PDB Short entry for 2G30 HEADER ENDOCYTOSIS/EXOCYTOSIS 17-FEB-06 2G30 TITLE BETA APPENDAGE OF AP2 COMPLEXED WITH ARH PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 701-937; COMPND 5 SYNONYM: ADAPTER-RELATED PROTEIN COMPLEX 2 BETA-1 SUBUNIT, COMPND 6 BETA-ADAPTIN, PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA COMPND 7 SUBUNIT, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE COMPND 8 CHAIN, AP105B, BETA APPENDAGE; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 16-MER PEPTIDE FROM LOW DENSITY LIPOPROTEIN COMPND 12 RECEPTOR ADAPTER PROTEIN 1; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: RESIDUES 1-16; COMPND 15 SYNONYM: AUTOSOMAL RECESSIVE HYPERCHOLESTEROLEMIA PROTEIN, COMPND 16 ARH PEPTIDE; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: PEPTIDE SEQUENCE AAF; COMPND 20 CHAIN: S; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AP2B1, CLAPB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(PLYSS); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMW172HIS6; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 14 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HUMAN(ARH SOURCE 15 RESIDUES 252-267).; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 19 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HUMAN. SOURCE 20 PROBABLY REPRESENTS THE RESIDUES EAF(257-259) OF DEGRADED SOURCE 21 ARH PEPTIDE SEQUENCE IN THE CRYSTAL KEYWDS ALPHA-HELICAL ARH PEPTIDE, PLATFORM DOMAIN, SANDWICH DOMAIN, KEYWDS 2 ENDOCYTOSIS, ADAPTOR, ENDOCYTOSIS/EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.EDELING,B.M.COLLINS,L.M.TRAUB,D.J.OWEN REVDAT 2 24-FEB-09 2G30 1 VERSN REVDAT 1 14-MAR-06 2G30 0 JRNL AUTH M.A.EDELING,S.K.MISHRA,P.A.KEYEL,A.L.STEINHAUSER, JRNL AUTH 2 B.M.COLLINS,R.ROTH,J.E.HEUSER,D.J.OWEN,L.M.TRAUB JRNL TITL MOLECULAR SWITCHES INVOLVING THE AP-2 BETA2 JRNL TITL 2 APPENDAGE REGULATE ENDOCYTIC CARGO SELECTION AND JRNL TITL 3 CLATHRIN COAT ASSEMBLY JRNL REF DEV.CELL V. 10 329 2006 JRNL REFN ISSN 1534-5807 JRNL PMID 16516836 JRNL DOI 10.1016/J.DEVCEL.2006.01.016 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 1.82000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2028 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1828 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2753 ; 1.458 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4272 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 6.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2231 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 331 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2007 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1210 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.753 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 1.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2041 ; 1.965 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 768 ; 2.798 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 4.576 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2G30 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1E42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 8000, 100MM HEPES PH 7.5, REMARK 280 4MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.15650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 3 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BETA-ADAPTIN PROTEIN IS PART OF THE ASSEMBLY PROTEIN REMARK 300 COMPLEX 2, (AP-2) THAT IS A HETEROTETRAMER COMPOSED OF REMARK 300 TWO LARGE CHAINS (ALPHA AND BETA), A MEDIUM CHAIN (AP50) REMARK 300 AND A SMALL CHAIN (AP17). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 GLY A 701 REMARK 465 MET A 702 REMARK 465 ALA A 703 REMARK 465 PRO A 704 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 732 CZ NH1 NH2 REMARK 470 GLN A 733 CG CD OE1 NE2 REMARK 470 GLU A 828 CD OE1 OE2 REMARK 470 ASP P 1 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 721 CE NZ REMARK 480 GLU A 724 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 909 O HOH A 36 1.95 REMARK 500 O HOH A 36 O HOH A 113 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 143 O HOH P 144 1455 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 829 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 906 PRO A 907 145.71 REMARK 500 ALA S 6 ALA S 7 -149.