PDB Short entry for 2EPS HEADER TRANSCRIPTION 30-MAR-07 2EPS TITLE SOLUTION STRUCTURE OF THE 4TH ZINC FINGER DOMAIN OF ZINC FINGER TITLE 2 PROTEIN 278 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POZ-, AT HOOK-, AND ZINC FINGER-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN, UNP RESIDUES 408-448; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 278, ZINC FINGER SARCOMA GENE PROTEIN, COMPND 6 BTB-POZ DOMAIN ZINC FINGER TRANSCRIPTION FACTOR, PROTEIN KINASE A RI- COMPND 7 SUBUNIT ALPHA- ASSOCIATED PROTEIN, ZINC FINGER AND BTB DOMAIN- COMPND 8 CONTAINING PROTEIN 19; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PATZ1, PATZ, RIAZ, ZBTB19, ZNF278, ZSG; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061204-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS C2H2, ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EPS 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EPS 1 VERSN REVDAT 1 02-OCT-07 2EPS 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 4TH ZINC FINGER DOMAIN OF ZINC JRNL TITL 2 FINGER PROTEIN 278 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EPS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026957. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 0.05MM REMARK 210 ZNCL2+1MM IDA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 413 94.01 -59.04 REMARK 500 1 LYS A 420 179.48 -50.99 REMARK 500 1 LYS A 443 174.57 -57.06 REMARK 500 1 CYS A 444 42.37 -80.94 REMARK 500 2 SER A 405 -46.53 -133.38 REMARK 500 2 TYR A 413 93.40 -61.44 REMARK 500 2 LYS A 420 179.95 -58.19 REMARK 500 2 PRO A 441 98.27 -69.78 REMARK 500 3 TYR A 413 95.30 -62.46 REMARK 500 3 LYS A 420 174.72 -54.24 REMARK 500 3 SER A 438 99.59 -47.88 REMARK 500 3 VAL A 448 109.07 -34.37 REMARK 500 3 SER A 452 41.67 -82.73 REMARK 500 4 SER A 402 161.00 -45.10 REMARK 500 4 TYR A 413 94.13 -60.38 REMARK 500 4 LYS A 420 178.08 -58.25 REMARK 500 4 PRO A 441 -169.35 -69.69 REMARK 500 5 TYR A 413 94.80 -62.76 REMARK 500 5 SER A 417 -66.41 -122.98 REMARK 500 5 LYS A 420 -179.48 -65.37 REMARK 500 5 PRO A 441 -171.89 -69.82 REMARK 500 5 CYS A 444 162.10 -43.34 REMARK 500 5 TRP A 447 116.96 -166.50 REMARK 500 5 VAL A 448 40.73 33.56 REMARK 500 5 SER A 453 48.26 -81.36 REMARK 500 6 SER A 405 108.92 -166.82 REMARK 500 6 TYR A 413 97.18 -63.31 REMARK 500 6 LYS A 420 -179.40 -64.63 REMARK 500 6 PRO A 441 -176.69 -69.72 REMARK 500 6 HIS A 442 102.36 -57.97 REMARK 500 7 VAL A 409 27.50 37.98 REMARK 500 7 TYR A 413 93.98 -61.25 REMARK 500 7 LYS A 420 -179.67 -55.48 REMARK 500 7 HIS A 442 147.65 -35.17 REMARK 500 7 CYS A 444 96.71 -58.78 REMARK 500 7 GLN A 445 108.66 -54.60 REMARK 500 8 SER A 403 42.50 -89.75 REMARK 500 8 SER A 408 42.66 -97.25 REMARK 500 8 TYR A 413 89.87 -60.74 REMARK 500 8 LYS A 420 176.24 -55.97 REMARK 500 8 THR A 437 88.63 -67.53 REMARK 500 8 PRO A 441 84.21 -69.77 REMARK 500 8 SER A 449 174.21 -52.50 REMARK 500 8 PRO A 451 2.91 -69.78 REMARK 500 8 SER A 452 159.36 -39.48 REMARK 500 9 SER A 402 42.19 -91.82 REMARK 500 9 TYR A 413 95.49 -60.21 REMARK 500 9 LYS A 420 -179.52 -62.81 REMARK 500 9 SER A 438 148.89 -34.55 REMARK 500 10 VAL A 409 141.01 -173.48 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 415 SG REMARK 620 2 CYS A 418 SG 117.3 REMARK 620 3 HIS A 431 NE2 108.5 106.7 REMARK 620 4 HIS A 436 NE2 109.6 107.3 107.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002013231.4 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS DIFFERENCE IS BASED ON REFERENCE 4 IN THE REMARK 999 DATABASE, Q9HBE1. DBREF 2EPS A 408 445 UNP Q9HBE1 PATZ1_HUMAN 408 445 SEQADV 2EPS GLY A 401 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 402 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 403 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS GLY A 404 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 405 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 406 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS GLY A 407 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS VAL A 446 UNP Q9HBE1 SEE REMARK 999 SEQADV 2EPS TRP A 447 UNP Q9HBE1 SEE REMARK 999 SEQADV 2EPS VAL A 448 UNP Q9HBE1 SEE REMARK 999 SEQADV 2EPS SER A 449 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS GLY A 450 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS PRO A 451 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 452 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS SER A 453 UNP Q9HBE1 EXPRESSION TAG SEQADV 2EPS GLY A 454 UNP Q9HBE1 EXPRESSION TAG SEQRES 1 A 54 GLY SER SER GLY SER SER GLY SER VAL GLY LYS PRO TYR SEQRES 2 A 54 ILE CYS GLN SER CYS GLY LYS GLY PHE SER ARG PRO ASP SEQRES 3 A 54 HIS LEU ASN GLY HIS ILE LYS GLN VAL HIS THR SER GLU SEQRES 4 A 54 ARG PRO HIS LYS CYS GLN VAL TRP VAL SER GLY PRO SER SEQRES 5 A 54 SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ARG A 424 VAL A 435 1 12 SHEET 1 A 2 TYR A 413 ILE A 414 0 SHEET 2 A 2 GLY A 421 PHE A 422 -1 O PHE A 422 N TYR A 413 LINK ZN ZN A 201 SG CYS A 415 1555 1555 2.36 LINK ZN ZN A 201 SG CYS A 418 1555 1555 2.23 LINK ZN ZN A 201 NE2 HIS A 431 1555 1555 2.01 LINK ZN ZN A 201 NE2 HIS A 436 1555 1555 1.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000