PDB Short entry for 2GSF HEADER TRANSFERASE 26-APR-06 2GSF TITLE THE HUMAN EPHA3 RECEPTOR TYROSINE KINASE AND JUXTAMEMBRANE REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, JUXTAMEMBRANE REGION, RESIDUES 577-947; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR ETK1, HEK, HEK4; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA3, ETK, ETK1, HEK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS ATP-BINDING, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHORYLATION, KEYWDS 2 RECEPTOR, TRANSFERASE, TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, KEYWDS 3 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,T.DAVIS,A.DONG,E.M.NEWMAN,F.MACKENZIE,J.WEIGELT, AUTHOR 2 M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 14-FEB-24 2GSF 1 REMARK REVDAT 4 20-OCT-21 2GSF 1 SEQADV REVDAT 3 18-OCT-17 2GSF 1 REMARK REVDAT 2 24-FEB-09 2GSF 1 VERSN REVDAT 1 13-JUN-06 2GSF 0 JRNL AUTH T.DAVIS,J.R.WALKER,A.DONG,E.M.NEWMAN,F.MACKENZIE,J.WEIGELT, JRNL AUTH 2 M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, JRNL AUTH 3 S.DHE-PAGANON JRNL TITL STRUCTURE OF THE HUMAN EPHA3 RECEPTOR TYROSINE KINASE AND JRNL TITL 2 JUXTAMEMBRANE REGION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1560 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2277 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3073 ; 1.415 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;32.043 ;23.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;12.625 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.989 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1679 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1131 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1602 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1443 ; 1.761 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 2.573 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 3.487 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 814 ; 5.096 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 595 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6967 27.4756 51.7155 REMARK 3 T TENSOR REMARK 3 T11: -0.0199 T22: -0.0027 REMARK 3 T33: 0.1051 T12: -0.0100 REMARK 3 T13: 0.0656 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 37.9840 L22: 5.3050 REMARK 3 L33: 1.7940 L12: 8.2747 REMARK 3 L13: 5.8881 L23: 3.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -2.6656 S13: 0.7593 REMARK 3 S21: 0.4680 S22: -0.7039 S23: 1.1246 REMARK 3 S31: 0.2506 S32: -0.4992 S33: 0.7307 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 613 A 623 REMARK 3 ORIGIN FOR THE GROUP (A): -22.4452 13.0449 41.8963 REMARK 3 T TENSOR REMARK 3 T11: -0.0182 T22: 0.0664 REMARK 3 T33: 0.0707 T12: 0.0170 REMARK 3 T13: -0.0039 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.5886 L22: 7.9474 REMARK 3 L33: 2.5828 L12: -0.4124 REMARK 3 L13: 1.9579 L23: 3.2341 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: -0.2067 S13: 0.0645 REMARK 3 S21: -0.1637 S22: -0.0930 S23: 0.4442 REMARK 3 S31: -0.1669 S32: -0.1897 S33: 0.1536 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 624 A 634 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3731 4.3270 55.1079 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0447 REMARK 3 T33: -0.0030 T12: -0.0117 REMARK 3 T13: -0.0107 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 3.2954 L22: 22.2238 REMARK 3 L33: 28.6398 L12: 0.6714 REMARK 3 L13: 1.7986 L23: 22.8370 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.3530 S13: -0.3466 REMARK 3 S21: 1.1163 S22: 0.4876 S23: -0.6575 REMARK 3 S31: 1.4044 S32: 0.3149 S33: -0.4628 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 635 A 653 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6509 8.1806 39.