PDB Short entry for 2GQ6 HEADER RNA 20-APR-06 2GQ6 TITLE CRYSTAL STRUCTURE OF AN RNA RACEMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(0C)P*(0U)P*(0G)P*(0G)P*(0G)P*(0C)P*(0G)P*(0G))- COMPND 3 3'); COMPND 4 CHAIN: K, M; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*(0C)P*(0C)P*(0G)P*(0C)P*(0C)P*(0U)P*(0G)P*(0G))- COMPND 8 3'); COMPND 9 CHAIN: L, N; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A 'SPIEGELMER' AND OCCURS IN 5S RNA SOURCE 4 FROM THERMUS FLAVUS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THIS IS A 'SPIEGELMER' OF A SEQUENCE FROM 5S RNA FROM SOURCE 8 THERMUS FLAVUS KEYWDS DOUBLE HELIX, RACEMATE, RNA EXPDTA X-RAY DIFFRACTION NUMMDL 2 AUTHOR W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL,V.A.ERDMANN REVDAT 6 03-APR-24 2GQ6 1 REMARK REVDAT 5 14-FEB-24 2GQ6 1 REMARK LINK REVDAT 4 28-MAR-12 2GQ6 1 CRYST1 REVDAT 3 13-JUL-11 2GQ6 1 VERSN REVDAT 2 24-FEB-09 2GQ6 1 VERSN REVDAT 1 27-JUN-06 2GQ6 0 JRNL AUTH W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,L.J.DELUCAS, JRNL AUTH 2 C.BETZEL,V.A.ERDMANN JRNL TITL THE FIRST CRYSTAL STRUCTURE OF AN RNA RACEMATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 659 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16699193 JRNL DOI 10.1107/S090744490601359X REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 36127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THOUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 675 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.099 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 4.648 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.802 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NDB ENTRY AR0012 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 400, 0.1 M CACL2, 50 MM HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P -1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY RELEVANT (ALTHOUGH NOT BIOLOGICAL) RNA REMARK 300 FRAGMENT IS THE DUPLEX FORMED BY CHAINS M+N, K+L AND X+Y REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 0C K 79 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 0G L 92 O5' 0G L 92 C5' -0.064 REMARK 500 1 0G M 81 N1 0G M 81 C2 -0.058 REMARK 500 1 0G M 82 C2 0G M 82 N3 0.053 REMARK 500 1 0C N 93 C4 0C N 93 C5 -0.049 REMARK 500 2 0G M 81 N1 0G M 81 C2 -0.058 REMARK 500 2 0G M 82 C2 0G M 82 N3 0.053 REMARK 500 2 0C N 93 C4 0C N 93 C5 -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 0U K 80 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 0C K 84 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 1 0C K 84 O4' - C4' - C3' ANGL. DEV. = -6.8 DEGREES REMARK 500 1 0C K 84 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 1 0G K 86 N9 - C1' - C2' ANGL. DEV. = -8.2 DEGREES REMARK 500 1 0G K 86 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 0C L 93 N3 - C4 - C5 ANGL. DEV. = -3.0 DEGREES REMARK 500 1 0U M 80 N1 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 0G M 82 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 0G M 82 C5 - C6 - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 0G M 82 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 