PDB Short entry for 2FV8 HEADER SIGNALING PROTEIN 30-JAN-06 2FV8 TITLE THE CRYSTAL STRUCTURE OF RHOB IN THE GDP-BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-RELATED GTP-BINDING PROTEIN RHOB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 4-187; COMPND 5 SYNONYM: H6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHOB, ARH6, ARHB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3)R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS RHOB, GDP/GTP BINDING, GTP HYDROLYSIS, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.P.TURNBULL,M.SOUNDARARAJAN,C.SMEE,C.JOHANSSON,G.SCHOCH,F.GORREC, AUTHOR 2 J.BRAY,E.PAPAGRIGORIOU,F.VON DELFT,J.WEIGELT,A.EDWARDS,C.ARROWSMITH, AUTHOR 3 M.SUNDSTROM,D.DOYLE,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 03-APR-24 2FV8 1 REMARK REVDAT 4 14-FEB-24 2FV8 1 REMARK SEQADV REVDAT 3 13-JUL-11 2FV8 1 VERSN REVDAT 2 24-FEB-09 2FV8 1 VERSN REVDAT 1 28-FEB-06 2FV8 0 JRNL AUTH A.P.TURNBULL,M.SOUNDARARAJAN,C.SMEE,C.JOHANSSON,G.SCHOCH, JRNL AUTH 2 F.GORREC,J.BRAY,E.PAPAGRIGORIOU,F.VON DELFT,J.WEIGELT, JRNL AUTH 3 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,D.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF RHOB IN THE GDP-BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 14125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1440 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 963 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1959 ; 1.413 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2346 ; 0.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;33.300 ;24.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 236 ;13.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1581 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 284 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 998 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 693 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 719 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 936 ; 0.635 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 358 ; 0.133 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1447 ; 0.951 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 601 ; 1.481 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 512 ; 2.164 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 0 REMARK 3 RESIDUE RANGE : A 4 A 31 REMARK 3 RESIDUE RANGE : A 39 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9339 37.0950 8.3375 REMARK 3 T TENSOR REMARK 3 T11: -0.1429 T22: -0.1278 REMARK 3 T33: -0.1547 T12: -0.0209 REMARK 3 T13: -0.0011 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 2.3366 L22: 1.7019 REMARK 3 L33: 4.6392 L12: -0.2866 REMARK 3 L13: -0.0671 L23: -0.1192 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0527 S13: -0.1224 REMARK 3 S21: 0.0298 S22: 0.0409 S23: -0.0402 REMARK 3 S31: -0.1095 S32: 0.6224 S33: -0.0532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SWISSMODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 3350, 0.075M AMMONIUM REMARK 280 CITRATE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.75950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.11650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.75950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.11650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 GLU A 32 REMARK 465 VAL A 33 REMARK 465 TYR A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 36 REMARK 465 THR A 37 REMARK 465 VAL A 38 REMARK 465 GLN A 186 REMARK 465 ASN A 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A -4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A -3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 27 CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 MET A 134 CG SD CE REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 GLU A 137 CD OE1 OE2 REMARK 470 LYS A 162 CE NZ REMARK 470 LYS A 164 CE NZ REMARK 470 ARG A 182 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 40 177.66 164.04 REMARK 500 LYS A 98 -59.33 -128.77 REMARK 500 LYS A 164 -8.32 75.