PDB Short entry for 2F89 HEADER TRANSFERASE 02-DEC-05 2F89 TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH PAMIDRONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: RESIDUES 6-353; COMPND 5 SYNONYM: FPP SYNTHETASE; FPS; FARNESYL PYROPHOSPHATE SYNTHETASE; COMPND 6 EC: 2.5.1.1, 2.5.1.10; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: INCLUDES: DIMETHYLALLYLTRANSTRANSFERASE; COMPND 9 GERANYLTRANSTRANSFERASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 TUNER(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MEVALONATE PATHWAY; ISOPRENE BIOSYNTHESIS; CHOLESTEROL BIOSYNTHESIS; KEYWDS 2 BISPHOSPHONATE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-M.RONDEAU,F.BITSCH,E.BOURGIER,M.GEISER,R.HEMMIG,M.KROEMER, AUTHOR 2 S.LEHMANN,P.RAMAGE,S.RIEFFEL,A.STRAUSS,J.R.GREEN,W.JAHNKE REVDAT 5 14-FEB-24 2F89 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2F89 1 REMARK REVDAT 3 13-JUL-11 2F89 1 VERSN REVDAT 2 24-FEB-09 2F89 1 VERSN REVDAT 1 28-FEB-06 2F89 0 JRNL AUTH J.M.RONDEAU,F.BITSCH,E.BOURGIER,M.GEISER,R.HEMMIG,M.KROEMER, JRNL AUTH 2 S.LEHMANN,P.RAMAGE,S.RIEFFEL,A.STRAUSS,J.R.GREEN,W.JAHNKE JRNL TITL STRUCTURAL BASIS FOR THE EXCEPTIONAL IN VIVO EFFICACY OF JRNL TITL 2 BISPHOSPHONATE DRUGS. JRNL REF CHEMMEDCHEM V. 1 267 2006 JRNL REFN ISSN 1860-7179 JRNL PMID 16892359 JRNL DOI 10.1002/CMDC.200500059 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2002 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 17969152.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2060 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1990 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1371 REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 13389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1958 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 214 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.06000 REMARK 3 B22 (A**2) : -20.06000 REMARK 3 B33 (A**2) : 40.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.060 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.330 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.270 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.790 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 58.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : WATER.TOP REMARK 3 PARAMETER FILE 4 : ION.TOP REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : AREDIA.PRM REMARK 3 TOPOLOGY FILE 3 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX 2002 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NA,K PHOSPHATE, 25% GLYCEROL, PH REMARK 280 5.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.24100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.78450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.78450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.62050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.78450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.78450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.86150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.78450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.78450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.62050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.78450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.78450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.86150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.24100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 111.56900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 111.56900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.24100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY F 4 REMARK 465 PRO F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 77 62.69 -116.38 REMARK 500 VAL F 124 -71.09 -103.86 REMARK 500 ASP F 184 78.96 -150.82 REMARK 500 PHE F 206 -52.32 -138.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F5001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD1 REMARK 620 2 ASP F 107 OD2 74.2 REMARK 620 3 210 F9001 O2 89.6 162.9 REMARK 620 4 210 F9001 O9 81.1 80.6 91.9 REMARK 620 5 HOH F9005 O 86.9 89.5 94.9 166.1 REMARK 620 6 HOH F9028 O 162.9 90.0 106.7 103.1 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F5003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD2 REMARK 620 2 ASP F 107 OD2 72.9 REMARK 620 3 210 F9001 O9 105.6 90.5 REMARK 620 4 HOH F9009 O 83.8 88.2 169.6 REMARK 620 5 HOH F9012 O 95.3 163.7 103.7 79.3 REMARK 620 6 HOH F9033 O 159.3 105.7 95.1 75.4 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F5002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 243 OD2 REMARK 620 2 210 F9001 O3 93.5 REMARK 620 3 210 F9001 O10 106.7 96.9 REMARK 620 4 HOH F9003 O 89.1 172.3 89.3 REMARK 620 5 HOH F9004 O 172.3 89.7 79.8 86.9 REMARK 620 6 HOH F9034 O 84.4 72.6 165.4 100.5 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 5003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 210 F 9001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F7M RELATED DB: PDB REMARK 900 HUMAN FPPS, UNLIGANDED REMARK 900 RELATED ID: 2F8C RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH ZOLEDRONATE AND MG2+ REMARK 900 RELATED ID: 2F8Z RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH ZOLEDRONATE, MG2+ AND ISOPENTENYL REMARK 900 DIPHOSPHATE