0C M 84 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 0C M 84 C5 - C4 - N4 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 0G M 85 C4 - C5 - N7 ANGL. DEV. = -2.9 DEGREES REMARK 500 1 0G M 85 N9 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 0G M 86 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 0C N 90 N3 - C2 - O2 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 0C N 91 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 0G K 82 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 2 0G K 83 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 2 0G K 85 C4 - C5 - C6 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 0G K 85 C5 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 0C L 91 C3' - C2' - C1' ANGL. DEV. = -4.4 DEGREES REMARK 500 2 0G L 92 O5' - C5' - C4' ANGL. DEV. = -9.1 DEGREES REMARK 500 2 0C L 94 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 2 0U L 95 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES REMARK 500 2 0G L 97 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 2 0U M 80 N1 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 2 0G M 82 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 0G M 82 C5 - C6 - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 0G M 82 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 0C M 84 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 0C M 84 C5 - C4 - N4 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 0G M 85 C4 - C5 - N7 ANGL. DEV. = -2.9 DEGREES REMARK 500 2 0G M 85 N9 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 0G M 86 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 0C N 90 N3 - C2 - O2 ANGL. DEV. = 5.3 DEGREES REMARK 500 2 0C N 91 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH K 59 O REMARK 620 2 HOH N 45 O 70.4 REMARK 620 3 HOH N 53 O 139.9 74.5 REMARK 620 4 HOH N 60 O 146.6 143.0 71.1 REMARK 620 5 HOH N 65 O 70.4 137.0 131.4 78.1 REMARK 620 6 HOH N 73 O 83.3 82.6 73.4 100.0 76.1 REMARK 620 7 0G N 97 O3' 113.3 74.6 74.1 83.3 138.5 144.2 REMARK 620 8 0G N 97 O2' 78.9 112.0 133.4 83.3 76.6 151.2 64.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G L 97 O3' REMARK 620 2 0G L 97 O2' 62.8 REMARK 620 3 HOH L 101 O 79.1 72.9 REMARK 620 4 HOH L 115 O 76.7 117.5 143.7 REMARK 620 5 HOH L 168 O 139.4 77.5 81.8 133.3 REMARK 620 6 HOH L 205 O 71.3 126.9 73.3 73.5 135.2 REMARK 620 7 HOH M 117 O 110.5 84.5 148.2 66.9 71.5 138.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA M 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 8 O REMARK 620 2 HOH M 74 O 60.1 REMARK 620 3 0G M 82 N7 106.2 79.8 REMARK 620 4 HOH M 91 O 148.9 115.2 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA M 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 29 O REMARK 620 2 HOH M 36 O 73.7 REMARK 620 3 HOH M 43 O 71.3 143.3 REMARK 620 4 HOH M 46 O 138.6 147.4 68.8 REMARK 620 5 HOH M 62 O 132.1 75.2 138.8 76.7 REMARK 620 6 0G M 86 O3' 72.3 84.5 74.6 106.6 138.8 REMARK 620 7 0G M 86 O2' 130.2 77.9 117.6 79.5 75.8 65.0 REMARK 620 8 HOH M 136 O 74.5 98.2 83.1 90.1 74.9 144.4 150.