PDB Short entry for 2G73 HEADER ISOMERASE 27-FEB-06 2G73 TITLE Y104F MUTANT TYPE 1 IPP ISOMERASE COMPLEX WITH EIPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIMETHYLALLYL DIPHOSPHATE ISOMERASE, IPP ISOMERASE, COMPND 5 ISOPENTENYL PYROPHOSPHATE ISOMERASE, IPP:DMAPP ISOMERASE; COMPND 6 EC: 5.3.3.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DE RUYCK,J.WOUTERS REVDAT 7 25-OCT-23 2G73 1 REMARK REVDAT 6 10-NOV-21 2G73 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2G73 1 REMARK REVDAT 4 09-JUN-09 2G73 1 REVDAT REVDAT 3 24-FEB-09 2G73 1 VERSN REVDAT 2 02-DEC-08 2G73 1 JRNL REVDAT 1 18-APR-06 2G73 0 JRNL AUTH J.DE RUYCK,V.DURISOTTI,Y.OUDJAMA,J.WOUTERS JRNL TITL STRUCTURAL ROLE FOR TYR-104 IN ESCHERICHIA COLI JRNL TITL 2 ISOPENTENYL-DIPHOSPHATE ISOMERASE: SITE-DIRECTED JRNL TITL 3 MUTAGENESIS, ENZYMOLOGY, AND PROTEIN CRYSTALLOGRAPHY. JRNL REF J.BIOL.CHEM. V. 281 17864 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16617181 JRNL DOI 10.1074/JBC.M601851200 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.245 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.213 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 0.100 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3196 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 29017 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.229 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.197 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 0.100 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2785 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 25339 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2819 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2969.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 2 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 12001 REMARK 3 NUMBER OF RESTRAINTS : 11947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 ANGLE DISTANCES (A) : 0.023 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.027 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.029 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.032 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.129 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.073 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : MARFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: PDB ENTRY 1HX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MME, MANGANESE AND MAGNESIUM REMARK 280 CHLORIDE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.46750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.97750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.97750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.46750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.73850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 THR A 3 REMARK 465 GLN A 180 REMARK 465 LEU A 181 