PDB Short entry for 2GIG HEADER HYDROLASE/DNA 28-MAR-06 2GIG TITLE ALTERATION OF SEQUENCE SPECIFICITY OF THE TYPE II RESTRICTION TITLE 2 ENDONUCLEASE HINCII THROUGH AN INDIRECT READOUT MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3'; COMPND 3 CHAIN: E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYPE II RESTRICTION ENZYME HINCII; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: ENDONUCLEASE HINCII, R.HINCII; COMPND 9 EC: 3.1.21.4; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 5 ORGANISM_TAXID: 727; SOURCE 6 GENE: HINCIIR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ER2393; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCCR101HINCII.R KEYWDS PROTEIN DNA COMPLEX, INDIRECT READOUT, DNA INTERCALATION, KEYWDS 2 ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HORTON,H.K.JOSHI,C.ETZKORN,L.CHATWELL,J.BITINAITE REVDAT 8 30-AUG-23 2GIG 1 REMARK REVDAT 7 20-OCT-21 2GIG 1 REMARK SEQADV LINK REVDAT 6 22-NOV-17 2GIG 1 REMARK REVDAT 5 16-APR-14 2GIG 1 REMARK VERSN REVDAT 4 24-FEB-09 2GIG 1 VERSN REVDAT 3 27-MAR-07 2GIG 1 TITLE COMPND SOURCE DBREF REVDAT 3 2 1 SEQADV REVDAT 2 29-AUG-06 2GIG 1 JRNL REVDAT 1 18-JUL-06 2GIG 0 JRNL AUTH H.K.JOSHI,C.ETZKORN,L.CHATWELL,J.BITINAITE,N.C.HORTON JRNL TITL ALTERATION OF SEQUENCE SPECIFICITY OF THE TYPE II JRNL TITL 2 RESTRICTION ENDONUCLEASE HINCII THROUGH AN INDIRECT READOUT JRNL TITL 3 MECHANISM. JRNL REF J.BIOL.CHEM. V. 281 23852 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16675462 JRNL DOI 10.1074/JBC.M512339200 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 44677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2348 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3954 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.680 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : 180 FRAMES, 1 DEGREE EACH, 30 REMARK 200 SEC PER FRAME REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1TW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 0.15 M NACL, 0.1 M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 LEU A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 258 REMARK 465 LYS B 21 REMARK 465 ARG B 22 REMARK 465 PRO B 23 REMARK 465 LYS B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 LEU B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 HIS B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 GLY B 34 REMARK 465 GLU B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 SER A 50 OG REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 SER B 50 OG REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 66 CD CE NZ REMARK 470 GLU B 74 CD OE1 OE2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 GLU B 107 CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 GLN B 109 CD OE1 NE2 REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 LYS B 135 CD CE NZ REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LEU B 175 CG CD1 CD2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 55 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 110.77 49.76 REMARK 500 SER A 82 120.53 -172.28 REMARK 500 GLU A 160 77.26 -105.80 REMARK 500 ILE B 16 107.89 -57.92 REMARK 500 SER B 82 113.06 174.00 REMARK 500 GLN B 109 -37.43 -38.00 REMARK 500 SER B 136 129.99 61.74 REMARK 500 ASP B 162 35.83 -147.97 REMARK 500 ASN B 176 83.88 -154.