PDB Short entry for 2G9H HEADER IMMUNE SYSTEM 06-MAR-06 2G9H TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN I (SEI) IN COMPLEX TITLE 2 WITH A HUMAN MHC CLASS II MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MHC CLASS I ANTIGEN DRB1*1, DR-1, DR1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEMAGGLUTININ; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: PEPTIDE, 306-318 RESIDUES; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: EXTRACELLULAR ENTEROTOXIN TYPE I; COMPND 18 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HLA-DRB1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: THIS SEQUENCE OCCURS NUTURALLY IN INFLUENZA VIRUS; SOURCE 24 MOL_ID: 4; SOURCE 25 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 26 ORGANISM_TAXID: 1280; SOURCE 27 STRAIN: FC30 CLINICAL ISOLATE KEYWDS IMMUNE SYSTEM, SUPERANTIGEN, ZN, HLA CLASII MOLECULE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.FERNANDEZ,R.GUAN,E.L.MALCHIODI,R.A.MARIUZZA REVDAT 6 30-AUG-23 2G9H 1 REMARK LINK REVDAT 5 18-OCT-17 2G9H 1 REMARK REVDAT 4 13-JUL-11 2G9H 1 VERSN REVDAT 3 24-FEB-09 2G9H 1 VERSN REVDAT 2 15-AUG-06 2G9H 1 JRNL REVDAT 1 11-JUL-06 2G9H 0 JRNL AUTH M.M.FERNANDEZ,R.GUAN,C.P.SWAMINATHAN,E.L.MALCHIODI, JRNL AUTH 2 R.A.MARIUZZA JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN I (SEI) IN JRNL TITL 2 COMPLEX WITH A HUMAN MAJOR HISTOCOMPATIBILITY COMPLEX CLASS JRNL TITL 3 II MOLECULE. JRNL REF J.BIOL.CHEM. V. 281 25356 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16829512 JRNL DOI 10.1074/JBC.M603969200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.17000 REMARK 3 B22 (A**2) : 2.30000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5030 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6816 ; 1.451 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 6.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;33.950 ;24.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;17.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 721 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3852 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2094 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3333 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 423 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.162 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.361 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3021 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4808 ; 1.113 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2276 ; 1.727 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2008 ; 2.716 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5520 -14.8737 10.4486 REMARK 3 T TENSOR REMARK 3 T11: -0.1477 T22: -0.0971 REMARK 3 T33: -0.1212 T12: -0.0003 REMARK 3 T13: -0.0070 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.1971 L22: 1.4218 REMARK 3 L33: 1.9878 L12: -0.4213 REMARK 3 L13: 0.1318 L23: -0.3706 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: -0.0835 S13: -0.2099 REMARK 3 S21: -0.0212 S22: -0.0272 S23: 0.1391 REMARK 3 S31: 0.0611 S32: -0.1405 S33: -0.0491 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4903 -1.5703 21.2711 REMARK 3 T TENSOR REMARK 3 T11: -0.0874 T22: -0.0376 REMARK 3 T33: -0.1137 T12: 0.0660 REMARK 3 T13: 0.0423 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7545 L22: 0.2920 REMARK 3 L33: 2.6296 L12: -0.0806 REMARK 3 L13: 0.5719 L23: -0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.0977 S13: 0.0430 REMARK 3 S21: 0.0756 S22: 0.0042 S23: 0.0182 REMARK 3 S31: -0.4426 S32: -0.1936 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 306 C 318 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1564 -0.3736 -0.