REMARK 465 LYS A 182 REMARK 465 LEU A 183 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 116 C12 EIP B 186 1.60 REMARK 500 OE1 GLU B 116 C12 EIP B 186 1.60 REMARK 500 OE1 GLU A 116 C12 EIP A 186 1.60 REMARK 500 OE1 GLU A 116 C12 EIP A 186 1.60 REMARK 500 OE1 GLU A 116 C13 EIP A 186 2.06 REMARK 500 OE1 GLU B 116 C14 EIP B 186 2.15 REMARK 500 OE1 GLU B 116 C13 EIP B 186 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 179 C THR A 179 O 0.798 REMARK 500 LEU B 183 C LEU B 183 O 0.785 REMARK 500 LEU B 183 C LEU B 183 OXT 0.788 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 172 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 THR A 179 CA - C - O ANGL. DEV. = -20.7 DEGREES REMARK 500 LEU B 183 CA - C - O ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -169.74 -75.38 REMARK 500 TYR A 99 77.28 -153.54 REMARK 500 THR B 26 -154.57 -134.89 REMARK 500 ASP B 28 45.85 -142.96 REMARK 500 TYR B 99 77.16 -170.40 REMARK 500 PRO B 109 -18.75 -49.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 185 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 O REMARK 620 2 GLU A 87 OE2 97.7 REMARK 620 3 EIP A 186 O1 99.7 95.4 REMARK 620 4 EIP A 186 O1 104.0 89.3 7.0 REMARK 620 5 EIP A 186 O7 89.5 169.0 75.1 80.9 REMARK 620 6 EIP A 186 O7 93.0 168.9 79.9 85.3 6.5 REMARK 620 7 HOH A 201 O 86.3 86.9 173.2 169.4 102.0 96.7 REMARK 620 8 HOH A 202 O 163.4 80.5 96.9 92.5 94.9 90.0 77.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 114 OE1 REMARK 620 2 GLU A 114 OE2 60.9 REMARK 620 3 GLU A 116 OE2 79.9 76.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 185 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 67 O REMARK 620 2 GLU B 87 OE2 96.0 REMARK 620 3 EIP B 186 O7 90.1 168.3 REMARK 620 4 EIP B 186 O7 89.1 174.5 12.0 REMARK 620 5 EIP B 186 O1 87.4 100.1 70.2 82.1 REMARK 620 6 EIP B 186 O1 108.5 90.5 78.1 89.8 22.3 REMARK 620 7 HOH B 203 O 85.2 89.3 101.1 89.1 168.6 166.2 REMARK 620 8 HOH B 204 O 166.9 82.9 93.4 91.7 105.8 84.7 81.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 114 OE1 REMARK 620 2 GLU B 114 OE2 54.9 REMARK 620 3 GLU B 116 OE2 80.0 67.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIP A 186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EIP B 186 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HX3 RELATED DB: PDB REMARK 900 WT PROTEIN (METAL BOUND) REMARK 900 RELATED ID: 1NFZ RELATED DB: PDB REMARK 900 WT PROTEIN COMPLEX WITH EIPP REMARK 900 RELATED ID: 2G74 RELATED DB: PDB REMARK 900 Y104F MUTANT DBREF 2G73 A 1 182 UNP Q46822 IDI_ECOLI 1 182 DBREF 2G73 B 1 182 UNP Q46822 IDI_ECOLI 1 182 SEQADV 2G73 PHE A 104 UNP Q46822 TYR 104 ENGINEERED MUTATION SEQADV 2G73 LEU A 183 UNP Q46822 EXPRESSION TAG SEQADV 2G73 PHE B 104 UNP Q46822 TYR 104 ENGINEERED MUTATION SEQADV 2G73 LEU B 183 UNP Q46822 EXPRESSION TAG SEQRES 1 A 183 MET GLN THR GLU HIS VAL