PDB Short entry for 2EO9 HEADER CELL ADHESION 29-MAR-07 2EO9 TITLE SOLUTION STRUCTURE OF THE FIFTH IG-LIKE DOMAIN FROM HUMAN ROUNDABOUT TITLE 2 HOMO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE; COMPND 5 SYNONYM: H-ROBO-1, DELETED IN U TWENTY TWENTY; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROBO1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061002-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, IG-FOLD, H-ROBO-1, DELETED IN U TWENTY TWENTY, KEYWDS 2 NEUROGENESIS, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NAGASHIMA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EO9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EO9 1 VERSN REVDAT 1 02-OCT-07 2EO9 0 JRNL AUTH K.NAGASHIMA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH IG-LIKE DOMAIN FROM HUMAN JRNL TITL 2 ROUNDABOUT HOMO1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EO9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026903. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031112, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 23 25.96 47.31 REMARK 500 1 THR A 25 113.24 -164.87 REMARK 500 1 VAL A 49 150.59 -49.37 REMARK 500 1 THR A 74 93.77 -47.96 REMARK 500 1 PRO A 108 88.64 -69.68 REMARK 500 1 PRO A 111 2.82 -69.74 REMARK 500 1 LEU A 113 -178.80 -67.90 REMARK 500 2 VAL A 22 152.57 -46.40 REMARK 500 2 ASP A 23 27.51 45.02 REMARK 500 2 VAL A 37 130.67 -36.64 REMARK 500 2 THR A 51 47.43 -76.38 REMARK 500 2 SER A 54 -33.07 -36.44 REMARK 500 2 THR A 74 101.07 -37.59 REMARK 500 2 PRO A 84 1.74 -69.77 REMARK 500 3 SER A 3 159.10 -41.33 REMARK 500 3 ASP A 23 28.00 45.81 REMARK 500 3 THR A 25 117.40 -161.44 REMARK 500 3 THR A 51 45.55 -78.07 REMARK 500 3 ALA A 69 99.42 -60.79 REMARK 500 3 THR A 74 103.99 -48.20 REMARK 500 3 PRO A 84 2.88 -69.78 REMARK 500 3 PRO A 108 98.89 -69.77 REMARK 500 3 SER A 116 94.97 -69.88 REMARK 500 4 SER A 2 119.33 -161.95 REMARK 500 4 ASP A 23 27.44 46.20 REMARK 500 4 THR A 25 114.89 -162.76 REMARK 500 4 SER A 50 75.31 -100.95 REMARK 500 4 ASN A 61 -70.59 -39.87 REMARK 500 4 ALA A 69 98.85 -64.32 REMARK 500 4 THR A 74 91.79 -45.21 REMARK 500 4 PRO A 84 2.62 -69.82 REMARK 500 4 ARG A 107 150.42 -44.08 REMARK 500 4 ALA A 117 143.85 -172.57 REMARK 500 5 ASP A 23 25.34 40.23 REMARK 500 5 THR A 25 110.94 -161.20 REMARK 500 5 THR A 51 36.28 32.03 REMARK 500 5 LEU A 59 -74.77 -44.57 REMARK 500 5 GLU A 60 -60.26 -126.57 REMARK 500 5 ALA A 69 99.84 -63.38 REMARK 500 5 THR A 74 108.77 -39.79 REMARK 500 5 SER A 116 -179.80 -175.34 REMARK 500 6 ASP A 23 26.73 46.34 REMARK 500 6 PRO A 36 -171.82 -69.70 REMARK 500 6 LEU A 59 -70.29 -90.74 