PDB Short entry for 2FP4 HEADER LIGASE 15-JAN-06 2FP4 TITLE CRYSTAL STRUCTURE OF PIG GTP-SPECIFIC SUCCINYL-COA TITLE 2 SYNTHETASE IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-COA LIGASE [GDP-FORMING] ALPHA-CHAIN, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SUCCINYL-COA SYNTHETASE, ALPHA CHAIN, SCS-ALPHA; COMPND 6 EC: 6.2.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUCCINYL-COA LIGASE [GDP-FORMING] BETA-CHAIN, COMPND 10 MITOCHONDRIAL; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: SUCCINYL-COA SYNTHETASE, BETAG CHAIN, SCS-BETAG, COMPND 13 GTP- SPECIFIC SUCCINYL-COA SYNTHETASE BETA SUBUNIT, COMPND 14 FRAGMENT; COMPND 15 EC: 6.2.1.4; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: SUCLG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 13 ORGANISM_COMMON: PIG; SOURCE 14 ORGANISM_TAXID: 9823; SOURCE 15 GENE: SUCLG2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS ACTIVE SITE PHOSPHOHISTIDINE RESIDUE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.FRASER REVDAT 3 24-FEB-09 2FP4 1 VERSN REVDAT 2 02-MAY-06 2FP4 1 JRNL REVDAT 1 21-FEB-06 2FP4 0 JRNL AUTH M.E.FRASER,K.HAYAKAWA,M.S.HUME,D.G.RYAN,E.R.BROWNIE JRNL TITL INTERACTIONS OF GTP WITH THE ATP-GRASP DOMAIN OF JRNL TITL 2 GTP-SPECIFIC SUCCINYL-COA SYNTHETASE JRNL REF J.BIOL.CHEM. V. 281 11058 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16481318 JRNL DOI 10.1074/JBC.M511785200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 116.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 43486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2235 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 44 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 828 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23900 REMARK 3 B22 (A**2) : 1.23900 REMARK 3 B33 (A**2) : -2.47700 REMARK 3 B12 (A**2) : -1.67400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 56.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_NEP_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GTP_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FP4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 116.038 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : 0.36200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM GTP, 10 MM MGCL2, 20% W/V REMARK 280 POLYLETHYLENE GLYCOL 3350, 150 MM KF, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.17667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.26500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.08833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.44167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 394 REMARK 465 LYS B 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 79 O HOH A 378 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 137 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 VAL B 44 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 PHE B 208 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 221 28.34 -142.83 REMARK 500 ASN B 126 39.74 39.00 REMARK 500 LEU B 348 140.45 -39.48 REMARK 500 PRO B 374 41.86 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 220 OD2 REMARK 620 2 GTP B 403 O2A 83.6 REMARK 620 3 GTP B 403 O2B 107.0 73.0 REMARK 620 4 ASN B 206 O 89.3 120.8 160.4 REMARK 620 5 HOH B 488 O 80.5 138.1 75.1 97.