PDB Short entry for 2EYC HEADER PLANT PROTEIN 09-NOV-05 2EYC TITLE DMSO REFINED SOLUTION STRUCTURE OF CRAMBIN IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAMBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; SOURCE 3 ORGANISM_TAXID: 3721; SOURCE 4 STRAIN: SUBSP. ABYSSINICA; SOURCE 5 GENE: THI2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A-SN_CRAMBIN KEYWDS CRAMBIN, DPC, MICELLES, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.C.AHN,J.L.MARKLEY REVDAT 3 09-MAR-22 2EYC 1 REMARK REVDAT 2 24-FEB-09 2EYC 1 VERSN REVDAT 1 23-MAY-06 2EYC 0 JRNL AUTH H.C.AHN,N.JURANIC,S.MACURA,J.L.MARKLEY JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE WATER-INSOLUBLE PROTEIN JRNL TITL 2 CRAMBIN IN DODECYLPHOSPHOCHOLINE MICELLES AND ITS MINIMAL JRNL TITL 3 SOLVENT-EXPOSED SURFACE. JRNL REF J.AM.CHEM.SOC. V. 128 4398 2006 JRNL REFN ISSN 0002-7863 JRNL PMID 16569017 JRNL DOI 10.1021/JA057773D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EYC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035243. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM CRAMBIN U-15N,13C, PH REMARK 210 6.0, 20 MM PHOSPHATE BUFFER, REMARK 210 300MM DPC, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_ 15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.9.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : DMSO REFINED STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 40.64 -103.00 REMARK 500 1 ALA A 38 80.37 62.52 REMARK 500 1 THR A 39 96.63 -63.63 REMARK 500 2 PRO A 5 34.21 -86.05 REMARK 500 2 GLU A 23 -34.94 -39.83 REMARK 500 2 ALA A 38 15.90 -157.45 REMARK 500 3 SER A 6 132.50 -174.03 REMARK 500 3 ALA A 38 12.93 -152.65 REMARK 500 4 SER A 6 149.38 -171.01 REMARK 500 4 ALA A 38 21.86 -141.74 REMARK 500 5 PRO A 36 30.99 -87.75 REMARK 500 5 ALA A 38 30.17 -81.29 REMARK 500 5 THR A 39 48.66 -80.38 REMARK 500 5 ALA A 45 33.46 -89.01 REMARK 500 6 PRO A 5 45.40 -84.61 REMARK 500 6 ALA A 38 102.00 165.20 REMARK 500 6 THR A 39 94.39 -53.41 REMARK 500 7 PRO A 36 28.91 -78.56 REMARK 500 7 ALA A 38 22.38 -148.39 REMARK 500 7 THR A 39 -46.48 -133.00 REMARK 500 7 CYS A 40 164.92 48.92 REMARK 500 7 ALA A 45 35.50 -91.06 REMARK 500 8 PRO A 19 35.46 -78.05 REMARK 500 9 PRO A 36 39.85 -83.53 REMARK 500 9 ALA A 45 34.31 -84.43 REMARK 500 10 SER A 6 145.13 -176.09 REMARK 500 11 PRO A 36 38.48 -78.10 REMARK 500 11 ALA A 38 13.68 -150.62 REMARK 500 11 ALA A 45 37.76 -94.96 REMARK 500 12 PRO A 19 0.50 -69.90 REMARK 500 14 PRO A 5 35.89 -86.98 REMARK 500 14 ALA A 45 52.32 -116.53 REMARK 500 15 PRO A 5 43.94 -92.35 REMARK 500 15 SER A 6 135.17 -173.02 REMARK 500 15 ARG A 17 -39.87 -134.27 REMARK 500 15 PRO A 19 39.29 -88.50 REMARK 500 15 ALA A 38 -87.46 -165.55 REMARK 500 15 THR A 39 -15.17 -140.91 REMARK 500 15 CYS A 40 139.50 64.91 REMARK 500 16 PRO A 5 30.83 -94.91 REMARK 500 16 SER A 6 139.55 -179.04 REMARK 500 16 ALA A 38 12.95 -146.66 REMARK 500 17 THR A 39 26.21 -151.03 REMARK 500 18 THR A 39 -99.48 42.28 REMARK 500 20 SER A 6 132.87 172.21 REMARK 500 20 GLU A 23 -39.56 -35.84 REMARK 500 20 ALA A 38 -29.04 71.69 REMARK 500 20 CYS A 40 137.46 65.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6455 RELATED DB: BMRB REMARK 900 RELATED ID: 1YV8 RELATED DB: PDB REMARK 900 RELATED ID: 1YVA RELATED DB: PDB REMARK 900 RELATED ID: 2EYA RELATED DB: PDB REMARK 900 RELATED ID: 2EYB RELATED DB: PDB REMARK 900 RELATED ID: 2EYD RELATED DB: PDB DBREF 2EYC A 1 46 UNP P01542 CRAM_CRAAB 1 46 SEQRES 1 A 46 THR THR CYS CYS PRO SER ILE VAL ALA ARG SER ASN PHE SEQRES 2 A 46 ASN VAL CYS ARG LEU PRO GLY THR PRO GLU ALA LEU CYS SEQRES 3 A 46 ALA THR TYR THR GLY CYS ILE ILE ILE PRO GLY ALA THR SEQRES 4 A 46 CYS PRO GLY ASP TYR ALA ASN HELIX 1 1 SER A 6 LEU A 18 1 13 HELIX 2 2 PRO A 22 GLY A 31 1 10 SHEET 1 A 3 ILE A 33 ILE A 34 0 SHEET 2 A 3 THR A 2 PRO A 5 -1 N CYS A 3 O ILE A 33 SHEET 3 A 3 ALA A 45 ASN A 46 1 O ASN A 46 N CYS A 4 SSBOND 1 CYS A 3 CYS A 40 1555 1555 2.03 SSBOND 2 CYS A 4 CYS A 32 1555 1555 2.03 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000