REMARK 900 RELATED ID: 2F92 RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH ALENDRONATE AND ZN2+ REMARK 900 RELATED ID: 2F94 RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH IBANDRONATE AND ZN2+ REMARK 900 RELATED ID: 2F9K RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH ZOLEDRONATE AND ZN2+ DBREF 2F89 F 6 353 UNP P14324 FPPS_HUMAN 6 353 SEQADV 2F89 GLY F 4 UNP P14324 CLONING ARTIFACT SEQADV 2F89 PRO F 5 UNP P14324 CLONING ARTIFACT SEQRES 1 F 350 GLY PRO ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP SEQRES 2 F 350 PHE VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR SEQRES 3 F 350 GLU ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE SEQRES 4 F 350 ALA ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY SEQRES 5 F 350 GLY LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE SEQRES 6 F 350 ARG GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER SEQRES 7 F 350 LEU GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU SEQRES 8 F 350 LEU GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SEQRES 9 F 350 SER SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN SEQRES 10 F 350 LYS PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN SEQRES 11 F 350 LEU LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR SEQRES 12 F 350 CYS ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU SEQRES 13 F 350 PHE LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR SEQRES 14 F 350 LEU ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU SEQRES 15 F 350 VAL ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS SEQRES 16 F 350 TYR LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA SEQRES 17 F 350 ALA ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU SEQRES 18 F 350 HIS ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU SEQRES 19 F 350 PHE PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY SEQRES 20 F 350 ASP PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN SEQRES 21 F 350 ASP ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN SEQRES 22 F 350 ARG ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN SEQRES 23 F 350 TYR GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS SEQRES 24 F 350 ALA LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU SEQRES 25 F 350 GLN TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU SEQRES 26 F 350 ILE GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE SEQRES 27 F 350 LEU GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET PO4 F1001 5 HET MN F5001 1 HET MN F5002 1 HET MN F5003 1 HET 210 F9001 13 HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION HETNAM 210 PAMIDRONATE HETSYN 210 (3-AMINO-1-HYDROXY-1-PHOSPHONO-PROPYL)PHOSPHONIC ACID FORMUL 2 PO4 O4 P 3- FORMUL 3 MN 3(MN 2+) FORMUL 6 210 C3 H11 N O7 P2 FORMUL 7 HOH *55(H2 O) HELIX 1 1 ASP F 8 HIS F 20 1 13 HELIX 2 2 HIS F 20 THR F 29 1 10 HELIX 3 3 HIS F 35 GLU F 37 5 3 HELIX 4 4 ILE F 38 ALA F 53 1 16 HELIX 5 5 TYR F 58 GLU F 70 1 13 HELIX 6 6 GLU F 73 GLN F 77 5 5 HELIX 7 7 ASP F 78 SER F 108 1 31 HELIX 8 8 TRP F 118 LYS F 121 5 4 HELIX 9 9 VAL F 124 LEU F 126 5 3 HELIX 10 10 ASP F 127 ARG F 148 1 22 HELIX 11 11 TYR F 152 THR F 177 1 26 HELIX 12 12 ASP F 184 PHE F 188 5 5 HELIX 13 13 THR F 189 THR F 201 1 13 HELIX 14 14 THR F 201 PHE F 206 1 6 HELIX 15 15 PHE F 206 ALA F 217 1 12 HELIX 16 16 GLY F 221 GLY F 250 1 30 HELIX 17 17 ASP F 251 GLY F 256 1 6 HELIX 18 18 SER F 268 ALA F 278 1 11 HELIX 19 19 THR F 279 TYR F 290 1 12 HELIX 20 20 GLU F 294 LEU F 308 1 15 HELIX 21 21 ASP F 309 ALA F 333 1 25 HELIX 22 22 PRO F 337 TYR F 349 1 13 SHEET 1 A 2 THR F 111 ARG F 112 0 SHEET 2 A 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 LINK OD1 ASP F 103 MN MN F5001 1555 1555 2.29 LINK OD2 ASP F 103 MN MN F5003 1555 1555 2.43 LINK OD2 ASP F 107 MN MN F5001 1555 1555 2.20 LINK OD2 ASP F 107 MN MN F5003 1555 1555 2.40 LINK OD2 ASP F 243 MN MN F5002 1555 1555 2.25 LINK MN MN F5001 O2 210 F9001 1555 1555 2.17 LINK MN MN F5001 O9 210 F9001 1555 1555 2.59 LINK MN MN F5001 O HOH F9005 1555 1555 2.13 LINK MN MN F5001 O HOH F9028 1555 1555 2.42 LINK MN MN F5002 O3 210 F9001 1555 1555 2.32 LINK MN MN F5002 O10 210 F9001 1555 1555 1.94 LINK MN MN F5002 O HOH F9003 1555 1555 2.59 LINK MN MN F5002 O HOH F9004 1555 1555 2.01 LINK MN MN F5002 O HOH F9034 1555 1555 2.01 LINK MN MN F5003 O9 210 F9001 1555 1555 1.95 LINK MN MN F5003 O HOH F9009 1555 1555 1.85 LINK MN MN F5003 O HOH F9012 1555 1555 2.16 LINK MN MN F5003 O HOH F9033 1555 1555 2.54 CISPEP 1 ALA F 334 PRO F 335 0 -0.94 SITE 1 AC1 9 GLY F 56 LYS F 57 ARG F 60 GLN F 96 SITE 2 AC1 9 ARG F 113 HOH F9015 HOH F9030 HOH F9044 SITE 3 AC1 9 HOH F9056 SITE 1 AC2 6 ASP F 103 ASP F 107 MN F5003 210 F9001 SITE 2 AC2 6 HOH F9005 HOH F9028 SITE 1 AC3 5 ASP F 243 210 F9001 HOH F9003 HOH F9004 SITE 2 AC3 5 HOH F9034 SITE 1 AC4 7 ASP F 103 ASP F 107 MN F5001 210 F9001 SITE 2 AC4 7 HOH F9009 HOH F9012 HOH F9033 SITE 1 AC5 15 ASP F 103 ASP F 107 ARG F 112 LYS F 200 SITE 2 AC5 15 TYR F 204 GLN F 240 ASP F 243 LYS F 257 SITE 3 AC5 15 MN F5001 MN F5002 MN F5003 HOH F9004 SITE 4 AC5 15 HOH F9025 HOH F9034 HOH F9039 CRYST1 111.569 111.569 66.482 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008963 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015042 0.00000