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 137 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH A 138 DISTANCE = 18.44 ANGSTROMS REMARK 525 HOH A 139 DISTANCE = 14.12 ANGSTROMS REMARK 525 HOH A 140 DISTANCE = 16.54 ANGSTROMS REMARK 525 HOH A 143 DISTANCE = 5.76 ANGSTROMS DBREF 2G30 A 701 937 UNP P63010 AP2B1_HUMAN 701 937 DBREF 2G30 P 1 16 UNP Q5SW96 ARH_HUMAN 252 267 DBREF 2G30 S 6 8 PDB 2G30 2G30 6 8 SEQADV 2G30 MET A -21 UNP P63010 CLONING ARTIFACT SEQADV 2G30 GLY A -20 UNP P63010 CLONING ARTIFACT SEQADV 2G30 SER A -19 UNP P63010 CLONING ARTIFACT SEQADV 2G30 SER A -18 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -17 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -16 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -15 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -14 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -13 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -12 UNP P63010 CLONING ARTIFACT SEQADV 2G30 SER A -11 UNP P63010 CLONING ARTIFACT SEQADV 2G30 SER A -10 UNP P63010 CLONING ARTIFACT SEQADV 2G30 GLY A -9 UNP P63010 CLONING ARTIFACT SEQADV 2G30 LEU A -8 UNP P63010 CLONING ARTIFACT SEQADV 2G30 VAL A -7 UNP P63010 CLONING ARTIFACT SEQADV 2G30 PRO A -6 UNP P63010 CLONING ARTIFACT SEQADV 2G30 ARG A -5 UNP P63010 CLONING ARTIFACT SEQADV 2G30 GLY A -4 UNP P63010 CLONING ARTIFACT SEQADV 2G30 SER A -3 UNP P63010 CLONING ARTIFACT SEQADV 2G30 HIS A -2 UNP P63010 CLONING ARTIFACT SEQADV 2G30 MET A -1 UNP P63010 CLONING ARTIFACT SEQRES 1 A 258 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 258 LEU VAL PRO ARG GLY SER HIS MET GLY MET ALA PRO GLY SEQRES 3 A 258 GLY TYR VAL ALA PRO LYS ALA VAL TRP LEU PRO ALA VAL SEQRES 4 A 258 LYS ALA LYS GLY LEU GLU ILE SER GLY THR PHE THR HIS SEQRES 5 A 258 ARG GLN GLY HIS ILE TYR MET GLU MET ASN PHE THR ASN SEQRES 6 A 258 LYS ALA LEU GLN HIS MET THR ASP PHE ALA ILE GLN PHE SEQRES 7 A 258 ASN LYS ASN SER PHE GLY VAL ILE PRO SER THR PRO LEU SEQRES 8 A 258 ALA ILE HIS THR PRO LEU MET PRO ASN GLN SER ILE ASP SEQRES 9 A 258 VAL SER LEU PRO LEU ASN THR LEU GLY PRO VAL MET LYS SEQRES 10 A 258 MET GLU PRO LEU ASN ASN LEU GLN VAL ALA VAL LYS ASN SEQRES 11 A 258 ASN ILE ASP VAL PHE TYR PHE SER CYS LEU ILE PRO LEU SEQRES 12 A 258 ASN VAL LEU PHE VAL GLU ASP GLY LYS MET GLU ARG GLN SEQRES 13 A 258 VAL PHE LEU ALA THR TRP LYS ASP ILE PRO ASN GLU ASN SEQRES 14 A 258 GLU LEU GLN PHE GLN ILE LYS GLU CYS HIS LEU ASN ALA SEQRES 15 A 258 ASP THR VAL SER SER LYS LEU GLN ASN ASN ASN VAL TYR SEQRES 16 A 258 THR ILE ALA LYS ARG ASN VAL GLU GLY GLN ASP MET LEU SEQRES 17 A 258 TYR GLN SER LEU LYS LEU THR ASN GLY ILE TRP ILE LEU SEQRES 18 A 258 ALA GLU LEU ARG ILE GLN PRO GLY ASN PRO ASN TYR THR SEQRES 19 A 258 LEU SER LEU LYS CYS ARG ALA PRO GLU VAL SER GLN TYR SEQRES 20 A 258 ILE TYR GLN VAL TYR ASP SER ILE LEU LYS ASN SEQRES 1 P 16 ASP ASP GLY LEU ASP GLU ALA PHE SER ARG LEU ALA GLN SEQRES 2 P 16 SER ARG THR SEQRES 1 S 3 ALA ALA PHE FORMUL 4 HOH *144(H2 O) HELIX 1 1 PRO A 716 ALA A 720 5 5 HELIX 2 2 PRO A 821 PHE A 826 5 6 HELIX 3 3 GLU A 833 ILE A 844 1 12 HELIX 4 4 PRO A 845 GLU A 849 5 5 HELIX 5 5 ASN A 860 ASN A 871 1 12 HELIX 6 6 ALA A 920 GLU A 922 5 3 HELIX 7 7 VAL A 923 ASN A 937 1 15 HELIX 8 8 LEU P 4 THR P 16 1 13 SHEET 1 A 5 ALA A 712 LEU A 715 0 SHEET 2 A 5 LEU A 723 ARG A 732 -1 O GLY A 727 N ALA A 712 SHEET 3 A 5 HIS A 735 ASN A 744 -1 O THR A 743 N GLU A 724 SHEET 4 A 5 SER A 781 ASN A 789 -1 O VAL A 784 N MET A 740 SHEET 5 A 5 ILE A 765 PRO A 766 -1 N ILE A 765 O ASN A 789 SHEET 1 B 3 ALA A 754 PHE A 757 0 SHEET 2 B 3 ASN A 802 LYS A 808 -1 O ALA A 806 N GLN A 756 SHEET 3 B 3 VAL A 813 LEU A 819 -1 O PHE A 816 N VAL A 805 SHEET 1 C 5 LEU A 850 ILE A 854 0 SHEET 2 C 5 TYR A 912 CYS A 918 -1 O LEU A 916 N LEU A 850 SHEET 3 C 5 TRP A 898 ILE A 905 -1 N ARG A 904 O THR A 913 SHEET 4 C 5 GLN A 884 LYS A 892 -1 N LEU A 887 O LEU A 903 SHEET 5 C 5 TYR A 874 VAL A 881 -1 N ARG A 879 O MET A 886 CISPEP 1 GLU A 798 PRO A 799 0 -6.43 CRYST1 37.750 36.313 98.982 90.00 92.91 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026490 0.000000 0.001340 0.00000 SCALE2 0.000000 0.027540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010120 0.00000