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: -0.0085 REMARK 3 T33: -0.1154 T12: 0.1380 REMARK 3 T13: -0.0519 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 8.2708 L22: 2.8083 REMARK 3 L33: 17.8601 L12: 1.7588 REMARK 3 L13: -10.5340 L23: -4.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.8914 S13: 0.1418 REMARK 3 S21: -0.5705 S22: 0.1413 S23: 0.3130 REMARK 3 S31: 0.3470 S32: -0.7804 S33: -0.0768 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 216 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8279 12.1085 10.9336 REMARK 3 T TENSOR REMARK 3 T11: -0.1097 T22: -0.2644 REMARK 3 T33: -0.0769 T12: 0.0782 REMARK 3 T13: -0.0490 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.4126 L22: 3.1262 REMARK 3 L33: 2.5390 L12: -1.4095 REMARK 3 L13: -0.7950 L23: 1.3935 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 0.2987 S13: -0.3326 REMARK 3 S21: -0.0748 S22: -0.0284 S23: 0.2829 REMARK 3 S31: 0.2034 S32: 0.1793 S33: -0.0699 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): 63.7888 -21.6473 36.8797 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: 0.0010 REMARK 3 T33: 0.0006 T12: 0.0000 REMARK 3 T13: 0.0026 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 5.1948 L22: 10.6020 REMARK 3 L33: 36.0902 L12: 2.4734 REMARK 3 L13: 7.2872 L23: 19.0834 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: -0.6456 S13: -0.1439 REMARK 3 S21: 0.6990 S22: 0.0571 S23: -1.6517 REMARK 3 S31: 0.4564 S32: -0.3359 S33: -0.3163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.050 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.93 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SXT AND 1DHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% DIOXANE, 1.2 MM (NH4)2SO4 AND 100 REMARK 280 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.19750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.96650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.19750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.96650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 927 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 182 REMARK 465 GLN D 1 REMARK 465 GLY D 2 REMARK 465 ASP D 3 REMARK 465 SER D 217 REMARK 465 ASN D 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 876 O HOH A 960 1.68 REMARK 500 O HOH A 926 O HOH A 962 1.74 REMARK 500 O HOH C 346 O HOH D 929 1.95 REMARK 500 O HOH B 293 O HOH B 321 2.07 REMARK 500 O HIS B 112 O HOH B 322 2.09 REMARK 500 O HOH D 922 O HOH D 958 2.11 REMARK 500 O HOH A 960 O HOH B 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 90 -74.68 -124.14 REMARK 500 LEU B 109 44.24 -109.62 REMARK 500 GLN B 110 -123.34 50.10 REMARK 500 ASP D 20 89.99 -150.37 REMARK 500 ASN D 50 69.34 -164.29 REMARK 500 CYS D 73 -15.20 81.30 REMARK 500 ASN D 102 19.35 51.85 REMARK 500 TYR D 153 26.48 -145.89 REMARK 500 SER D 190 -61.07 -97.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 81 ND1 REMARK 620 2 HIS D 169 ND1 117.3 REMARK 620 3 HIS D 207 NE2 111.9 112.3 REMARK 620 4 ASP D 209 OD2 88.7 90.0 135.