PDB Short entry for 2EQW HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-MAR-07 2EQW TITLE SOLUTION STRUCTURE OF THE 6TH C2H2 TYPE ZINC FINGER DOMAIN OF ZINC TITLE 2 FINGER PROTEIN 484 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 484; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF484; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-39; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS C2H2, ZINC FINGER DOMAIN, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 4 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.IMAI,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EQW 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EQW 1 VERSN REVDAT 1 02-OCT-07 2EQW 0 JRNL AUTH M.IMAI,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 6TH C2H2 TYPE ZINC FINGER DOMAIN JRNL TITL 2 OF ZINC FINGER PROTEIN 484 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EQW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026996. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL (PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O ; REMARK 210 0.05MM ZNCL2, 1MM IDA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 411 -166.30 -69.81 REMARK 500 1 TYR A 412 105.69 -50.23 REMARK 500 1 THR A 415 31.46 -96.54 REMARK 500 1 LYS A 424 40.33 -107.64 REMARK 500 1 SER A 425 -54.25 -133.55 REMARK 500 1 THR A 435 103.33 -55.87 REMARK 500 1 SER A 438 120.28 -173.01 REMARK 500 2 PRO A 411 -166.30 -69.73 REMARK 500 2 TYR A 412 107.83 -50.22 REMARK 500 2 THR A 415 37.10 -95.96 REMARK 500 2 LYS A 424 42.14 -96.03 REMARK 500 2 SER A 425 -44.76 -131.77 REMARK 500 2 SER A 438 52.55 -115.33 REMARK 500 3 PRO A 411 -166.33 -69.71 REMARK 500 3 TYR A 412 106.65 -50.19 REMARK 500 3 GLU A 416 -45.74 -130.20 REMARK 500 3 SER A 425 -50.08 -125.06 REMARK 500 3 GLU A 437 110.14 -169.40 REMARK 500 3 SER A 438 69.87 -101.48 REMARK 500 3 SER A 442 74.85 -110.03 REMARK 500 4 PRO A 411 -166.33 -69.81 REMARK 500 4 TYR A 412 106.61 -50.25 REMARK 500 4 THR A 415 31.78 -95.52 REMARK 500 4 GLU A 416 -43.55 -133.43 REMARK 500 4 SER A 438 -67.12 -95.66 REMARK 500 5 SER A 403 49.69 -106.94 REMARK 500 5 PRO A 411 -166.27 -69.82 REMARK 500 5 TYR A 412 106.23 -50.30 REMARK 500 5 GLU A 437 55.85 -113.98 REMARK 500 5 SER A 442 47.63 -100.45 REMARK 500 6 PRO A 411 -166.27 -69.71 REMARK 500 6 TYR A 412 106.60 -50.25 REMARK 500 6 SER A 425 -61.48 -123.93 REMARK 500 6 SER A 441 99.67 -65.78 REMARK 500 7 PRO A 411 -166.32 -69.79 REMARK 500 7 THR A 435 40.29 -104.52 REMARK 500 7 SER A 438 44.12 -93.79 REMARK 500 8 SER A 407 33.16 -96.41 REMARK 500 8 PRO A 411 -166.32 -69.78 REMARK 500 8 TYR A 412 106.16 -50.23 REMARK 500 8 SER A 442 -62.19 -125.81 REMARK 500 9 PRO A 411 -166.30 -69.76 REMARK 500 9 TYR A 412 105.44 -50.20 REMARK 500 9 THR A 435 44.69 -91.80 REMARK 500 9 SER A 442 -58.34 -121.56 REMARK 500 10 PRO A 411 -166.29 -69.80 REMARK 500 10 TYR A 412 104.51 -50.25 REMARK 500 10 SER A 425 -40.74 -131.69 REMARK 500 11 GLU A 409 69.29 -118.26 REMARK 500 11 PRO A 411 -166.33 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 414 SG REMARK 620 2 CYS A 417 SG 113.8 REMARK 620 3 HIS A 430 NE2 111.9 110.0 REMARK 620 4 HIS A 434 NE2 105.9 118.5 95.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006001.11 RELATED DB: TARGETDB DBREF 2EQW A 409 437 UNP Q5JVG2 ZN484_HUMAN 409 437 SEQADV 2EQW GLY A 402 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 403 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 404 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW GLY A 405 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 406 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 407 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW GLY A 408 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 438 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW GLY A 439 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW PRO A 440 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 441 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW SER A 442 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EQW GLY A 443 UNP Q5JVG2 EXPRESSION TAG SEQRES 1 A 42 GLY SER SER GLY SER SER GLY GLU LYS PRO TYR VAL CYS SEQRES 2 A 42 THR GLU CYS GLY LYS ALA PHE ILE ARG LYS SER HIS PHE SEQRES 3 A 42 ILE THR HIS GLU ARG ILE HIS THR GLY GLU SER GLY PRO SEQRES 4 A 42 SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 425 THR A 435 1 11 SHEET 1 A 2 TYR A 412 VAL A 413 0 SHEET 2 A 2 ALA A 420 PHE A 421 -1 O PHE A 421 N TYR A 412 LINK ZN ZN A 201 SG CYS A 414 1555 1555 2.23 LINK ZN ZN A 201 SG CYS A 417 1555 1555 2.19 LINK ZN ZN A 201 NE2 HIS A 430 1555 1555 1.95 LINK ZN ZN A 201 NE2 HIS A 434 1555 1555 2.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000