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.0333 REMARK 3 T33: 0.0721 T12: -0.0050 REMARK 3 T13: -0.0049 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.1152 L22: 1.7809 REMARK 3 L33: 7.2802 L12: -0.6666 REMARK 3 L13: 1.4714 L23: -0.7388 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.1257 S13: -0.1003 REMARK 3 S21: -0.0216 S22: 0.0908 S23: 0.0795 REMARK 3 S31: 0.1286 S32: 0.0034 S33: -0.1436 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 654 A 676 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8027 17.9505 57.4287 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: 0.0957 REMARK 3 T33: 0.0083 T12: -0.0440 REMARK 3 T13: 0.0054 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 10.3288 L22: 4.8410 REMARK 3 L33: 2.2944 L12: 6.1678 REMARK 3 L13: -4.8466 L23: -3.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.3758 S12: -0.6878 S13: 0.4387 REMARK 3 S21: 0.2611 S22: -0.2614 S23: 0.2704 REMARK 3 S31: -0.1324 S32: 0.1243 S33: -0.1144 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 677 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7563 15.6859 46.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0293 REMARK 3 T33: 0.0501 T12: 0.0140 REMARK 3 T13: 0.0014 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.4866 L22: 0.8206 REMARK 3 L33: 1.7743 L12: 0.3562 REMARK 3 L13: -0.6369 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0552 S13: 0.0389 REMARK 3 S21: -0.0283 S22: -0.0256 S23: 0.1507 REMARK 3 S31: -0.0760 S32: -0.2001 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 714 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1695 0.0598 51.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.0189 REMARK 3 T33: 0.0550 T12: -0.0025 REMARK 3 T13: -0.0035 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.5293 L22: 4.0391 REMARK 3 L33: 1.2275 L12: -2.6923 REMARK 3 L13: 1.9641 L23: -2.0149 REMARK 3 S TENSOR REMARK 3 S11: 0.1545 S12: -0.0549 S13: -0.1237 REMARK 3 S21: -0.0658 S22: -0.0372 S23: 0.1978 REMARK 3 S31: 0.1690 S32: -0.0611 S33: -0.1173 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 715 A 742 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9061 11.2863 48.7399 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0419 REMARK 3 T33: 0.0304 T12: -0.0107 REMARK 3 T13: -0.0020 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9004 L22: 3.9110 REMARK 3 L33: 0.8044 L12: -0.7131 REMARK 3 L13: 0.1698 L23: -0.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.0437 S13: -0.0141 REMARK 3 S21: -0.0750 S22: -0.0397 S23: -0.0502 REMARK 3 S31: -0.0286 S32: 0.0243 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 743 A 752 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3276 14.1118 58.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0379 REMARK 3 T33: 0.0207 T12: -0.0065 REMARK 3 T13: 0.0178 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.0321 L22: 13.1928 REMARK 3 L33: 1.7134 L12: 0.8468 REMARK 3 L13: 1.2624 L23: 2.4902 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1671 S13: 0.0683 REMARK 3 S21: 0.5141 S22: -0.0805 S23: 0.3672 REMARK 3 S31: 0.0502 S32: -0.1580 S33: 0.0730 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 753 A 788 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0776 12.6008 53.6126 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0645 REMARK 3 T33: 0.0584 T12: 0.0184 REMARK 3 T13: 0.0232 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.7089 L22: 2.0847 REMARK 3 L33: 2.5716 L12: -0.1626 REMARK 3 L13: 0.7225 L23: -0.4460 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.3290 S13: 0.1487 REMARK 3 S21: 0.1944 S22: 0.0389 S23: 0.1849 REMARK 3 S31: -0.3087 S32: -0.2874 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 789 A 821 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3355 14.9215 62.6778 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0513 REMARK 3 T33: 0.0117 T12: -0.0018 REMARK 3 T13: 0.0028 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.5880 L22: 1.6531 REMARK 3 L33: 1.2328 L12: -0.2201 REMARK 3 L13: 0.2588 L23: 0.5196 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.1178 S13: 0.0318 REMARK 3 S21: 0.0836 S22: -0.0266 S23: 0.0406 REMARK 3 S31: -0.0735 S32: -0.0873 S33: 0.0381 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 822 A 833 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0370 5.5369 71.