PDB Short entry for 2FUY HEADER HYDROLASE 28-JAN-06 2FUY TITLE AUTOPHAGIN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEASE ATG4A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 4 HOMOLOG A, HAPG4A, COMPND 5 AUTOPHAGIN-2, AUTOPHAGY-RELATED CYSTEINE ENDOPEPTIDASE 2, COMPND 6 AUT-LIKE 2 CYSTEINE ENDOPEPTIDASE; COMPND 7 EC: 3.4.22.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS APG4A EXPDTA THEORETICAL MODEL AUTHOR N.VIDYA,R.MAHMOOD,D.SIVAKUMAR,S.ALEX REVDAT 1 14-FEB-06 2FUY 0 JRNL AUTH N.VIDYA,R.MAHOMOOD,D.SIVAKUMAR,S.ALEX JRNL TITL ATG4A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 8V1 REMARK 3 AUTHORS : ANDREJ SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FUY COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-2006. REMARK 100 THE RCSB ID CODE IS RCSB036342. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELLING REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 348 N - CA - C ANGL. DEV. =-14.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 290 159.42 52.48 DBREF 2FUY A 1 398 UNP Q8WYN0 ATG4A_HUMAN 1 398 SEQRES 1 A 398 MET GLU SER VAL LEU SER LYS TYR GLU ASP GLN ILE THR SEQRES 2 A 398 ILE PHE THR ASP TYR LEU GLU GLU TYR PRO ASP THR ASP SEQRES 3 A 398 GLU LEU VAL TRP ILE LEU GLY LYS GLN HIS LEU LEU LYS SEQRES 4 A 398 THR GLU LYS SER LYS LEU LEU SER ASP ILE SER ALA ARG SEQRES 5 A 398 LEU TRP PHE THR TYR ARG ARG LYS PHE SER PRO ILE GLY SEQRES 6 A 398 GLY THR GLY PRO SER SER ASP ALA GLY TRP GLY CYS MET SEQRES 7 A 398 LEU ARG CYS GLY GLN MET MET LEU ALA GLN ALA LEU ILE SEQRES 8 A 398 CYS ARG HIS LEU GLY ARG ASP TRP SER TRP GLU LYS GLN SEQRES 9 A 398 LYS GLU GLN PRO LYS GLU TYR GLN ARG ILE LEU GLN CYS SEQRES 10 A 398 PHE LEU ASP ARG LYS ASP CYS CYS TYR SER ILE HIS GLN SEQRES 11 A 398 MET ALA GLN MET GLY VAL GLY GLU GLY LYS SER ILE GLY SEQRES 12 A 398 GLU TRP PHE GLY PRO ASN THR VAL ALA GLN VAL LEU LYS SEQRES 13 A 398 LYS LEU ALA LEU PHE ASP GLU TRP ASN SER LEU ALA VAL SEQRES 14 A 398 TYR VAL SER MET ASP ASN THR VAL VAL ILE GLU ASP ILE SEQRES 15 A 398 LYS LYS MET CYS ARG VAL LEU PRO LEU SER ALA ASP THR SEQRES 16 A 398 ALA GLY ASP ARG PRO PRO ASP SER LEU THR ALA SER ASN SEQRES 17 A 398 GLN SER LYS GLY THR SER ALA TYR CYS SER ALA TRP LYS SEQRES 18 A 398 PRO LEU LEU LEU ILE VAL PRO LEU ARG LEU GLY ILE ASN SEQRES 19 A 398 GLN ILE ASN PRO VAL TYR VAL ASP ALA PHE LYS GLU CYS SEQRES 20 A 398 PHE LYS MET PRO GLN SER LEU GLY ALA LEU GLY GLY LYS SEQRES 21 A 398 PRO ASN ASN ALA TYR TYR PHE ILE GLY PHE LEU GLY ASP SEQRES 22 A 398 GLU LEU ILE PHE LEU ASP PRO HIS THR THR GLN THR PHE SEQRES 23 A 398 VAL ASP THR GLU GLU ASN GLY THR VAL ASN ASP GLN THR SEQRES 24 A 398 PHE HIS CYS LEU GLN SER PRO GLN ARG MET ASN ILE LEU SEQRES 25 A 398 ASN LEU ASP PRO SER VAL ALA LEU GLY PHE PHE CYS LYS SEQRES 26 A 398 GLU GLU LYS ASP PHE ASP ASN TRP CYS SER LEU VAL GLN SEQRES 27 A 398 LYS GLU ILE LEU LYS GLU ASN LEU ARG MET PHE GLU LEU SEQRES 28 A 398 VAL GLN LYS HIS PRO SER HIS TRP PRO PRO PHE VAL PRO SEQRES 29 A 398 PRO ALA LYS PRO GLU VAL THR THR THR GLY ALA GLU PHE SEQRES 30 A 398 ILE ASP SER THR GLU GLN LEU GLU GLU PHE ASP LEU GLU SEQRES 31 A 398 GLU ASP PHE GLU ILE LEU SER VAL HELIX 1 1 MET A 1 ASP A 10 1 10 HELIX 2 2 GLN A 11 ASP A 17 5 7 HELIX 3 3 LEU A 37 ARG A 52 1 16 HELIX 4 4 GLY A 76 LEU A 95 1 20 HELIX 5 5 PRO A 108 CYS A 117 1 10 HELIX 6 6 SER A 127 GLU A 138 1 12 HELIX 7 7 GLY A 147 LEU A 160 1 14 HELIX 8 8 ILE A 179 ARG A 187 1 9 HELIX 9 9 ASN A 237 LYS A 249 1 13 HELIX 10 10 ASP A 297 HIS A 301 5 5 HELIX 11 11 LEU A 312 LEU A 314 5 3 HELIX 12 12 GLU A 326 ILE A 341 1 16 HELIX 13 13 PRO A 365 THR A 371 1 7 SHEET 1 A 7 LYS A 34 HIS A 36 0 SHEET 2 A 7 VAL A 29 ILE A 31 -1 N ILE A 31 O LYS A 34 SHEET 3 A 7 ASN A 263 LEU A 271 -1 O PHE A 270 N TRP A 30 SHEET 4 A 7 SER A 253 LYS A 260 -1 N ALA A 256 O PHE A 267 SHEET 5 A 7 SER A 317 CYS A 324 -1 O GLY A 321 N GLY A 255 SHEET 6 A 7 LEU A 223 ARG A 230 -1 N LEU A 225 O PHE A 322 SHEET 7 A 7 ALA A 168 VAL A 171 1 N ALA A 168 O LEU A 224 SHEET 1 B 5 LYS A 34 HIS A 36 0 SHEET 2 B 5 VAL A 29 ILE A 31 -1 N ILE A 31 O LYS A 34 SHEET 3 B 5 ASN A 263 LEU A 271 -1 O PHE A 270 N TRP A 30 SHEET 4 B 5 GLU A 274 LEU A 278 -1 O ILE A 276 N GLY A 269 SHEET 5 B 5 GLN A 307 ASN A 310 -1 O MET A 309 N LEU A 275 SHEET 1 C 2 TYR A 57 ARG A 59 0 SHEET 2 C 2 THR A 283 THR A 285 1 O GLN A 284 N TYR A 57 SHEET 1 D 2 THR A 176 VAL A 178 0 SHEET 2 D 2 GLU A 350 VAL A 352 1 O GLU A 350 N VAL A 177 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000