PDB Short entry for 2FGQ HEADER MEMBRANE PROTEIN 22-DEC-05 2FGQ TITLE HIGH RESOLUTION X-RAY STRUCTURE OF OMP32 IN COMPLEX WITH MALATE CAVEAT 2FGQ MLT X 700 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PORIN PROTEIN 32; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: OMP32 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DELFTIA ACIDOVORANS; SOURCE 3 ORGANISM_TAXID: 80866 KEYWDS PORIN, MALATE, OUTER MEMBRANE PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,H.ENGELHARDT REVDAT 6 14-FEB-24 2FGQ 1 HETSYN REVDAT 5 29-JUL-20 2FGQ 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUL-11 2FGQ 1 VERSN REVDAT 3 24-FEB-09 2FGQ 1 VERSN REVDAT 2 28-MAR-06 2FGQ 1 JRNL REVDAT 1 31-JAN-06 2FGQ 0 JRNL AUTH U.ZACHARIAE,T.KLUHSPIES,S.DE,H.ENGELHARDT,K.ZETH JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES AND MOLECULAR DYNAMICS JRNL TITL 2 STUDIES REVEAL SUBSTRATE BINDING IN THE PORIN OMP32 JRNL REF J.BIOL.CHEM. V. 281 7413 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16434398 JRNL DOI 10.1074/JBC.M510939200 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 103506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5173 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2527 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2234 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3407 ; 1.772 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5185 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2917 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 545 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 432 ; 0.280 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2722 ; 0.282 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1695 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.282 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 1.656 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2511 ; 2.573 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 926 ; 4.149 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 896 ; 6.034 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0053 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103506 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 20K, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.60500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.60500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMERIC AND GENERATED BY THE THREEFOLD AXIS OF SPACE GROUP REMARK 300 P63 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 106.21000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 53.10500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 91.98056 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1' BOG X1170 LIES ON A SPECIAL POSITION. REMARK 375 CA CA X 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN X 1 REMARK 465 SER X 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY X 70 O HOH X 1413 1.57 REMARK 500 C GLY X 70 O HOH X 1413 1.60 REMARK 500 CB SER X 139 O HOH X 1443 1.70 REMARK 500 SD MET X 116 O HOH X 1339 1.87 REMARK 500 O HOH X 1432 O HOH X 1522 1.95 REMARK 500 O HOH X 1236 O HOH X 1279 1.96 REMARK 500 CG MET X 116 O HOH X 1339 1.98 REMARK 500 O HOH X 1420 O HOH X 1429 2.00 REMARK 500 O HOH