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP B 404 O2G REMARK 620 2 GTP B 404 O1A 104.2 REMARK 620 3 HOH B 499 O 114.9 140.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EUC RELATED DB: PDB REMARK 900 RELATED ID: 1EUD RELATED DB: PDB REMARK 900 RELATED ID: 2FPG RELATED DB: PDB REMARK 900 RELATED ID: 2FPI RELATED DB: PDB REMARK 900 RELATED ID: 2FPP RELATED DB: PDB DBREF 2FP4 A 3 306 UNP O19069-2 SUCA_PIG 29 332 DBREF 2FP4 B 2 395 UNP P53590 SUCB2_PIG 40 433 SEQADV 2FP4 SER A 2 UNP O19069-2 CLONING ARTIFACT SEQADV 2FP4 NEP A 259 UNP O19069-2 HIS 285 MODIFIED RESIDUE SEQADV 2FP4 MET B 1 UNP P53590 INITIATING METHIONINE SEQRES 1 A 305 SER TYR THR ALA SER ARG LYS HIS LEU TYR VAL ASP LYS SEQRES 2 A 305 ASN THR LYS VAL ILE CYS GLN GLY PHE THR GLY LYS GLN SEQRES 3 A 305 GLY THR PHE HIS SER GLN GLN ALA LEU GLU TYR GLY THR SEQRES 4 A 305 ASN LEU VAL GLY GLY THR THR PRO GLY LYS GLY GLY LYS SEQRES 5 A 305 THR HIS LEU GLY LEU PRO VAL PHE ASN THR VAL LYS GLU SEQRES 6 A 305 ALA LYS GLU GLN THR GLY ALA THR ALA SER VAL ILE TYR SEQRES 7 A 305 VAL PRO PRO PRO PHE ALA ALA ALA ALA ILE ASN GLU ALA SEQRES 8 A 305 ILE ASP ALA GLU VAL PRO LEU VAL VAL CYS ILE THR GLU SEQRES 9 A 305 GLY ILE PRO GLN GLN ASP MET VAL ARG VAL LYS HIS ARG SEQRES 10 A 305 LEU LEU ARG GLN GLY LYS THR ARG LEU ILE GLY PRO ASN SEQRES 11 A 305 CYS PRO GLY VAL ILE ASN PRO GLY GLU CYS LYS ILE GLY SEQRES 12 A 305 ILE MET PRO GLY HIS ILE HIS LYS LYS GLY ARG ILE GLY SEQRES 13 A 305 ILE VAL SER ARG SER GLY THR LEU THR TYR GLU ALA VAL SEQRES 14 A 305 HIS GLN THR THR GLN VAL GLY LEU GLY GLN SER LEU CYS SEQRES 15 A 305 VAL GLY ILE GLY GLY ASP PRO PHE ASN GLY THR ASP PHE SEQRES 16 A 305 THR ASP CYS LEU GLU ILE PHE LEU ASN ASP PRO ALA THR SEQRES 17 A 305 GLU GLY ILE ILE LEU ILE GLY GLU ILE GLY GLY ASN ALA SEQRES 18 A 305 GLU GLU ASN ALA ALA GLU PHE LEU LYS GLN HIS ASN SER SEQRES 19 A 305 GLY PRO LYS SER LYS PRO VAL VAL SER PHE ILE ALA GLY SEQRES 20 A 305 LEU THR ALA PRO PRO GLY ARG ARG MET GLY NEP ALA GLY SEQRES 21 A 305 ALA ILE ILE ALA GLY GLY LYS GLY GLY ALA LYS GLU LYS SEQRES 22 A 305 ILE THR ALA LEU GLN SER ALA GLY VAL VAL VAL SER MET SEQRES 23 A 305 SER PRO ALA GLN LEU GLY THR THR ILE TYR LYS GLU PHE SEQRES 24 A 305 GLU LYS ARG LYS MET LEU SEQRES 1 B 395 MET ASN LEU GLN GLU TYR GLN SER LYS LYS LEU MET SER SEQRES 2 B 395 ASP ASN GLY VAL LYS VAL GLN ARG PHE PHE VAL ALA ASP SEQRES 3 B 395 THR ALA ASN GLU ALA LEU GLU ALA ALA LYS ARG LEU ASN SEQRES 4 B 395 ALA LYS GLU ILE VAL LEU LYS ALA GLN ILE LEU ALA GLY SEQRES 5 B 395 GLY ARG GLY LYS GLY VAL PHE SER SER GLY LEU LYS GLY SEQRES 6 B 395 GLY VAL HIS LEU THR LYS ASP PRO GLU VAL VAL GLY GLN SEQRES 7 B 395 LEU ALA LYS GLN MET ILE GLY TYR ASN LEU ALA THR LYS SEQRES 8 B 