ILE LEU LEU ASN ALA GLN GLY SEQRES 2 A 183 VAL PRO THR GLY THR LEU GLU LYS TYR ALA ALA HIS THR SEQRES 3 A 183 ALA ASP THR ARG LEU HIS LEU ALA PHE SER SER TRP LEU SEQRES 4 A 183 PHE ASN ALA LYS GLY GLN LEU LEU VAL THR ARG ARG ALA SEQRES 5 A 183 LEU SER LYS LYS ALA TRP PRO GLY VAL TRP THR ASN SER SEQRES 6 A 183 VAL CYS GLY HIS PRO GLN LEU GLY GLU SER ASN GLU ASP SEQRES 7 A 183 ALA VAL ILE ARG ARG CYS ARG TYR GLU LEU GLY VAL GLU SEQRES 8 A 183 ILE THR PRO PRO GLU SER ILE TYR PRO ASP PHE ARG PHE SEQRES 9 A 183 ARG ALA THR ASP PRO SER GLY ILE VAL GLU ASN GLU VAL SEQRES 10 A 183 CYS PRO VAL PHE ALA ALA ARG THR THR SER ALA LEU GLN SEQRES 11 A 183 ILE ASN ASP ASP GLU VAL MET ASP TYR GLN TRP CYS ASP SEQRES 12 A 183 LEU ALA ASP VAL LEU HIS GLY ILE ASP ALA THR PRO TRP SEQRES 13 A 183 ALA PHE SER PRO TRP MET VAL MET GLN ALA THR ASN ARG SEQRES 14 A 183 GLU ALA ARG LYS ARG LEU SER ALA PHE THR GLN LEU LYS SEQRES 15 A 183 LEU SEQRES 1 B 183 MET GLN THR GLU HIS VAL ILE LEU LEU ASN ALA GLN GLY SEQRES 2 B 183 VAL PRO THR GLY THR LEU GLU LYS TYR ALA ALA HIS THR SEQRES 3 B 183 ALA ASP THR ARG LEU HIS LEU ALA PHE SER SER TRP LEU SEQRES 4 B 183 PHE ASN ALA LYS GLY GLN LEU LEU VAL THR ARG ARG ALA SEQRES 5 B 183 LEU SER LYS LYS ALA TRP PRO GLY VAL TRP THR ASN SER SEQRES 6 B 183 VAL CYS GLY HIS PRO GLN LEU GLY GLU SER ASN GLU ASP SEQRES 7 B 183 ALA VAL ILE ARG ARG CYS ARG TYR GLU LEU GLY VAL GLU SEQRES 8 B 183 ILE THR PRO PRO GLU SER ILE TYR PRO ASP PHE ARG PHE SEQRES 9 B 183 ARG ALA THR ASP PRO SER GLY ILE VAL GLU ASN GLU VAL SEQRES 10 B 183 CYS PRO VAL PHE ALA ALA ARG THR THR SER ALA LEU GLN SEQRES 11 B 183 ILE ASN ASP ASP GLU VAL MET ASP TYR GLN TRP CYS ASP SEQRES 12 B 183 LEU ALA ASP VAL LEU HIS GLY ILE ASP ALA THR PRO TRP SEQRES 13 B 183 ALA PHE SER PRO TRP MET VAL MET GLN ALA THR ASN ARG SEQRES 14 B 183 GLU ALA ARG LYS ARG LEU SER ALA PHE THR GLN LEU LYS SEQRES 15 B 183 LEU HET MN A 184 1 HET MG A 185 1 HET EIP A 186 30 HET MN B 184 1 HET MG B 185 1 HET EIP B 186 30 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM EIP 4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE FORMUL 3 MN 2(MN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 EIP 2(C5 H14 O8 P2) FORMUL 9 HOH *115(H2 O) HELIX 1 1 LYS A 21 HIS A 25 1 5 HELIX 2 2 SER A 75 GLY A 89 1 15 HELIX 3 3 ASP A 143 THR A 154 1 12 HELIX 4 4 PRO A 155 PHE A 158 5 4 HELIX 5 5 SER A 159 THR A 167 1 9 HELIX 6 6 ASN A 168 ALA A 177 1 10 HELIX 7 7 LYS B 21 HIS B 25 1 5 HELIX 8 8 SER B 75 GLY B 89 1 15 HELIX 9 9 ASP B 143 THR B 154 1 12 HELIX 10 10 PRO B 155 PHE B 158 5 4 HELIX 11 11 SER B 159 THR B 167 1 9 HELIX 12 12 ASN B 168 PHE B 178 1 11 SHEET 1 A 2 HIS A 5 LEU A 9 0 SHEET 2 A 2 PRO A 15 GLU A 20 -1 O LEU A 19 N VAL A 6 SHEET 1 B 3 HIS A 32 LEU A 33 0 SHEET 2 B 3 VAL A 113 VAL A 117 1 O VAL A 117 N HIS A 32 SHEET 3 B 3 ARG A 103 THR A 107 -1 N PHE A 104 