 HUMAN KRUEPPEL-LIKE FACTOR 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2, UNP RESIDUES 346-380; COMPND 5 SYNONYM: KIDNEY-ENRICHED KRUEPPEL-LIKE FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P070207-15; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC BINDING, TRANSCRIPTION FACTOR, ADIPOGENESIS, CLCNKA, CHLORIDE KEYWDS 2 CHANNEL KA, RHODOPSIN, IRBP, INTERSTITIAL RETINOL-BINDING PROTEIN, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ENT 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2ENT 1 VERSN REVDAT 1 01-APR-08 2ENT 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND C2H2-TYPE ZINC FINGER JRNL TITL 2 DOMAIN FROM HUMAN KRUEPPEL-LIKE FACTOR 15 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ENT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026887. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM UNIFORMLY 13C,15N-LABELED REMARK 210 PROTEIN; 20MM TRISHCL; 100MM REMARK 210 NACL; 1MM DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2; 1MM IDA; 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 353 150.70 -48.38 REMARK 500 2 SER A 376 49.11 -93.28 REMARK 500 3 SER A 341 115.24 -172.20 REMARK 500 3 SER A 344 41.95 -101.12 REMARK 500 4 PRO A 383 0.85 -69.75 REMARK 500 4 SER A 384 113.95 -34.58 REMARK 500 5 PHE A 351 98.96 -68.47 REMARK 500 5 SER A 384 41.63 -88.62 REMARK 500 7 PRO A 383 87.40 -69.74 REMARK 500 8 SER A 376 48.79 -89.14 REMARK 500 8 PRO A 380 99.80 -69.78 REMARK 500 9 SER A 343 96.06 -59.51 REMARK 500 9 PRO A 383 87.49 -69.73 REMARK 500 10 SER A 341 149.76 -37.83 REMARK 500 10 SER A 381 137.18 -34.60 REMARK 500 10 PRO A 383 2.60 -69.77 REMARK 500 10 SER A 384 93.63 -45.79 REMARK 500 11 SER A 343 81.99 -63.80 REMARK 500 11 PRO A 380 -171.14 -69.81 REMARK 500 11 SER A 384 42.08 37.41 REMARK 500 12 CYS A 353 153.95 -49.55 REMARK 500 12 VAL A 378 52.57 -98.06 REMARK 500 13 PRO A 380 -176.36 -69.80 REMARK 500 15 GLU A 348 146.50 -35.17 REMARK 500 15 VAL A 378 149.05 -171.47 REMARK 500 16 SER A 344 41.27 -90.69 REMARK 500 16 SER A 381 -62.01 -123.59 REMARK 500 17 PRO A 380 -174.95 -69.81 REMARK 500 18 SER A 340 121.05 -39.65 REMARK 500 18 SER A 344 40.54 -96.60 REMARK 500 18 GLU A 348 170.13 -51.72 REMARK 500 19 PHE A 351 98.28 -67.57 REMARK 500 20 THR A 346 40.64 38.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 CYS A 358 SG 105.9 REMARK 620 3 HIS A 371 NE2 112.2 113.8 REMARK 620 4 HIS A 375 NE2 112.4 109.0 103.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002021967.4 RELATED DB: TARGETDB DBREF 2ENT A 346 380 UNP Q9UIH9 KLF15_HUMAN 346 380 SEQADV 2ENT GLY A 339 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 340 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 341 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT GLY A 342 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 343 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 344 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT GLY A 345 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 381 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT GLY A 382 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT PRO A 383 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 384 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT SER A 385 UNP Q9UIH9 EXPRESSION TAG SEQADV 2ENT GLY A 386 UNP Q9UIH9 EXPRESSION TAG SEQRES 1 A 48 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO PHE SEQRES 2 A 48 ALA CYS THR TRP PRO GLY CYS GLY TRP ARG PHE SER ARG SEQRES 3 A 48 SER ASP GLU LEU SER ARG HIS ARG ARG SER HIS SER GLY SEQRES 4 A 48 VAL LYS PRO SER GLY PRO SER SER GLY HET ZN A 200 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ARG A 364 ARG A 373 1 10 SHEET 1 A 2 PHE A 351 ALA A 352 0 SHEET 2 A 2 ARG A 361 PHE A 362 -1 O PHE A 362 N PHE A 351 LINK ZN ZN A 200 SG CYS A 353 1555 1555 2.32 LINK ZN ZN A 200 SG CYS A 358 1555 1555 2.26 LINK ZN ZN A 200 NE2 HIS A 371 1555 1555 2.00 LINK ZN ZN A 200 NE2 HIS A 375 1555 1555 2.04 SITE 1 AC1 4 CYS A 353 TRP A 355 CYS A 358 TRP A 360 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000