395 GLN THR PRO LYS GLU GLY VAL LYS VAL ASN LYS VAL MET SEQRES 9 B 395 VAL ALA GLU ALA LEU ASP ILE SER ARG GLU THR TYR LEU SEQRES 10 B 395 ALA ILE LEU MET ASP ARG SER CYS ASN GLY PRO VAL LEU SEQRES 11 B 395 VAL GLY SER PRO GLN GLY GLY VAL ASP ILE GLU GLU VAL SEQRES 12 B 395 ALA ALA SER ASN PRO GLU LEU ILE PHE LYS GLU GLN ILE SEQRES 13 B 395 ASP ILE ILE GLU GLY ILE LYS ASP SER GLN ALA GLN ARG SEQRES 14 B 395 MET ALA GLU ASN LEU GLY PHE LEU GLY PRO LEU GLN ASN SEQRES 15 B 395 GLN ALA ALA ASP GLN ILE LYS LYS LEU TYR ASN LEU PHE SEQRES 16 B 395 LEU LYS ILE ASP ALA THR GLN VAL GLU VAL ASN PRO PHE SEQRES 17 B 395 GLY GLU THR PRO GLU GLY GLN VAL VAL CYS PHE ASP ALA SEQRES 18 B 395 LYS ILE ASN PHE ASP ASP ASN ALA GLU PHE ARG GLN LYS SEQRES 19 B 395 ASP ILE PHE ALA MET ASP ASP LYS SER GLU ASN GLU PRO SEQRES 20 B 395 ILE GLU ASN GLU ALA ALA LYS TYR ASP LEU LYS TYR ILE SEQRES 21 B 395 GLY LEU ASP GLY ASN ILE ALA CYS PHE VAL ASN GLY ALA SEQRES 22 B 395 GLY LEU ALA MET ALA THR CYS ASP ILE ILE PHE LEU ASN SEQRES 23 B 395 GLY GLY LYS PRO ALA ASN PHE LEU ASP LEU GLY GLY GLY SEQRES 24 B 395 VAL LYS GLU SER GLN VAL TYR GLN ALA PHE LYS LEU LEU SEQRES 25 B 395 THR ALA ASP PRO LYS VAL GLU ALA ILE LEU VAL ASN ILE SEQRES 26 B 395 PHE GLY GLY ILE VAL ASN CYS ALA ILE ILE ALA ASN GLY SEQRES 27 B 395 ILE THR LYS ALA CYS ARG GLU LEU GLU LEU LYS VAL PRO SEQRES 28 B 395 LEU VAL VAL ARG LEU GLU GLY THR ASN VAL HIS GLU ALA SEQRES 29 B 395 GLN ASN ILE LEU THR ASN SER GLY LEU PRO ILE THR SER SEQRES 30 B 395 ALA VAL ASP LEU GLU ASP ALA ALA LYS LYS ALA VAL ALA SEQRES 31 B 395 SER VAL THR LYS LYS MODRES 2FP4 NEP A 259 HIS N1-PHOSPHONOHISTIDINE HET NEP A 259 14 HET K B 401 1 HET MG B 402 1 HET GTP B 403 32 HET GTP B 404 32 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 1 NEP C6 H10 N3 O5 P FORMUL 3 K K 1+ FORMUL 4 MG MG 2+ FORMUL 5 GTP 2(C10 H16 N5 O14 P3) FORMUL 7 HOH *294(H2 O) HELIX 1 1 TYR A 3 TYR A 11 5 9 HELIX 2 2 GLY A 25 GLY A 39 1 15 HELIX 3 3 THR A 63 GLY A 72 1 10 HELIX 4 4 PRO A 81 ALA A 95 1 15 HELIX 5 5 PRO A 108 LEU A 120 1 13 HELIX 6 6 PRO A 147 HIS A 151 5 5 HELIX 7 7 GLY A 163 VAL A 176 1 14 HELIX 8 8 ASP A 195 ASP A 206 1 12 HELIX 9 9 ASN A 221 ASN A 234 1 14 HELIX 10 10 GLY A 270 ALA A 281 1 12 HELIX 11 11 GLN A 291 ARG A 303 1 13 HELIX 12 12 GLN B 4 ASN B 15 1 12 HELIX 13 13 THR B 27 ASN B 39 1 13 HELIX 14 14 GLY B 53 GLY B 57 5 5 HELIX 15 15 ASP B 72 GLN B 82 1 11 HELIX 16 16 ASP B 139 ASN B 147 1 9 HELIX 17 17 PRO B 148 ILE B 151 5 4 HELIX 18 18 LYS B 163 LEU B 174 1 12 HELIX 19 19 LEU B 177 ILE B 198 1 22 HELIX 20 20 ASP B 227 ARG B 232 5 6 HELIX 21 21 GLN B 233 ALA B 238 1 6 HELIX 22 22 GLU B 246 TYR B 255 1 10 HELIX 23 23 GLY B 272 ASN B 286 1 15 HELIX 24 24 LYS B 301 ASP B 315 1 15 HELIX 25 25 ASN B 331 GLU B 347 1 17 HELIX 26 26 ASN B 360 SER B 371 1 12 HELIX 27 27 ASP B 380 SER B 391 1 12 SHEET 1 A 7 THR A 54 HIS A 55 0 SHEET 2 A 7 LEU A 58 PHE A 61 -1 O LEU A 58 N HIS A 55 SHEET 3 A 7 ASN A 41 THR A 46 1 N GLY A 45 O PHE A 61 SHEET 4 A 7 LYS