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 40 ASN A 41 143.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 201 DBREF 2FV8 A 4 187 UNP P62745 RHOB_HUMAN 4 187 SEQADV 2FV8 MET A -22 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 HIS A -21 UNP P62745 EXPRESSION TAG SEQADV 2FV8 HIS A -20 UNP P62745 EXPRESSION TAG SEQADV 2FV8 HIS A -19 UNP P62745 EXPRESSION TAG SEQADV 2FV8 HIS A -18 UNP P62745 EXPRESSION TAG SEQADV 2FV8 HIS A -17 UNP P62745 EXPRESSION TAG SEQADV 2FV8 HIS A -16 UNP P62745 EXPRESSION TAG SEQADV 2FV8 SER A -15 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 SER A -14 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 GLY A -13 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 VAL A -12 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 ASP A -11 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 LEU A -10 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 GLY A -9 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 THR A -8 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 GLU A -7 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 ASN A -6 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 LEU A -5 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 TYR A -4 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 PHE A -3 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 GLN A -2 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 SER A -1 UNP P62745 CLONING ARTIFACT SEQADV 2FV8 MET A 0 UNP P62745 CLONING ARTIFACT SEQRES 1 A 207 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 207 GLY THR GLU ASN LEU TYR PHE GLN SER MET ILE ARG LYS SEQRES 3 A 207 LYS LEU VAL VAL VAL GLY ASP GLY ALA CYS GLY LYS THR SEQRES 4 A 207 CYS LEU LEU ILE VAL PHE SER LYS ASP GLU PHE PRO GLU SEQRES 5 A 207 VAL TYR VAL PRO THR VAL PHE GLU ASN TYR VAL ALA ASP SEQRES 6 A 207 ILE GLU VAL ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP SEQRES 7 A 207 ASP THR ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 8 A 207 LEU SER TYR PRO ASP THR ASP VAL ILE LEU MET CYS PHE SEQRES 9 A 207 SER VAL ASP SER PRO ASP SER LEU GLU ASN ILE PRO GLU SEQRES 10 A 207 LYS TRP VAL PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL SEQRES 11 A 207 PRO ILE ILE LEU VAL ALA ASN LYS LYS ASP LEU ARG SER SEQRES 12 A 207 ASP GLU HIS VAL ARG THR GLU LEU ALA ARG MET LYS GLN SEQRES 13 A 207 GLU PRO VAL ARG THR ASP ASP GLY ARG ALA MET ALA VAL SEQRES 14 A 207 ARG ILE GLN ALA TYR ASP TYR LEU GLU CYS SER ALA LYS SEQRES 15 A 207 THR LYS GLU GLY VAL ARG GLU VAL PHE GLU THR ALA THR SEQRES 16 A 207 ARG ALA ALA LEU GLN LYS ARG TYR GLY SER GLN ASN HET GDP A 201 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *112(H2 O) HELIX 1 1 TYR A -4 MET A 0 5 5 HELIX 2 2 GLY A 17 ASP A 28 1 12 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 LYS A 98 1 11 HELIX 5 5 LYS A 98 CYS A 107 1 10 HELIX 6 6 LYS A 118 SER A 123 5 6 HELIX 7 7 ASP A 124 MET A 134 1 11 HELIX 8 8 ARG A 140 ILE A 151 1 12 HELIX 9 9 GLY A 166 GLN A 180 1 15 SHEET 1 A 6 ASN A 41 VAL A 48 0 SHEET 2 A 6 LYS A 51 ASP A 59 -1 O LEU A 55 N ALA A 44 SHEET 3 A 6 ARG A 5 GLY A 12 1 N LYS A 6 O ALA A 56 SHEET 4 A 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 A 6 ILE A 112 ASN A 117 1 O ASN A 117 N PHE A 84 SHEET 6 A 6 ASP A 155 GLU A 158 1 O LEU A 157 N LEU A 114 SITE 1 AC1 18 ASP A 13 ALA A 15 CYS A 16 GLY A 17 SITE 2 AC1 18 LYS A 18 THR A 19 CYS A 20 PHE A 30 SITE 3 AC1 18 ALA A 61 LYS A 118 ASP A 120 LEU A 121 SITE 4 AC1 18 SER A 160 ALA A 161 LYS A 162 HOH A 231 SITE 5 AC1 18 HOH A 237 HOH A 268 CRYST1 137.519 42.233 33.850 90.00 90.58 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007272 0.000000 0.000074 0.00000 SCALE2 0.000000 0.023678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029544 0.00000