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0484 REMARK 3 T33: 0.0230 T12: -0.0184 REMARK 3 T13: 0.0151 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.5868 L22: 4.7272 REMARK 3 L33: 8.1581 L12: 1.4857 REMARK 3 L13: 2.5834 L23: 1.5481 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: -0.1811 S13: -0.0377 REMARK 3 S21: 0.2982 S22: -0.1773 S23: 0.1922 REMARK 3 S31: 0.1253 S32: -0.1820 S33: 0.1399 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 834 A 869 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7515 13.0417 63.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0687 REMARK 3 T33: 0.0336 T12: -0.0254 REMARK 3 T13: -0.0127 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.2700 L22: 1.3261 REMARK 3 L33: 2.2270 L12: 0.0712 REMARK 3 L13: 0.0224 L23: -0.7397 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0767 S13: 0.0264 REMARK 3 S21: 0.1265 S22: -0.1116 S23: -0.1012 REMARK 3 S31: -0.0722 S32: 0.1178 S33: 0.0717 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 870 A 893 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6513 11.7511 47.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.1144 REMARK 3 T33: 0.0738 T12: -0.0298 REMARK 3 T13: 0.0218 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.8342 L22: 5.0299 REMARK 3 L33: 3.3381 L12: -3.0023 REMARK 3 L13: -1.1947 L23: 1.1913 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.1756 S13: -0.0662 REMARK 3 S21: -0.0712 S22: 0.0309 S23: -0.2637 REMARK 3 S31: 0.1036 S32: 0.2909 S33: 0.0395 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 899 A 904 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9354 4.3749 69.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.1045 REMARK 3 T33: 0.0058 T12: 0.0213 REMARK 3 T13: -0.0308 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 24.6003 L22: 21.5685 REMARK 3 L33: 19.6004 L12: 0.2683 REMARK 3 L13: 3.9199 L23: -2.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.3354 S12: 0.1934 S13: -1.0956 REMARK 3 S21: -0.6969 S22: -0.0966 S23: -0.6090 REMARK 3 S31: 1.1106 S32: 0.8117 S33: -0.2388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : COLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29945 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.09900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 21.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML PROTEIN, 25% PEG 3350, 0.2M REMARK 280 AMMONIUM SULFATE, 0.1M HEPES, 20% GLYCEROL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.13700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 575 REMARK 465 SER A 576 REMARK 465 ASP A 577 REMARK 465 GLU A 578 REMARK 465 LYS A 579 REMARK 465 ARG A 580 REMARK 465 LEU A 581 REMARK 465 HIS A 582 REMARK 465 PHE A 583 REMARK 465 GLY A 584 REMARK 465 ASN A 585 REMARK 465 GLY A 586 REMARK 465 HIS A 587 REMARK 465 LEU A 588 REMARK 465 LYS A 589 REMARK 465 LEU A 590 REMARK 465 PRO A 591 REMARK 465 GLY A 592 REMARK 465 LEU A 593 REMARK 465 ARG A 594 REMARK 465 THR A 601 REMARK 465 TYR A 602 REMARK 465 GLU A 603 REMARK 465 ASP A 604 REMARK 465 PRO A 605 REMARK 465 THR A 606 REMARK 465 GLN A 607 REMARK 465 THR A 608 REMARK 465 LEU A 771 REMARK 465 GLU A 772 REMARK 465 ASP A 773 REMARK 465 ASP A 774 REMARK 465 PRO A 775 REMARK 465 GLU A 776 REMARK 465 ALA A 777 REMARK 465 ALA A 778 REMARK 465 TYR A 779 REMARK 465 THR A 780 REMARK 465 THR A 781 REMARK 465 ARG A 782 REMARK 465 GLY A 783 REMARK 465 GLY A 784 REMARK 465 LYS A 785 REMARK 465 ILE A 786 REMARK 465 ALA A 894 REMARK 465 ALA A 895 REMARK 465 ALA A 896 REMARK 465 ARG A 897 REMARK 465 PRO A 898 REMARK 465 GLN A 905 REMARK 465 SER A 906 REMARK 465 ASN A 907 REMARK 465 VAL A 908 REMARK 465 ASP A 909 REMARK 465 ILE A 910 REMARK 465 THR A 911 REMARK 465 THR A 912 REMARK 465 PHE A 913 REMARK 465 ARG A 914 REMARK 465 THR A 915 REMARK 465 THR A 916 REMARK 465 GLY A 917 REMARK 465 ASP A 918 REMARK 465 TRP A 919 