X 1273 O HOH X 1478 2.05 REMARK 500 CD1 LEU X 222 O HOH X 1444 2.09 REMARK 500 O HOH X 1446 O HOH X 1450 2.11 REMARK 500 N PHE X 71 O HOH X 1413 2.16 REMARK 500 N SER X 3 O HOH X 1402 2.18 REMARK 500 OE1 GLN X 273 O HOH X 1276 2.18 REMARK 500 O HOH X 1254 O HOH X 1462 2.19 REMARK 500 CG LEU X 41 O HOH X 1398 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 1236 O HOH X 1236 2655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 42 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP X 105 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 MET X 242 CG - SD - CE ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG X 285 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP X 299 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG X 329 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG X 329 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG X 329 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG X 329 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 20 -161.42 -115.98 REMARK 500 SER X 167 35.43 -140.64 REMARK 500 ASP X 299 -116.22 55.51 REMARK 500 GLN X 306 73.66 -102.41 REMARK 500 VAL X 310 -64.65 -124.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU X 29 O REMARK 620 2 ASP X 64 OD2 82.0 REMARK 620 3 ASN X 136 OD1 95.8 94.0 REMARK 620 4 GLU X 158 OE1 126.0 150.5 92.2 REMARK 620 5 GLU X 158 OE2 76.5 156.7 79.3 52.7 REMARK 620 6 GLY X 309 O 88.4 93.8 171.6 79.5 94.6 REMARK 620 7 HOH X1180 O 158.5 76.6 87.9 74.9 125.0 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE X 71 O REMARK 620 2 PHE X 71 N 53.2 REMARK 620 3 PHE X 71 O 96.8 133.3 REMARK 620 4 PHE X 71 N 133.3 112.5 59.3 REMARK 620 5 PHE X 71 O 96.8 59.4 96.7 53.2 REMARK 620 6 PHE X 71 N 59.4 112.5 53.2 112.5 133.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG X 76 NH2 REMARK 620 2 THR X 78 OG1 65.9 REMARK 620 3 SER X 80 OG 115.7 139.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FGR RELATED DB: PDB REMARK 999 REMARK 999 THE FIRST RESIDUE IS A PYROGLUTAMATE WHICH MIGHT APPEAR AS GLN REMARK 999 IN SWISSPROT BUT DEPOSITORS HAVE IT IN THE OPENED FORM AS GLU IN REMARK 999 THE STRUCTURE AS IN THEIR RELATED ENTRY (2FGR) OF THE SAME REMARK 999 PROTEIN. DBREF 2FGQ X 1 332 UNP P24305 OMP32_COMAC 20 351 SEQRES 1 X 332 GLN SER SER VAL THR LEU PHE GLY ILE VAL ASP THR ASN SEQRES 2 X 332 VAL ALA TYR VAL ASN LYS ASP ALA ALA GLY ASP SER ARG SEQRES 3 X 332 TYR GLY LEU GLY THR SER GLY ALA SER THR SER ARG LEU SEQRES 4 X 332 GLY LEU ARG GLY THR GLU ASP LEU GLY GLY GLY LEU LYS SEQRES 5 X 332 ALA GLY PHE TRP LEU GLU GLY GLU ILE PHE GLY ASP ASP SEQRES 6 X 332 GLY ASN ALA SER GLY PHE ASN PHE LYS ARG ARG SER THR SEQRES 7 X 332 VAL SER LEU SER GLY ASN PHE GLY GLU VAL ARG LEU GLY SEQRES 8 X 332 ARG ASP LEU VAL PRO THR SER GLN LYS LEU THR SER TYR SEQRES 9 X 332 ASP LEU PHE SER ALA THR GLY ILE GLY PRO PHE MET GLY SEQRES 10 X 332 PHE ARG ASN TRP ALA ALA GLY GLN GLY ALA ASP ASP ASN SEQRES 11 X 332 GLY ILE ARG ALA ASN ASN LEU ILE SER TYR TYR THR PRO SEQRES 12 X 332 ASN PHE GLY GLY PHE ASN ALA GLY PHE GLY TYR ALA PHE SEQRES 13 X 332 ASP GLU LYS GLN THR ILE GLY THR ALA ASP SER VAL GLY SEQRES 14 X 332 ARG TYR ILE GLY GLY TYR VAL ALA TYR ASP ASN GLY PRO SEQRES 15 X 332 LEU