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 4 O REMARK 620 2 HOH N 5 O 84.5 REMARK 620 3 HOH N 24 O 152.9 74.9 REMARK 620 4 HOH N 31 O 80.4 81.2 79.3 REMARK 620 5 HOH N 63 O 85.2 82.0 108.6 158.8 REMARK 620 6 HOH N 122 O 117.0 146.2 75.6 77.5 123.2 REMARK 620 7 HOH N 125 O 76.1 154.0 128.4 111.7 79.3 59.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA N 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH N 5 O REMARK 620 2 HOH N 17 O 73.4 REMARK 620 3 HOH N 24 O 76.6 116.2 REMARK 620 4 HOH N 63 O 71.8 121.4 99.5 REMARK 620 5 HOH N 84 O 150.0 133.0 97.6 80.4 REMARK 620 6 0G N 96 OP1 135.0 80.5 83.4 152.1 71.7 REMARK 620 7 HOH N 111 O 101.3 72.6 169.2 70.0 78.9 104.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA N 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA L 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA M 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL N 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G32 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GPM RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ4 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ5 RELATED DB: PDB REMARK 900 ANOTHER CRYSTAL OF SIMILAR TYPE REMARK 900 RELATED ID: 2GQ7 RELATED DB: PDB DBREF 2GQ6 K 79 86 PDB 2GQ6 2GQ6 79 86 DBREF 2GQ6 L 90 97 PDB 2GQ6 2GQ6 90 97 DBREF 2GQ6 M 79 86 PDB 2GQ6 2GQ6 79 86 DBREF 2GQ6 N 90 97 PDB 2GQ6 2GQ6 90 97 SEQRES 1 K 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 L 8 0C 0C 0G 0C 0C 0U 0G 0G SEQRES 1 M 8 0C 0U 0G 0G 0G 0C 0G 0G SEQRES 1 N 8 0C 0C 0G 0C 0C 0U 0G 0G HET 0C K 79 16 HET 0U K 80 20 HET 0G K 81 23 HET 0G K 82 23 HET 0G K 83 23 HET 0C K 84 20 HET 0G K 85 23 HET 0G K 86 23 HET 0C L 90 17 HET 0C L 91 20 HET 0G L 92 23 HET 0C L 93 20 HET 0C L 94 20 HET 0U L 95 20 HET 0G L 96 23 HET 0G L 97 23 HET 0C M 79 17 HET 0U M 80 20 HET 0G M 81 23 HET 0G M 82 23 HET 0G M 83 23 HET 0C M 84 20 HET 0G M 85 23 HET 0G M 86 23 HET 0C N 90 17 HET 0C N 91 20 HET 0G N 92 23 HET 0C N 93 20 HET 0C N 94 20 HET 0U N 95 20 HET 0G N 96 23 HET 0G N 97 23 HET CA L 310 1 HET CA M 308 1 HET CA M 311 1 HET CA N 302 1 HET CA N 304 1 HET CA N 306 1 HET GOL N 301 6 HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 0C 12(C9 H14 N3 O8 P) FORMUL 1 0U 4(C9 H13 N2 O9 P) FORMUL 1 0G 16(C10 H14 N5 O8 P) FORMUL 5 CA 6(CA 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *214(H2 O) LINK O3'A 0C K 79 P A 0U K 80 1555 1555 1.59 LINK O3'A 0U K 80 P A 0G K 81 1555 1555 1.61 LINK O3'A 0G K 81 P A 0G K 82 1555 1555 1.62 LINK O3'A 0G K 82 P A 0G K 83 1555 1555 1.60 LINK O3'A 0G K 83 P A 0C K 84 1555 1555 1.60 LINK O3'A 0C K 84 P A 0G K 85 1555 1555 1.60 LINK O3'A 0G K 85 P A 0G K 86 1555 1555 1.57 LINK O3'A 0C L 90 P A 0C L 91 1555 1555 1.57 LINK O3'A 0C L 91 P A 0G L 92 1555 1555 1.60 LINK O3'A 0G L 92 P A 0C L 93 1555 1555 1.61 LINK O3'A 0C L 93 P A 0C L 94 1555 1555 1.60 LINK O3'A 0C L 94 P A 0U L 95 1555 1555 1.59 LINK O3'A 0U L 95 P A 0G L 96 1555 1555 1.60 LINK O3'A 0G L 96 P A 0G L 97 1555 1555 1.61 LINK O3'A 0C M 79 P A 0U M 80 1555 1555 1.59 LINK O3'A 0U M 80 P A 0G M 81 1555 1555 1.61 LINK O3'A 0G M 81 P A 0G M 82 1555 1555 1.59 LINK O3'A 0G M 82 P A 0G M 83 1555 1555 1.59 LINK O3'A 0G