PDB Short entry for 2F76 HEADER VIRAL PROTEIN 30-NOV-05 2F76 TITLE SOLUTION STRUCTURE OF THE M-PMV WILD TYPE MATRIX PROTEIN (P10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE PROTEIN P10; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 1-100 OF GAG POLYPROTEIN; COMPND 5 SYNONYM: M-PMV MATRIX PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: A PART OF CORE POLYPROTEIN WHICH CONTAINS: CORE COMPND 8 PROTEIN P10; CORE PHOSPHOPROTEIN PP18; CORE PROTEIN P12; CORE PROTEIN COMPND 9 P27; CORE PROTEIN P14; CORE PROTEIN P4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN RETROVIRUS 1; SOURCE 3 ORGANISM_TAXID: 11942; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS 4 ALPHA-HELICES, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.VLACH,J.LIPOV,V.VEVERKA,J.LANG,P.SRB,M.RUMLOVA,E.HUNTER,T.RUML, AUTHOR 2 R.HRABAL REVDAT 5 09-MAR-22 2F76 1 REMARK SEQADV REVDAT 4 11-AUG-10 2F76 1 JRNL REVDAT 3 24-FEB-09 2F76 1 VERSN REVDAT 2 12-DEC-06 2F76 1 HEADER REVDAT 1 05-DEC-06 2F76 0 JRNL AUTH J.VLACH,J.LIPOV,M.RUMLOVA,V.VEVERKA,J.LANG,P.SRB,Z.KNEJZLIK, JRNL AUTH 2 I.PICHOVA,E.HUNTER,R.HRABAL,T.RUML JRNL TITL D-RETROVIRUS MORPHOGENETIC SWITCH DRIVEN BY THE TARGETING JRNL TITL 2 SIGNAL ACCESSIBILITY TO TCTEX-1 OF DYNEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 10565 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18647839 JRNL DOI 10.1073/PNAS.0801765105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, XPLOR-NIH 2.11 REMARK 3 AUTHORS : BRUKER (XWINNMR), C.D. SCHWIETERS, J.J. REMARK 3 KUSZEWSKI,N. TJANDRA AND G.M. CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F76 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 800 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM MATRIX PROTEIN U-13C, U REMARK 210 -15N; 100 MM PHOSPHATE BUFFER (K) REMARK 210 ; 200 MM NACL; 10 MM DTT; 95% REMARK 210 H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3 REV 2004.184.22.03, REMARK 210 SPARKY 3.110 REMARK 210 METHOD USED : SIMULATED ANNEALING; MOLECULAR REMARK 210 DYNAMICS; TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN X 64 O VAL X 75 1.43 REMARK 500 O ARG X 57 H ASP X 61 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE X 51 107.56 -36.70 REMARK 500 1 PRO X 72 99.28 -49.18 REMARK 500 1 THR X 78 -15.62 -49.07 REMARK 500 1 GLU X 94 -3.38 -57.87 REMARK 500 1 ASN X 96 73.02 60.92 REMARK 500 2 GLU X 4 90.37 -63.04 REMARK 500 2 LYS X 25 74.71 -119.92 REMARK 500 2 CYS X 42 84.85 -162.17 REMARK 500 2 PHE X 45 43.66 -163.50 REMARK 500 2 PRO X 46 148.62 -36.14 REMARK 500 2 ILE X 51 108.23 -52.23 REMARK 500 2 PRO X 72 100.18 -43.66 REMARK 500 2 LYS X 74 -36.71 -33.34 REMARK 500 2 THR X 78 -12.30 -48.44 REMARK 500 3 LYS X 25 74.62 -107.27 REMARK 500 3 PHE X 45 -43.80 173.47 REMARK 500 3 ILE X 51 126.60 -35.42 REMARK 500 3 PRO X 72 95.06 -40.44 REMARK 500 3 THR X 78 -13.18 -45.84 REMARK 500 3 ASN X 96 78.47 61.21 REMARK 500 3 GLN X 98 -87.31 52.08 REMARK 500 4 ILE X 51 110.38 -37.08 REMARK 500 4 PRO X 72 97.05 -47.99 REMARK 500 4 LYS X 74 -38.46 -31.00 REMARK 500 4 LYS X 92 86.94 44.30 REMARK 500 5 CYS X 42 110.49 -162.87 REMARK 500 5 PHE X 45 -54.01 160.45 REMARK 500 5 GLN X 47 -153.19 -142.73 REMARK 500 5 ILE X 51 109.87 -36.18 REMARK 500 5 PRO X 72 95.55 -42.52 REMARK 500 5 THR X 78 -17.98 -43.59 REMARK 500 5 ASN X 96 -52.09 171.85 REMARK 500 6 LEU X 5 -105.24 -78.50 REMARK 500 6 TRP X 44 -170.72 -66.22 REMARK 500 6 PHE X 45 -45.18 -179.87 REMARK 500 6 ILE X 51 113.31 -34.29 REMARK 500 6 PRO X 72 108.71 -51.13 REMARK 500 6 LYS X 74 -39.75 -38.15 REMARK 500 6 THR X 78 -14.32 -45.28 REMARK 500 6 GLU X 94 -17.26 -44.18 REMARK 500 7 CYS X 42 98.29 -164.59 REMARK 500 7 PHE X 45 -41.57 164.70 REMARK 500 7 ILE X 51 107.65 -36.68 REMARK 500 7 PRO X 72 99.52 -34.40 REMARK 500 7 LYS X 74 -38.84 -38.23 REMARK 500 7 THR X 78 -18.68 -44.02 REMARK 500 7 GLU X 94 4.25 -69.63 REMARK 500 7 ASN X 96 71.90 58.33 REMARK 500 8 LEU X 5 -70.25 -103.21 REMARK 500 8 CYS X 42 64.79 37.02 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6400 RELATED DB: BMRB REMARK 900 ASSIGNMENT OF BACKBONE AND SIDE CHAIN CHEMICAL SHIFTS REMARK 900 RELATED ID: 2F77 RELATED DB: PDB DBREF 2F76 X 2 100 UNP P04022 GAG_SRV1 1 99 SEQADV 2F76 MET X 1 UNP P04022 INSERTION SEQRES 1 X 100 MET GLY GLN GLU LEU SER GLN HIS GLU ARG TYR VAL GLU SEQRES 2 X 100 GLN LEU LYS GLN ALA LEU LYS THR ARG GLY VAL LYS VAL SEQRES 3 X 100 LYS TYR ALA ASP LEU LEU LYS PHE PHE ASP PHE VAL LYS SEQRES 4 X 100 ASP THR CYS PRO TRP PHE PRO GLN GLU GLY THR ILE ASP SEQRES 5 X 100 ILE LYS ARG TRP ARG ARG VAL GLY ASP CYS PHE GLN ASP SEQRES 6 X 100 TYR TYR ASN THR PHE GLY PRO GLU LYS VAL PRO VAL THR SEQRES 7 X 100 ALA PHE SER TYR TRP ASN LEU ILE LYS GLU LEU ILE ASP SEQRES 8 X 100 LYS LYS GLU VAL ASN PRO GLN VAL MET HELIX 1 1 SER X 6 THR X 21 1 16 HELIX 2 2 LYS X 27 CYS X 42 1 16 HELIX 3 3 ILE X 51 GLY X 71 1 21 HELIX 4 4 VAL X 77 GLU X 94 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000