SER ALA SER LEU GLY LEU ALA GLN GLN LYS THR ALA SEQRES 16 X 332 VAL GLY GLY LEU ALA THR ASP ARG ASP GLU ILE THR LEU SEQRES 17 X 332 GLY ALA SER TYR ASN PHE GLY VAL ALA LYS LEU SER GLY SEQRES 18 X 332 LEU LEU GLN GLN THR LYS PHE LYS ARG ASP ILE GLY GLY SEQRES 19 X 332 ASP ILE LYS THR ASN SER TYR MET LEU GLY ALA SER ALA SEQRES 20 X 332 PRO VAL GLY GLY VAL GLY GLU VAL LYS LEU GLN TYR ALA SEQRES 21 X 332 LEU TYR ASP GLN LYS ALA ILE ASP SER LYS ALA HIS GLN SEQRES 22 X 332 ILE THR LEU GLY TYR VAL HIS ASN LEU SER LYS ARG THR SEQRES 23 X 332 ALA LEU TYR GLY ASN LEU ALA PHE LEU LYS ASN LYS ASP SEQRES 24 X 332 ALA SER THR LEU GLY LEU GLN ALA LYS GLY VAL TYR ALA SEQRES 25 X 332 GLY GLY VAL GLN ALA GLY GLU SER GLN THR GLY VAL GLN SEQRES 26 X 332 VAL GLY ILE ARG HIS ALA PHE HET BOG X1170 20 HET CA X 501 1 HET CA X 502 1 HET CA X 503 1 HET SO4 X 600 5 HET SO4 X 601 5 HET MLT X 700 9 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM MLT D-MALATE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 2 BOG C14 H28 O6 FORMUL 3 CA 3(CA 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 MLT C4 H6 O5 FORMUL 9 HOH *377(H2 O) HELIX 1 1 VAL X 95 THR X 102 1 8 HELIX 2 2 SER X 103 ASP X 105 5 3 HELIX 3 3 ALA X 266 ASP X 268 5 3 SHEET 1 A18 ARG X 26 THR X 31 0 SHEET 2 A18 VAL X 4 VAL X 17 -1 N ASN X 13 O GLY X 30 SHEET 3 A18 SER X 320 PHE X 332 -1 O VAL X 326 N VAL X 14 SHEET 4 A18 THR X 286 ASN X 297 -1 N ALA X 287 O ARG X 329 SHEET 5 A18 SER X 269 ASN X 281 -1 N HIS X 280 O LEU X 288 SHEET 6 A18 GLY X 253 GLN X 264 -1 N LYS X 256 O GLY X 277 SHEET 7 A18 ASP X 235 VAL X 249 -1 N ASN X 239 O ASP X 263 SHEET 8 A18 LYS X 218 ARG X 230 -1 N GLN X 224 O SER X 240 SHEET 9 A18 LEU X 199 ASN X 213 -1 N ASP X 204 O LYS X 227 SHEET 10 A18 LEU X 183 VAL X 196 -1 N GLN X 192 O ARG X 203 SHEET 11 A18 TYR X 171 ASP X 179 -1 N VAL X 176 O LEU X 187 SHEET 12 A18 PHE X 148 ALA X 155 -1 N GLY X 153 O GLY X 173 SHEET 13 A18 LEU X 137 TYR X 141 -1 N TYR X 140 O PHE X 152 SHEET 14 A18 GLY X 86 LEU X 90 -1 N GLU X 87 O TYR X 141 SHEET 15 A18 ARG X 76 GLY X 83 -1 N VAL X 79 O LEU X 90 SHEET 16 A18 LEU X 51 GLU X 60 -1 N GLU X 58 O ARG X 76 SHEET 17 A18 ARG X 38 GLY X 48 -1 N LEU X 41 O LEU X 57 SHEET 18 A18 VAL X 4 VAL X 17 -1 N THR X 5 O ARG X 42 SHEET 1 B 2 ASP X 93 LEU X 94 0 SHEET 2 B 2 ARG X 133 ALA X 134 -1 O ALA X 134 N ASP X 93 LINK O LEU X 29 CA CA X 501 1555 1555 2.38 LINK OD2 ASP X 64 CA CA X 501 1555 1555 2.40 LINK O PHE X 71 CA CA X 502 1555 1555 2.88 LINK N PHE X 71 CA CA X 502 1555 1555 3.28 LINK O PHE X 71 CA CA X 502 2655 1555 2.88 LINK N PHE X 71 CA CA X 502 3665 1555 3.28 LINK O PHE X 71 CA CA X 502 3665 1555 2.88 LINK N PHE X 71 CA CA X 502 2655 1555 3.28 LINK NH2 ARG X 76 CA CA X 503 1555 1555 3.35 LINK OG1 THR X 78 CA CA X 503 1555 1555 3.09 LINK OG SER X 80 CA CA X 503 1555 1555 3.00 LINK OD1 ASN X 136 CA CA X 501 3665 1555 2.33 LINK OE1 GLU X 158 CA CA X 501 3665 1555 2.52 LINK OE2 GLU X 158 CA CA X 501 3665 1555 2.49 LINK O GLY X 309 CA CA X 501 1555 1555 2.28 LINK CA CA X 501 O HOH X1180 1555 1555 2.46 CRYST1 106.210 106.210 93.210 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009410 0.005440 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010730 0.00000