PDB Short entry for 2GQJ HEADER GENE REGULATION 21-APR-06 2GQJ TITLE SOLUTION STRUCTURE OF THE TWO ZF-C2H2 LIKE DOMAINS(493-575) OF HUMAN TITLE 2 ZINC FINGER PROTEIN KIAA1196 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN KIAA1196; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 LIKE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1196; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-73; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS ZF-C2H2 LIKE DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2GQJ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2GQJ 1 VERSN REVDAT 1 21-OCT-06 2GQJ 0 JRNL AUTH C.KUROSAKI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE TWO ZF-C2H2 LIKE DOMAINS(493-575) JRNL TITL 2 OF HUMAN ZINC FINGER PROTEIN KIAA1196 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037431. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2; 1MM IDA, 10% D2O; REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.934, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 3.54 -69.82 REMARK 500 1 PRO A 28 3.24 -69.70 REMARK 500 1 THR A 29 -63.79 -103.15 REMARK 500 1 ASN A 31 43.79 73.82 REMARK 500 1 THR A 34 170.65 -44.72 REMARK 500 1 THR A 37 46.47 35.35 REMARK 500 1 LEU A 38 -55.20 -122.99 REMARK 500 1 MET A 45 -27.93 -37.78 REMARK 500 1 CYS A 57 179.45 -53.59 REMARK 500 1 LYS A 65 40.44 -82.89 REMARK 500 1 SER A 66 120.69 -172.63 REMARK 500 1 GLU A 86 138.22 -34.93 REMARK 500 2 ARG A 22 -72.27 -100.31 REMARK 500 2 VAL A 26 -178.54 -56.56 REMARK 500 2 PRO A 28 1.74 -69.84 REMARK 500 2 LYS A 65 45.83 -82.98 REMARK 500 2 SER A 66 107.08 -171.71 REMARK 500 2 HIS A 78 75.21 -105.88 REMARK 500 2 SER A 79 112.81 -36.13 REMARK 500 2 ASP A 84 160.73 -42.60 REMARK 500 3 ARG A 22 -74.21 -95.24 REMARK 500 3 PRO A 28 2.50 -69.75 REMARK 500 3 THR A 34 157.07 -39.27 REMARK 500 3 THR A 37 41.17 37.98 REMARK 500 3 LEU A 41 -37.94 -39.69 REMARK 500 3 LYS A 65 43.08 -104.01 REMARK 500 3 SER A 66 107.80 -173.08 REMARK 500 3 LYS A 81 129.15 -34.45 REMARK 500 3 PRO A 95 87.88 -69.79 REMARK 500 3 SER A 96 41.06 -87.28 REMARK 500 4 GLU A 13 -66.94 -93.15 REMARK 500 4 ARG A 22 -71.46 -95.44 REMARK 500 4 PRO A 28 6.30 -69.72 REMARK 500 4 ASN A 31 33.28 73.53 REMARK 500 4 THR A 34 142.53 -36.78 REMARK 500 4 LEU A 38 -69.36 -122.06 REMARK 500 4 CYS A 57 -178.92 -52.73 REMARK 500 4 PRO A 82 89.42 -69.75 REMARK 500 4 GLU A 89 114.41 -38.66 REMARK 500 5 ARG A 22 -68.74 -103.13 REMARK 500 5 VAL A 26 173.20 -56.15 REMARK 500 5 PRO A 28 4.12 -69.74 REMARK 500 5 THR A 34 154.69 -44.35 REMARK 500 5 CYS A 48 -74.31 -37.95 REMARK 500 5 LYS A 65 31.68 -85.51 REMARK 500 5 HIS A 78 70.52 -106.93 REMARK 500 5 ALA A 80 77.00 -63.82 REMARK 500 5 GLU A 92 41.75 70.32 REMARK 500 6 PRO A 11 90.94 -69.77 REMARK 500 6 ARG A 22 -71.94 -92.69 REMARK 500 REMARK 500 THIS ENTRY HAS 221 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 CYS A 30 SG 111.2 REMARK 620 3 HIS A 44 NE2 114.2 105.9 REMARK 620 4 CYS A 48 SG 108.5 102.9 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 CYS A 60 SG 108.3 REMARK 620 3 HIS A 73 NE2 113.7 105.0 REMARK 620 4 HIS A 78 NE2 105.5 114.6 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001170.1 RELATED DB: TARGETDB DBREF 2GQJ A 8 92 UNP Q96KM6 K1196_HUMAN 493 577 SEQADV 2GQJ GLY A 1 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 2 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 3 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ GLY A 4 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 5 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 6 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ GLY A 7 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 93 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ GLY A 94 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ PRO A 95 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 96 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ SER A 97 UNP Q96KM6 CLONING ARTIFACT SEQADV 2GQJ GLY A 98 UNP Q96KM6 CLONING ARTIFACT SEQRES 1 A 98 GLY SER SER GLY SER SER GLY PRO GLY GLY PRO GLU GLU SEQRES 2 A 98 GLN TRP GLN ARG ALA ILE HIS GLU ARG GLY GLU ALA VAL SEQRES 3 A 98 CYS PRO THR CYS ASN VAL VAL THR ARG LYS THR LEU VAL SEQRES 4 A 98 GLY LEU LYS LYS HIS MET GLU VAL CYS GLN LYS LEU GLN SEQRES 5 A 98 ASP ALA LEU LYS CYS GLN HIS CYS ARG LYS GLN PHE LYS SEQRES 6 A 98 SER LYS ALA GLY LEU ASN TYR HIS THR MET ALA GLU HIS SEQRES 7 A 98 SER ALA LYS PRO SER ASP ALA GLU ALA SER GLU GLY GLY SEQRES 8 A 98 GLU SER GLY PRO SER SER GLY HET ZN A 200 1 HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLU A 13 ALA A 18 1 6 HELIX 2 2 LEU A 38 LYS A 56 1 19 HELIX 3 3 SER A 66 HIS A 78 1 13 LINK SG CYS A 27 ZN ZN A 200 1555 1555 2.33 LINK SG CYS A 30 ZN ZN A 200 1555 1555 2.33 LINK NE2 HIS A 44 ZN ZN A 200 1555 1555 2.05 LINK SG CYS A 48 ZN ZN A 200 1555 1555 2.34 LINK SG CYS A 57 ZN ZN A 300 1555 1555 2.34 LINK SG CYS A 60 ZN ZN A 300 1555 1555 2.35 LINK NE2 HIS A 73 ZN ZN A 300 1555 1555 2.05 LINK NE2 HIS A 78 ZN ZN A 300 1555 1555 2.05 SITE 1 AC1 4 CYS A 27 CYS A 30 HIS A 44 CYS A 48 SITE 1 AC2 4 CYS A 57 CYS A 60 HIS A 73 HIS A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000