REMARK 500 6 ASN A 61 -73.90 -43.86 REMARK 500 6 ALA A 69 99.41 -67.09 REMARK 500 6 THR A 74 94.40 -41.48 REMARK 500 6 ASN A 112 52.46 -113.41 REMARK 500 6 ILE A 114 95.86 -32.33 REMARK 500 7 VAL A 22 153.02 -42.41 REMARK 500 REMARK 500 THIS ENTRY HAS 192 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001725.5 RELATED DB: TARGETDB DBREF 2EO9 A 8 118 UNP Q9Y6N7 ROBO1_HUMAN 454 564 SEQADV 2EO9 GLY A 1 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 SER A 2 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 SER A 3 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 GLY A 4 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 SER A 5 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 SER A 6 UNP Q9Y6N7 EXPRESSION TAG SEQADV 2EO9 GLY A 7 UNP Q9Y6N7 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY PRO PRO VAL ILE ARG GLN SEQRES 2 A 118 GLY PRO VAL ASN GLN THR VAL ALA VAL ASP GLY THR PHE SEQRES 3 A 118 VAL LEU SER CYS VAL ALA THR GLY SER PRO VAL PRO THR SEQRES 4 A 118 ILE LEU TRP ARG LYS ASP GLY VAL LEU VAL SER THR GLN SEQRES 5 A 118 ASP SER ARG ILE LYS GLN LEU GLU ASN GLY VAL LEU GLN SEQRES 6 A 118 ILE ARG TYR ALA LYS LEU GLY ASP THR GLY ARG TYR THR SEQRES 7 A 118 CYS ILE ALA SER THR PRO SER GLY GLU ALA THR TRP SER SEQRES 8 A 118 ALA TYR ILE GLU VAL GLN GLU PHE GLY VAL PRO VAL GLN SEQRES 9 A 118 PRO PRO ARG PRO THR ASP PRO ASN LEU ILE PRO SER ALA SEQRES 10 A 118 PRO HELIX 1 1 LYS A 70 THR A 74 5 5 SHEET 1 A 2 GLN A 18 ALA A 21 0 SHEET 2 A 2 ILE A 94 GLN A 97 1 O GLU A 95 N VAL A 20 SHEET 1 B 3 THR A 25 SER A 29 0 SHEET 2 B 3 VAL A 63 ARG A 67 -1 O LEU A 64 N LEU A 28 SHEET 3 B 3 ILE A 56 GLU A 60 -1 N LYS A 57 O GLN A 65 SHEET 1 C 3 THR A 39 LYS A 44 0 SHEET 2 C 3 TYR A 77 SER A 82 -1 O ILE A 80 N LEU A 41 SHEET 3 C 3 GLU A 87 SER A 91 -1 O ALA A 88 N ALA A 81 SSBOND 1 CYS A 30 CYS A 79 1555 1555 2.03 CISPEP 1 SER A 35 PRO A 36 1 -0.05 CISPEP 2 SER A 35 PRO A 36 2 -0.08 CISPEP 3 SER A 35 PRO A 36 3 -0.07 CISPEP 4 SER A 35 PRO A 36 4 -0.03 CISPEP 5 SER A 35 PRO A 36 5 0.01 CISPEP 6 SER A 35 PRO A 36 6 -0.08 CISPEP 7 SER A 35 PRO A 36 7 0.07 CISPEP 8 SER A 35 PRO A 36 8 -0.01 CISPEP 9 SER A 35 PRO A 36 9 0.02 CISPEP 10 SER A 35 PRO A 36 10 -0.04 CISPEP 11 SER A 35 PRO A 36 11 -0.07 CISPEP 12 SER A 35 PRO A 36 12 -0.02 CISPEP 13 SER A 35 PRO A 36 13 -0.06 CISPEP 14 SER A 35 PRO A 36 14 0.05 CISPEP 15 SER A 35 PRO A 36 15 -0.02 CISPEP 16 SER A 35 PRO A 36 16 -0.07 CISPEP 17 SER A 35 PRO A 36 17 -0.05 CISPEP 18 SER A 35 PRO A 36 18 -0.03 CISPEP 19 SER A 35 PRO A 36 19 -0.01 CISPEP 20 SER A 35 PRO A 36 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000