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG F 8 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG F 8 OP1 REMARK 620 2 DA F 9 OP2 91.9 REMARK 620 3 ASP A 114 OD1 96.4 169.9 REMARK 620 4 ASP A 127 OD1 83.4 108.8 77.9 REMARK 620 5 VAL A 128 O 158.2 83.9 90.4 77.8 REMARK 620 6 HOH A 568 O 74.9 100.1 76.6 144.2 126.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG F 8 OP2 REMARK 620 2 HOH F 21 O 130.2 REMARK 620 3 ASP A 127 OD2 79.9 90.2 REMARK 620 4 ILE A 142 O 123.8 105.5 94.6 REMARK 620 5 HOH A 571 O 89.3 102.4 167.0 85.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AUD RELATED DB: PDB REMARK 900 UNLIGANDED HINCII REMARK 900 RELATED ID: 1XHV RELATED DB: PDB REMARK 900 HINCII BOUND TO CLEAVED COGNATE DNA AND MN2+ REMARK 900 RELATED ID: 1HXU RELATED DB: PDB REMARK 900 HINCII BOUND TO CLEAVED COGNATE DNA AND MG2+ REMARK 900 RELATED ID: 1TW8 RELATED DB: PDB REMARK 900 HINCII BOUND TO COGNATE DNA AND CA2+ REMARK 900 RELATED ID: 1KC6 RELATED DB: PDB REMARK 900 WILD TYPE HINCII BOUND TO COGNATE DNA GTCGAC REMARK 900 RELATED ID: 2GIE RELATED DB: PDB REMARK 900 WILD TYPE HINCII BOUND TO COGNATE DNA GTTAAC REMARK 900 RELATED ID: 2GIH RELATED DB: PDB REMARK 900 RELATED ID: 2GII RELATED DB: PDB REMARK 900 RELATED ID: 2GIJ RELATED DB: PDB REMARK 900 RELATED ID: 1TX3 RELATED DB: PDB DBREF 2GIG A 2 258 UNP P44413 T2D2_HAEIN 2 258 DBREF 2GIG B 2 258 UNP P44413 T2D2_HAEIN 2 258 DBREF 2GIG E 1 14 PDB 2GIG 2GIG 1 14 DBREF 2GIG F 1 14 PDB 2GIG 2GIG 1 14 SEQADV 2GIG THR A 130 UNP P44413 ARG 130 CONFLICT SEQADV 2GIG PHE A 138 UNP P44413 GLN 138 ENGINEERED MUTATION SEQADV 2GIG TRP A 173 UNP P44413 SER 173 CONFLICT SEQADV 2GIG THR B 130 UNP P44413 ARG 130 CONFLICT SEQADV 2GIG PHE B 138 UNP P44413 GLN 138 ENGINEERED MUTATION SEQADV 2GIG TRP B 173 UNP P44413 SER 173 CONFLICT SEQRES 1 E 14 DG DC DC DG DG DT DC DG DA DC DC DG DG SEQRES 2 E 14 DC SEQRES 1 F 14 DG DC DC DG DG DT DC DG DA DC DC DG DG SEQRES 2 F 14 DC SEQRES 1 A 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 A 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 A 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 A 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 A 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 A 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 A 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 A 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 A 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 A 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 A 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 A 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 A 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 A 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 A 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 A 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 A 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 A 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 A 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 A 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU SEQRES 1 B 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 B 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 B 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 B 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 B 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 B 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 B 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 B 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 B 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 