M 83 P A 0C M 84 1555 1555 1.57 LINK O3'A 0C M 84 P A 0G M 85 1555 1555 1.59 LINK O3'A 0G M 85 P A 0G M 86 1555 1555 1.59 LINK O3'A 0C N 90 P A 0C N 91 1555 1555 1.61 LINK O3'A 0C N 91 P A 0G N 92 1555 1555 1.59 LINK O3'A 0G N 92 P A 0C N 93 1555 1555 1.57 LINK O3'A 0C N 93 P A 0C N 94 1555 1555 1.62 LINK O3'A 0C N 94 P A 0U N 95 1555 1555 1.58 LINK O3'A 0U N 95 P A 0G N 96 1555 1555 1.58 LINK O3'A 0G N 96 P A 0G N 97 1555 1555 1.60 LINK O AHOH K 59 CA A CA N 306 1555 1555 2.21 LINK O3'A 0G L 97 CA A CA L 310 1555 1555 2.64 LINK O2'A 0G L 97 CA A CA L 310 1555 1555 2.48 LINK O AHOH L 101 CA A CA L 310 1555 1555 2.51 LINK O AHOH L 115 CA A CA L 310 1555 1555 2.36 LINK O AHOH L 168 CA A CA L 310 1555 1555 2.44 LINK O AHOH L 205 CA A CA L 310 1555 1555 2.57 LINK CA A CA L 310 O AHOH M 117 1555 1555 2.24 LINK O AHOH M 8 CA A CA M 311 1555 1555 2.34 LINK O AHOH M 29 CA A CA M 308 1555 1555 2.32 LINK O AHOH M 36 CA A CA M 308 1555 1555 2.44 LINK O AHOH M 43 CA A CA M 308 1555 1555 2.55 LINK O AHOH M 46 CA A CA M 308 1555 1555 2.24 LINK O AHOH M 62 CA A CA M 308 1555 1555 2.49 LINK O AHOH M 74 CA A CA M 311 1555 1555 2.71 LINK N7 A 0G M 82 CA A CA M 311 1555 1555 2.67 LINK O3'A 0G M 86 CA A CA M 308 1555 1555 2.44 LINK O2'A 0G M 86 CA A CA M 308 1555 1555 2.50 LINK O AHOH M 91 CA A CA M 311 1555 1555 2.64 LINK O AHOH M 136 CA A CA M 308 1555 1555 2.35 LINK O AHOH N 4 CA A CA N 302 1555 1555 2.41 LINK O AHOH N 5 CA A CA N 302 1555 1555 2.28 LINK O AHOH N 5 CA A CA N 304 1555 1555 2.34 LINK O AHOH N 17 CA A CA N 304 1555 1555 2.18 LINK O AHOH N 24 CA A CA N 302 1555 1555 2.69 LINK O AHOH N 24 CA A CA N 304 1555 1555 2.56 LINK O AHOH N 31 CA A CA N 302 1555 1555 2.39 LINK O AHOH N 45 CA A CA N 306 1555 1555 2.45 LINK O AHOH N 53 CA A CA N 306 1555 1555 2.39 LINK O AHOH N 60 CA A CA N 306 1555 1555 2.50 LINK O AHOH N 63 CA A CA N 302 1555 1555 1.96 LINK O AHOH N 63 CA A CA N 304 1555 1555 2.42 LINK O AHOH N 65 CA A CA N 306 1555 1555 2.54 LINK O AHOH N 73 CA A CA N 306 1555 1555 2.44 LINK O AHOH N 84 CA A CA N 304 1555 1555 2.42 LINK OP1A 0G N 96 CA A CA N 304 1555 1555 2.29 LINK O3'A 0G N 97 CA A CA N 306 1555 1555 2.47 LINK O2'A 0G N 97 CA A CA N 306 1555 1555 2.49 LINK O AHOH N 111 CA A CA N 304 1555 1555 2.30 LINK O AHOH N 122 CA A CA N 302 1555 1555 2.33 LINK O AHOH N 125 CA A CA N 302 1555 1555 2.43 SITE 1 AC1 8 HOH N 4 HOH N 5 HOH N 24 HOH N 31 SITE 2 AC1 8 HOH N 63 HOH N 122 HOH N 125 CA N 304 SITE 1 AC2 8 HOH N 5 HOH N 17 HOH N 24 HOH N 63 SITE 2 AC2 8 HOH N 84 0G N 96 HOH N 111 CA N 302 SITE 1 AC3 7 HOH K 59 HOH N 45 HOH N 53 HOH N 60 SITE 2 AC3 7 HOH N 65 HOH N 73 0G N 97 SITE 1 AC4 7 HOH M 29 HOH M 36 HOH M 43 HOH M 46 SITE 2 AC4 7 HOH M 62 0G M 86 HOH M 136 SITE 1 AC5 6 0G L 97 HOH L 101 HOH L 115 HOH L 168 SITE 2 AC5 6 HOH L 205 HOH M 117 SITE 1 AC6 4 HOH M 8 HOH M 74 0G M 82 HOH M 91 SITE 1 AC7 6 0G K 85 0C L 91 0G L 92 HOH N 80 SITE 2 AC7 6 0G N 92 0C N 93 CRYST1 26.112 37.933 45.290 113.53 100.03 93.55 P -1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038297 0.002376 0.008544 0.00000 SCALE2 0.000000 0.026413 0.012124 0.00000 SCALE3 0.000000 0.000000 0.024672 0.00000