A 17 GLN A 21 1 N VAL A 18 O ASN A 41 SHEET 5 A 7 ALA A 75 ILE A 78 1 O VAL A 77 N GLN A 21 SHEET 6 A 7 LEU A 99 CYS A 102 1 O VAL A 101 N SER A 76 SHEET 7 A 7 ARG A 126 ILE A 128 1 O ARG A 126 N VAL A 100 SHEET 1 B 7 CYS A 141 GLY A 144 0 SHEET 2 B 7 GLY A 134 ASN A 137 -1 N VAL A 135 O ILE A 143 SHEET 3 B 7 GLN A 180 GLY A 185 -1 O GLY A 185 N GLY A 134 SHEET 4 B 7 LYS A 153 SER A 160 1 N ILE A 158 O VAL A 184 SHEET 5 B 7 GLY A 211 GLU A 217 1 O ILE A 213 N GLY A 157 SHEET 6 B 7 VAL A 242 ALA A 247 1 O ALA A 247 N GLY A 216 SHEET 7 B 7 VAL A 284 VAL A 285 1 O VAL A 284 N VAL A 242 SHEET 1 C 4 PHE B 22 ALA B 25 0 SHEET 2 C 4 VAL B 103 GLU B 107 -1 O VAL B 105 N PHE B 23 SHEET 3 C 4 ILE B 43 ALA B 47 -1 N LYS B 46 O MET B 104 SHEET 4 C 4 VAL B 67 THR B 70 -1 O HIS B 68 N LEU B 45 SHEET 1 D 3 VAL B 58 PHE B 59 0 SHEET 2 D 3 ASN B 87 ALA B 89 -1 O ALA B 89 N VAL B 58 SHEET 3 D 3 VAL B 98 LYS B 99 -1 O VAL B 98 N LEU B 88 SHEET 1 E 5 PHE B 152 GLN B 155 0 SHEET 2 E 5 GLY B 127 SER B 133 -1 N GLY B 132 O PHE B 152 SHEET 3 E 5 ARG B 113 ASP B 122 -1 N ALA B 118 O VAL B 131 SHEET 4 E 5 ALA B 200 GLU B 210 -1 O VAL B 205 N LEU B 117 SHEET 5 E 5 VAL B 216 CYS B 218 -1 O VAL B 217 N GLY B 209 SHEET 1 F 5 PHE B 152 GLN B 155 0 SHEET 2 F 5 GLY B 127 SER B 133 -1 N GLY B 132 O PHE B 152 SHEET 3 F 5 ARG B 113 ASP B 122 -1 N ALA B 118 O VAL B 131 SHEET 4 F 5 ALA B 200 GLU B 210 -1 O VAL B 205 N LEU B 117 SHEET 5 F 5 ALA B 221 PHE B 225 -1 O LYS B 222 N GLU B 204 SHEET 1 G 2 LYS B 258 GLY B 261 0 SHEET 2 G 2 ASN B 292 ASP B 295 -1 O PHE B 293 N ILE B 260 SHEET 1 H 4 ILE B 266 VAL B 270 0 SHEET 2 H 4 ALA B 320 GLY B 327 1 O LEU B 322 N ALA B 267 SHEET 3 H 4 LEU B 352 GLY B 358 1 O GLU B 357 N GLY B 327 SHEET 4 H 4 THR B 376 SER B 377 1 O THR B 376 N VAL B 354 LINK C GLY A 258 N NEP A 259 1555 1555 1.34 LINK C NEP A 259 N ALA A 260 1555 1555 1.33 LINK K K B 401 OD2 ASP B 220 1555 1555 2.84 LINK K K B 401 O2A GTP B 403 1555 1555 3.04 LINK K K B 401 O2B GTP B 403 1555 1555 3.00 LINK K K B 401 O ASN B 206 1555 1555 2.63 LINK K K B 401 O HOH B 488 1555 1555 2.65 LINK MG MG B 402 O2G GTP B 404 1555 1555 2.60 LINK MG MG B 402 O1A GTP B 404 1555 1555 2.21 LINK MG MG B 402 O HOH B 499 1555 4765 2.75 CISPEP 1 GLY A 129 PRO A 130 0 0.82 CISPEP 2 ASN B 206 PRO B 207 0 0.27 SITE 1 AC1 4 ASN B 206 ASP B 220 GTP B 403 HOH B 488 SITE 1 AC2 3 SER B 165 GTP B 404 HOH B 499 SITE 1 AC3 19 GLN B 20 VAL B 44 GLY B 52 GLY B 53 SITE 2 AC3 19 ARG B 54 GLY B 55 VAL B 67 LEU B 69 SITE 3 AC3 19 ALA B 108 LEU B 109 GLU B 114 PHE B 219 SITE 4 AC3 19 ASP B 220 LYS B 222 K B 401 HOH B 487 SITE 5 AC3 19 HOH B 488 HOH B 489 HOH B 511 SITE 1 AC4 12 LYS A 50 GLY B 55 LYS B 56 LYS B 64 SITE 2 AC4 12 LYS B 163 ASP B 164 SER B 165 GLN B 168 SITE 3 AC4 12 ARG B 169 GLU B 172 MG B 402 HOH B 474 CRYST1 132.610 132.610 72.530 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007541 0.004354 0.000000 0.00000 SCALE2 0.000000 0.008707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013787 0.00000