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 702 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS CLAIM THAT THESE REPRESENT NATURAL REMARK 999 SEQUENCE VARIANTIONS IN THE STRAIN USED. DBREF 2G9H A 1 182 UNP P01903 2DRA_HUMAN 26 207 DBREF 2G9H B 1 190 UNP P04229 2B11_HUMAN 30 219 DBREF 2G9H C 306 318 UNP P04664 HEMA_IAEN6 306 318 DBREF 2G9H D 1 218 UNP O85383 O85383_STAAU 25 242 SEQADV 2G9H LEU D 24 UNP O85383 VAL 48 SEE REMARK 999 SEQADV 2G9H ILE D 25 UNP O85383 THR 49 SEE REMARK 999 SEQADV 2G9H SER D 31 UNP O85383 ILE 55 SEE REMARK 999 SEQADV 2G9H ILE D 41 UNP O85383 THR 65 SEE REMARK 999 SEQADV 2G9H SER D 114 UNP O85383 ALA 138 SEE REMARK 999 SEQADV 2G9H SER D 144 UNP O85383 ASN 168 SEE REMARK 999 SEQADV 2G9H LYS D 163 UNP O85383 ASN 187 SEE REMARK 999 SEQADV 2G9H ASP D 172 UNP O85383 ASN 196 SEE REMARK 999 SEQADV 2G9H VAL D 187 UNP O85383 LEU 211 SEE REMARK 999 SEQRES 1 A 182 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 182 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 182 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 182 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 182 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 182 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 182 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 182 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 182 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 182 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 182 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 182 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 182 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 182 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 1 B 190 GLY ASP THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE SEQRES 2 B 190 GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU SEQRES 3 B 190 LEU GLU ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG SEQRES 4 B 190 PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU SEQRES 5 B 190 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS SEQRES 6 B 190 ASP LEU LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR SEQRES 7 B 190 CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL SEQRES 8 B 190 GLN ARG ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER SEQRES 9 B 190 LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 10 B 190 SER VAL SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG SEQRES 11 B 190 TRP PHE ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SEQRES 12 B 190 SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN SEQRES 13 B 190 THR LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU SEQRES 14 B 190 VAL TYR THR CYS GLN VAL GLU HIS PRO SER VAL THR SER SEQRES 15 B 190 PRO LEU THR VAL GLU TRP ARG ALA SEQRES 1 C 13 PRO LYS TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR SEQRES 1 D 218 GLN GLY ASP ILE GLY VAL GLY ASN LEU ARG ASN PHE TYR SEQRES 2 D 218 THR LYS HIS ASP TYR ILE ASP LEU LYS GLY LEU ILE ASP SEQRES 3 D 218 LYS ASN LEU PRO SER ALA ASN GLN LEU GLU PHE SER THR SEQRES 4 D 218 GLY ILE ASN ASP LEU ILE SER GLU SER ASN ASN TRP ASP SEQRES 5 D 218 GLU ILE SER LYS PHE LYS GLY LYS LYS LEU ASP ILE PHE SEQRES 6 D 218 GLY ILE ASP TYR ASN GLY PRO CYS LYS SER LYS TYR MET SEQRES 7 D 218 TYR GLY GLY ALA THR LEU SER GLY GLN TYR LEU ASN SER SEQRES 8 D 218 ALA ARG LYS ILE PRO ILE ASN LEU TRP VAL ASN GLY LYS SEQRES 9 D 218 HIS LYS THR ILE SER THR ASP LYS ILE SER THR ASN LYS SEQRES 10 D 218 LYS LEU VAL THR ALA GLN GLU ILE ASP VAL LYS LEU ARG SEQRES 11 D 218 ARG TYR LEU GLN GLU GLU TYR ASN ILE TYR GLY HIS ASN SEQRES 12 D 218 SER THR GLY LYS GLY LYS GLU TYR GLY TYR LYS SER LYS SEQRES 13 D 218 PHE TYR SER GLY PHE ASN LYS GLY LYS VAL LEU PHE HIS SEQRES 14 D 218 LEU ASN ASP GLU LYS SER PHE SER TYR ASP LEU PHE TYR SEQRES 15 D 218 THR GLY ASP GLY VAL PRO VAL SER PHE LEU LYS ILE TYR SEQRES 16 D 218 GLU ASP ASN LYS ILE ILE GLU SER GLU LYS PHE HIS LEU SEQRES 17 D 218 ASP VAL GLU ILE SER TYR VAL ASP SER ASN HET SO4 A 802 5 HET SO4 A 803 5 HET EPE A 601 15 HET DIO A 701 6 HET DIO A 702 6 HET SO4 C 804 5 HET ZN D 501 1 HET SO4 D 801 5 HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM ZN ZINC ION HETSYN EPE HEPES FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 DIO 2(C4 H8 O2) FORMUL 11 ZN ZN 2+ FORMUL 13 HOH *460(H2 O) HELIX 1 1 LEU A 45 PHE A 51 5 7 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 ASN B 62 1 9 HELIX 5 5 GLN B 64 TYR B 78 1 15 HELIX 6 6 TYR B 78 GLU B 87 1 10 HELIX 7 7 SER B 88 THR B 90 5 3 HELIX 8 8 ILE D 4 LYS D 15 1 12 HELIX 9 9 ASN D 50 SER D 55 1 6 HELIX 10 10 ALA D 122 ASN D 138 1 17 HELIX 11 11 GLY D 148 GLY D 152 5 5 HELIX 12 12 VAL D 187 LEU D 192 1 6 HELIX 13 13 LYS D 193 GLU D 196 5 4 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N ASP A 35 O GLU A 40 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N LEU A 14 O SER A 19 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O CYS B 15 N ILE A 7 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O ILE B 31 N GLN B 10 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O PHE B 40 N GLU B 28 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LYS A 147 N ILE A 109 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LYS A 147 N ILE A 109 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 GLU A 179 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 LYS B 98 PRO B 103 0 SHEET 2 E 4 ASN B 113 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 E 4 PHE B 155 THR B 163 -1 O THR B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 LYS B 98 PRO B 103 0 SHEET 2 F 4 ASN B 113 PHE B 122 -1 O VAL B 116 N TYR B 102 SHEET 3 F 4 PHE B 155 THR B 163 -1 O THR B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N TRP B 131 O GLU B 138 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O TRP B 188 N TYR B 171 SHEET 1 H 3 ILE D 19 ILE D 25 0 SHEET 2 H 3 LYS D 61 GLY D 66 -1 O GLY D 66 N ILE D 19 SHEET 3 H 3 ALA D 82 LEU D 84 -1 O THR D 83 N ASP D 63 SHEET 1 I 3 GLN D 34 SER D 38 0 SHEET 2 I 3 ASP D 43 GLU D 47 -1 O LEU D 44 N PHE D 37 SHEET 3 I 3 LYS D 76 TYR D 79 1 O MET D 78 N GLU D 47 SHEET 1 J 2 TYR D 88 LYS D 94 0 SHEET 2 J 2 SER D 114 LYS D 117 -1 O ASN D 116 N LEU D 89 SHEET 1 K 5 LYS D 104 ILE D 108 0 SHEET 2 K 5 ILE D 97 VAL D 101 -1 N VAL D 101 O LYS D 104 SHEET 3 K 5 PHE D 206 SER D 213 1 O VAL D 210 N ASN D 98 SHEET 4 K 5 LYS D 163 LEU D 170 -1 N HIS D 169 O HIS D 207 SHEET 5 K 5 PHE D 176 ASP D 179 -1 O PHE D 176 N PHE D 168 SHEET 1 L 2 LEU D 119 THR D 121 0 SHEET 2 L 2 ILE D 200 GLU D 202 -1 O ILE D 201 N VAL D 120 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.05 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.08 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.01 LINK ND1 HIS B 81 ZN ZN D 501 1555 1555 2.25 LINK ND1 HIS D 169 ZN ZN D 501 1555 1555 2.15 LINK NE2 HIS D 207 ZN ZN D 501 1555 1555 1.84 LINK OD2 ASP D 209 ZN ZN D 501 1555 1555 1.97 CISPEP 1 ASN A 15 PRO A 16 0 -0.28 CISPEP 2 THR A 113 PRO A 114 0 -1.59 CISPEP 3 TYR B 123 PRO B 124 0 0.16 SITE 1 AC1 4 HIS B 81 HIS D 169 HIS D 207 ASP D 209 SITE 1 AC2 4 LYS D 174 SER D 175 HOH D 873 HOH D 912 SITE 1 AC3 3 ASN A 118 TRP A 168 HOH A 805 SITE 1 AC4 4 ARG A 123 ASN A 124 LYS A 126 HOH A 952 SITE 1 AC5 4 SER A 53 PRO C 306 LYS C 307 HOH C 330 SITE 1 AC6 10 PRO A 96 VAL A 97 GLU A 98 HOH A 810 SITE 2 AC6 10 HOH A 944 TYR B 102 HOH B 279 ASN D 28 SITE 3 AC6 10 LEU D 29 TRP D 51 SITE 1 AC7 7 ASN A 84 TRP A 168 ASP A 171 HOH A 826 SITE 2 AC7 7 THR B 3 ARG B 4 ARG B 6 SITE 1 AC8 4 LYS A 111 ARG A 140 HOH A 920 HOH A 942 CRYST1 150.395 99.933 72.917 90.00 92.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006649 0.000000 0.000232 0.00000 SCALE2 0.000000 0.010007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013723 0.00000