PDB Short entry for 2FQA HEADER PLANT PROTEIN 17-JAN-06 2FQA TITLE VIOLACIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIOLACIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-27; COMPND 5 SYNONYM: VIOLACIN A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA ODORATA; SOURCE 3 ORGANISM_TAXID: 97441 KEYWDS CYSTINE KNOT, BETA SHEET, BETA TURNS, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.C.IRELAND,D.J.CRAIK,N.L.DALY REVDAT 5 09-MAR-22 2FQA 1 REMARK REVDAT 4 24-FEB-09 2FQA 1 VERSN REVDAT 3 11-APR-06 2FQA 1 JRNL REVDAT 2 28-FEB-06 2FQA 1 DBREF REMARK COMPND REVDAT 1 31-JAN-06 2FQA 0 JRNL AUTH D.C.IRELAND,M.L.COLGRAVE,P.NGUYENCONG,N.L.DALY,D.J.CRAIK JRNL TITL DISCOVERY AND CHARACTERIZATION OF A LINEAR CYCLOTIDE FROM JRNL TITL 2 VIOLA ODORATA: IMPLICATIONS FOR THE PROCESSING OF CIRCULAR JRNL TITL 3 PROTEINS JRNL REF J.MOL.BIOL. V. 357 1522 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16488428 JRNL DOI 10.1016/J.JMB.2006.01.051 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, DYANA 1.5 REMARK 3 AUTHORS : BRUKER AG, KARLSRUHE, GERMANY (XWINNMR), REMARK 3 GUNTERT,P., MUMENTHALER,C., WUTHRICH,K. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FQA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036181. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 3.8; 7 REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM VIOLACIN A; 1MM VIOLACIN A REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; DQF-COSY; E REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : ARX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANNEALING FOLLOWED BY MOLECULAR REMARK 210 DYNAMICS AND ENERGY MINIMIZATION REMARK 210 IN A WATER SHELL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -166.77 -76.98 REMARK 500 1 SER A 4 41.28 -74.17 REMARK 500 1 CYS A 5 -120.02 -131.96 REMARK 500 1 LYS A 11 -98.18 70.80 REMARK 500 1 PHE A 12 63.96 -151.63 REMARK 500 1 TYR A 15 28.09 -149.95 REMARK 500 1 CYS A 19 71.37 -151.93 REMARK 500 1 TYR A 23 120.80 -32.17 REMARK 500 1 PRO A 24 43.73 -105.13 REMARK 500 2 CYS A 5 -120.78 -136.58 REMARK 500 2 PHE A 10 50.27 -90.46 REMARK 500 2 LYS A 11 -113.79 -176.16 REMARK 500 2 PHE A 12 51.22 -151.50 REMARK 500 2 TYR A 15 24.23 -142.71 REMARK 500 2 ARG A 18 41.66 76.98 REMARK 500 2 TYR A 23 129.82 -39.89 REMARK 500 2 PRO A 24 41.56 -103.48 REMARK 500 3 ALA A 2 -70.56 -82.20 REMARK 500 3 CYS A 5 -42.18 -149.23 REMARK 500 3 PHE A 10 40.05 -95.14 REMARK 500 3 LYS A 11 -116.06 -166.38 REMARK 500 3 TYR A 15 28.82 -157.60 REMARK 500 3 CYS A 19 61.56 -153.31 REMARK 500 3 TYR A 23 130.33 -33.43 REMARK 500 3 PRO A 24 40.12 -100.35 REMARK 500 4 CYS A 5 -114.02 -130.38 REMARK 500 4 CYS A 9 89.24 -151.27 REMARK 500 4 LYS A 11 -118.52 178.92 REMARK 500 4 PHE A 12 46.77 -151.57 REMARK 500 4 PRO A 24 44.89 -104.15 REMARK 500 5 SER A 4 61.07 -65.01 REMARK 500 5 CYS A 5 -44.67 -133.19 REMARK 500 5 PHE A 10 35.24 -93.88 REMARK 500 5 LYS A 11 -111.97 -159.38 REMARK 500 5 PHE A 12 56.69 -151.18 REMARK 500 5 TYR A 15 29.44 -157.09 REMARK 500 5 CYS A 19 54.60 -152.45 REMARK 500 5 TYR A 23 129.55 -37.34 REMARK 500 5 PRO A 24 41.50 -102.57 REMARK 500 6 LYS A 11 -111.85 -103.37 REMARK 500 6 TYR A 15 27.90 -148.47 REMARK 500 6 TYR A 23 129.56 -36.45 REMARK 500 6 PRO A 24 41.32 -103.72 REMARK 500 7 ALA A 2 -52.82 -164.05 REMARK 500 7 GLU A 7 -162.05 -178.44 REMARK 500 7 LYS A 11 -112.03 -177.79 REMARK 500 7 PHE A 12 65.62 -150.59 REMARK 500 7 TYR A 15 59.53 -157.03 REMARK 500 7 PRO A 17 124.57 -38.48 REMARK 500 7 TYR A 23 132.00 -39.82 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2FQA A 1 27 GB 86285728 ABC94585 80 106 SEQRES 1 A 27 SER ALA ILE SER CYS GLY GLU THR CYS PHE LYS PHE LYS SEQRES 2 A 27 CYS TYR THR PRO ARG CYS SER CYS SER TYR PRO VAL CYS SEQRES 3 A 27 LYS SHEET 1 A 3 TYR A 15 THR A 16 0 SHEET 2 A 3 CYS A 19 SER A 22 -1 O CYS A 19 N THR A 16 SHEET 3 A 3 VAL A 25 LYS A 27 -1 O LYS A 27 N SER A 20 SSBOND 1 CYS A 5 CYS A 19 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 21 1555 1555 2.02 SSBOND 3 CYS A 14 CYS A 26 1555 1555 2.03 CISPEP 1 TYR A 23 PRO A 24 1 0.87 CISPEP 2 TYR A 23 PRO A 24 2 1.82 CISPEP 3 TYR A 23 PRO A 24 3 1.78 CISPEP 4 TYR A 23 PRO A 24 4 1.75 CISPEP 5 TYR A 23 PRO A 24 5 1.64 CISPEP 6 TYR A 23 PRO A 24 6 1.47 CISPEP 7 TYR A 23 PRO A 24 7 1.07 CISPEP 8 TYR A 23 PRO A 24 8 1.98 CISPEP 9 TYR A 23 PRO A 24 9 1.98 CISPEP 10 TYR A 23 PRO A 24 10 1.83 CISPEP 11 TYR A 23 PRO A 24 11 1.70 CISPEP 12 TYR A 23 PRO A 24 12 0.90 CISPEP 13 TYR A 23 PRO A 24 13 1.16 CISPEP 14 TYR A 23 PRO A 24 14 0.95 CISPEP 15 TYR A 23 PRO A 24 15 0.95 CISPEP 16 TYR A 23 PRO A 24 16 0.75 CISPEP 17 TYR A 23 PRO A 24 17 0.81 CISPEP 18 TYR A 23 PRO A 24 18 1.58 CISPEP 19 TYR A 23 PRO A 24 19 1.41 CISPEP 20 TYR A 23 PRO A 24 20 1.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000