B 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 B 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 B 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 B 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 B 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 B 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 B 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 B 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 B 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 B 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 B 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU HET NA A 501 1 HET NA A 502 1 HETNAM NA SODIUM ION FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *463(H2 O) HELIX 1 1 ILE A 4 PRO A 6 5 3 HELIX 2 2 ILE A 7 ILE A 16 1 10 HELIX 3 3 PRO A 36 LEU A 49 1 14 HELIX 4 4 GLN A 56 LYS A 66 1 11 HELIX 5 5 GLY A 72 LEU A 79 1 8 HELIX 6 6 SER A 82 SER A 90 1 9 HELIX 7 7 GLY A 92 TRP A 99 1 8 HELIX 8 8 ALA A 145 LYS A 159 1 15 HELIX 9 9 PHE A 191 SER A 193 5 3 HELIX 10 10 GLU A 194 LEU A 198 5 5 HELIX 11 11 HIS A 211 LEU A 215 5 5 HELIX 12 12 THR A 222 VAL A 250 1 29 HELIX 13 13 LYS A 251 ILE A 257 5 7 HELIX 14 14 ILE B 4 PRO B 6 5 3 HELIX 15 15 ILE B 7 ILE B 16 1 10 HELIX 16 16 PHE B 37 LEU B 49 1 13 HELIX 17 17 GLN B 56 LYS B 66 1 11 HELIX 18 18 GLY B 72 LEU B 79 1 8 HELIX 19 19 SER B 82 SER B 90 1 9 HELIX 20 20 GLY B 92 ASN B 98 1 7 HELIX 21 21 ALA B 145 LYS B 159 1 15 HELIX 22 22 PHE B 191 SER B 193 5 3 HELIX 23 23 GLU B 194 LEU B 198 5 5 HELIX 24 24 HIS B 211 LEU B 215 5 5 HELIX 25 25 THR B 222 VAL B 250 1 29 HELIX 26 26 PHE B 253 ILE B 257 5 5 SHEET 1 A 6 LYS A 19 LYS A 21 0 SHEET 2 A 6 ASP A 179 GLU A 189 -1 O LEU A 180 N VAL A 20 SHEET 3 A 6 PHE A 164 ASN A 176 -1 N ASN A 176 O ASP A 179 SHEET 4 A 6 PHE A 122 ASN A 132 1 N LEU A 125 O ASP A 165 SHEET 5 A 6 ILE A 115 LYS A 119 -1 N ILE A 115 O LEU A 126 SHEET 6 A 6 THR A 53 LYS A 55 -1 N PHE A 54 O LEU A 116 SHEET 1 B 3 ASN A 141 SER A 144 0 SHEET 2 B 3 GLN A 207 GLN A 209 -1 O ILE A 208 N ILE A 143 SHEET 3 B 3 ILE A 200 ASN A 201 -1 N ASN A 201 O GLN A 207 SHEET 1 C 6 LYS B 19 VAL B 20 0 SHEET 2 C 6 ASP B 179 GLU B 189 -1 O LEU B 180 N VAL B 20 SHEET 3 C 6 PHE B 164 ASN B 176 -1 N TYR B 168 O ALA B 188 SHEET 4 C 6 PHE B 122 ASN B 132 1 N LYS B 129 O LEU B 169 SHEET 5 C 6 ILE B 115 LYS B 119 -1 N LEU B 117 O GLU B 124 SHEET 6 C 6 THR B 53 LYS B 55 -1 N PHE B 54 O LEU B 116 SHEET 1 D 3 ASN B 141 SER B 144 0 SHEET 2 D 3 GLN B 207 GLN B 209 -1 O ILE B 208 N ILE B 143 SHEET 3 D 3 ILE B 200 ASN B 201 -1 N ASN B 201 O GLN B 207 LINK OP1 DG F 8 NA NA A 501 1555 1555 2.20 LINK OP2 DG F 8 NA NA A 502 1555 1555 2.39 LINK OP2 DA F 9 NA NA A 501 1555 1555 2.45 LINK O HOH F 21 NA NA A 502 1555 1555 2.38 LINK OD1 ASP A 114 NA NA A 501 1555 1555 2.40 LINK OD1 ASP A 127 NA NA A 501 1555 1555 2.47 LINK OD2 ASP A 127 NA NA A 502 1555 1555 2.57 LINK O VAL A 128 NA NA A 501 1555 1555 2.33 LINK O ILE A 142 NA NA A 502 1555 1555 2.23 LINK NA NA A 501 O HOH A 568 1555 1555 2.39 LINK NA NA A 502 O HOH A 571 1555 1555 2.42 SITE 1 AC1 7 ASP A 114 ASP A 127 VAL A 128 HOH A 568 SITE 2 AC1 7 HOH A 605 DG F 8 DA F 9 SITE 1 AC2 5 ASP A 127 ILE A 142 HOH A 571 DG F 8 SITE 2 AC2 5 HOH F 21 CRYST1 50.420 90.990 67.330 90.00 104.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019833 0.000000 0.004982 0.00000 SCALE2 0.000000 0.010990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015314 0.00000