O GLU A 116 SHEET 1 C 4 VAL A 66 GLY A 68 0 SHEET 2 C 4 PHE A 35 PHE A 40 -1 N PHE A 35 O GLY A 68 SHEET 3 C 4 VAL A 120 ARG A 124 1 O PHE A 121 N SER A 36 SHEET 4 C 4 GLU A 96 TYR A 99 -1 N GLU A 96 O ALA A 122 SHEET 1 D 3 TRP A 62 THR A 63 0 SHEET 2 D 3 LEU A 46 ARG A 51 -1 N THR A 49 O THR A 63 SHEET 3 D 3 VAL A 136 CYS A 142 -1 O ASP A 138 N ARG A 50 SHEET 1 E 2 HIS B 5 LEU B 9 0 SHEET 2 E 2 PRO B 15 GLU B 20 -1 O THR B 16 N LEU B 8 SHEET 1 F 3 HIS B 32 LEU B 33 0 SHEET 2 F 3 VAL B 113 VAL B 117 1 O VAL B 117 N HIS B 32 SHEET 3 F 3 ARG B 103 THR B 107 -1 N PHE B 104 O GLU B 116 SHEET 1 G 4 VAL B 66 GLY B 68 0 SHEET 2 G 4 PHE B 35 PHE B 40 -1 N SER B 37 O VAL B 66 SHEET 3 G 4 VAL B 120 ARG B 124 1 O PHE B 121 N SER B 36 SHEET 4 G 4 GLU B 96 TYR B 99 -1 N GLU B 96 O ALA B 122 SHEET 1 H 3 TRP B 62 THR B 63 0 SHEET 2 H 3 LEU B 46 ARG B 51 -1 N THR B 49 O THR B 63 SHEET 3 H 3 VAL B 136 CYS B 142 -1 O GLN B 140 N VAL B 48 LINK O CYS A 67 MG MG A 185 1555 1555 2.16 LINK OE2 GLU A 87 MG MG A 185 1555 1555 1.95 LINK OE1 GLU A 114 MN MN A 184 1555 1555 2.10 LINK OE2 GLU A 114 MN MN A 184 1555 1555 2.23 LINK OE2 GLU A 116 MN MN A 184 1555 1555 2.20 LINK MG MG A 185 O1 AEIP A 186 1555 1555 1.90 LINK MG MG A 185 O1 BEIP A 186 1555 1555 2.21 LINK MG MG A 185 O7 AEIP A 186 1555 1555 1.87 LINK MG MG A 185 O7 BEIP A 186 1555 1555 2.06 LINK MG MG A 185 O HOH A 201 1555 1555 1.85 LINK MG MG A 185 O HOH A 202 1555 1555 1.85 LINK O CYS B 67 MG MG B 185 1555 1555 2.24 LINK OE2 GLU B 87 MG MG B 185 1555 1555 2.04 LINK OE1 GLU B 114 MN MN B 184 1555 1555 2.41 LINK OE2 GLU B 114 MN MN B 184 1555 1555 2.25 LINK OE2 GLU B 116 MN MN B 184 1555 1555 2.40 LINK MG MG B 185 O7 AEIP B 186 1555 1555 2.01 LINK MG MG B 185 O7 BEIP B 186 1555 1555 1.84 LINK MG MG B 185 O1 AEIP B 186 1555 1555 2.14 LINK MG MG B 185 O1 BEIP B 186 1555 1555 2.01 LINK MG MG B 185 O HOH B 203 1555 1555 2.10 LINK MG MG B 185 O HOH B 204 1555 1555 2.18 SITE 1 AC1 5 HIS A 25 HIS A 32 HIS A 69 GLU A 114 SITE 2 AC1 5 GLU A 116 SITE 1 AC2 5 HIS B 25 HIS B 32 HIS B 69 GLU B 114 SITE 2 AC2 5 GLU B 116 SITE 1 AC3 5 CYS A 67 GLU A 87 EIP A 186 HOH A 201 SITE 2 AC3 5 HOH A 202 SITE 1 AC4 5 CYS B 67 GLU B 87 EIP B 186 HOH B 203 SITE 2 AC4 5 HOH B 204 SITE 1 AC5 21 LYS A 21 ALA A 34 PHE A 35 ARG A 51 SITE 2 AC5 21 LYS A 55 CYS A 67 GLY A 68 HIS A 69 SITE 3 AC5 21 ARG A 83 GLU A 87 PHE A 104 GLU A 114 SITE 4 AC5 21 GLU A 116 CYS A 118 TRP A 161 MG A 185 SITE 5 AC5 21 HOH A 201 HOH A 202 HOH A 205 HOH A 210 SITE 6 AC5 21 HOH A 218 SITE 1 AC6 18 LYS B 21 ARG B 51 LYS B 55 CYS B 67 SITE 2 AC6 18 GLY B 68 HIS B 69 ARG B 83 GLU B 87 SITE 3 AC6 18 PHE B 104 GLU B 114 GLU B 116 CYS B 118 SITE 4 AC6 18 TRP B 161 MG B 185 HOH B 203 HOH B 204 SITE 5 AC6 18 HOH B 211 HOH B1292 CRYST1 68.935 71.477 91.955 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010875 0.00000