REMARK 465 LEU A 920 REMARK 465 ASN A 921 REMARK 465 GLY A 922 REMARK 465 VAL A 923 REMARK 465 TRP A 924 REMARK 465 THR A 925 REMARK 465 ALA A 926 REMARK 465 HIS A 927 REMARK 465 CYS A 928 REMARK 465 LYS A 929 REMARK 465 GLU A 930 REMARK 465 ILE A 931 REMARK 465 PHE A 932 REMARK 465 THR A 933 REMARK 465 GLY A 934 REMARK 465 VAL A 935 REMARK 465 GLU A 936 REMARK 465 TYR A 937 REMARK 465 SER A 938 REMARK 465 SER A 939 REMARK 465 CYS A 940 REMARK 465 ASP A 941 REMARK 465 THR A 942 REMARK 465 ILE A 943 REMARK 465 ALA A 944 REMARK 465 LYS A 945 REMARK 465 ILE A 946 REMARK 465 SER A 947 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 742 OG SER A 768 2.13 REMARK 500 OD1 ASP A 624 O HOH A 176 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 627 68.82 -116.04 REMARK 500 LYS A 645 -6.67 81.34 REMARK 500 ARG A 745 -12.11 76.26 REMARK 500 ASP A 764 76.56 60.33 REMARK 500 TYR A 798 27.00 -151.26 REMARK 500 TRP A 826 -131.56 49.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS IN ACCORDANCE WITH THE REFERENCE CHIARI ET REMARK 999 AL., 2000, CANCER RES., 60, 4855-4863 DBREF 2GSF A 577 947 UNP P29320 EPHA3_HUMAN 577 947 SEQADV 2GSF GLY A 575 UNP P29320 CLONING ARTIFACT SEQADV 2GSF SER A 576 UNP P29320 CLONING ARTIFACT SEQADV 2GSF THR A 608 UNP P29320 ALA 608 ENGINEERED MUTATION SEQADV 2GSF THR A 911 UNP P29320 SER 911 SEE REMARK 999 SEQADV 2GSF TRP A 924 UNP P29320 ARG 924 SEE REMARK 999 SEQRES 1 A 373 GLY SER ASP GLU LYS ARG LEU HIS PHE GLY ASN GLY HIS SEQRES 2 A 373 LEU LYS LEU PRO GLY LEU ARG THR TYR VAL ASP PRO HIS SEQRES 3 A 373 THR TYR GLU ASP PRO THR GLN THR VAL HIS GLU PHE ALA SEQRES 4 A 373 LYS GLU LEU ASP ALA THR ASN ILE SER ILE ASP LYS VAL SEQRES 5 A 373 VAL GLY ALA GLY GLU PHE GLY GLU VAL CYS SER GLY ARG SEQRES 6 A 373 LEU LYS LEU PRO SER LYS LYS GLU ILE SER VAL ALA ILE SEQRES 7 A 373 LYS THR LEU LYS VAL GLY TYR THR GLU LYS GLN ARG ARG SEQRES 8 A 373 ASP PHE LEU GLY GLU ALA SER ILE MET GLY GLN PHE ASP SEQRES 9 A 373 HIS PRO ASN ILE ILE ARG LEU GLU GLY VAL VAL THR LYS SEQRES 10 A 373 SER LYS PRO VAL MET ILE VAL THR GLU TYR MET GLU ASN SEQRES 11 A 373 GLY SER LEU ASP SER PHE LEU ARG LYS HIS ASP ALA GLN SEQRES 12 A 373 PHE THR VAL ILE GLN LEU VAL GLY MET LEU ARG GLY ILE SEQRES 13 A 373 ALA SER GLY MET LYS TYR LEU SER ASP MET GLY TYR VAL SEQRES 14 A 373 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU ILE ASN SER SEQRES 15 A 373 ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG SEQRES 16 A 373 VAL LEU GLU ASP ASP PRO GLU ALA ALA TYR THR THR ARG SEQRES 17 A 373 GLY GLY LYS ILE PRO ILE ARG TRP THR SER PRO GLU ALA SEQRES 18 A 373 ILE ALA TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SEQRES 19 A 373 SER TYR GLY ILE VAL LEU TRP GLU VAL MET SER TYR GLY SEQRES 20 A 373 GLU ARG PRO TYR TRP GLU MET SER ASN GLN ASP VAL ILE SEQRES 21 A 373 LYS ALA VAL ASP GLU GLY TYR ARG LEU PRO PRO PRO MET SEQRES 22 A 373 ASP CYS PRO ALA ALA LEU TYR GLN LEU MET LEU ASP CYS SEQRES 23 A 373 TRP GLN LYS ASP ARG ASN ASN ARG PRO LYS PHE GLU GLN SEQRES 24 A 373 ILE VAL SER ILE LEU ASP LYS LEU ILE ARG ASN PRO GLY SEQRES 25 A 373 SER LEU LYS ILE ILE THR SER ALA ALA ALA ARG PRO SER SEQRES 26 A 373 ASN LEU LEU LEU ASP GLN SER ASN VAL ASP ILE THR THR SEQRES 27 A 373 PHE ARG THR THR GLY ASP TRP LEU ASN GLY VAL TRP THR SEQRES 28 A 373 ALA HIS CYS LYS GLU ILE PHE THR GLY VAL GLU TYR SER SEQRES 29 A 373 SER CYS ASP THR ILE ALA LYS ILE SER FORMUL 2 HOH *264(H2 O) HELIX 1 1 ASP A 617 THR A 619 5 3 HELIX 2 2 THR A 660 GLY A 675 1 16 HELIX 3 3 SER A 706 LYS A 713 1 8 HELIX 4 4 THR A 719 MET A 740 1 22 HELIX 5 5 ALA A 748 ARG A 750 5 3 HELIX 6 6 PRO A 787 THR A 791 5 5 HELIX 7 7 SER A 792 ARG A 799 1 8 HELIX 8 8 THR A 802 SER A 819 1 18 HELIX 9 9 SER A 829 GLY A 840 1 12 HELIX 10 10 PRO A 850 TRP A 861 1 12 HELIX 11 11 ASP A 864 ARG A 868 5 5 HELIX 12 12 LYS A 870 ASN A 884 1 15 HELIX 13 13 PRO A 885 ILE A 890 5 6 SHEET 1 A 5 ILE A 621 ALA A 629 0 SHEET 2 A 5 GLU A 634 LYS A 641 -1 O VAL A 635 N VAL A 627 SHEET 3 A 5 GLU A 647 THR A 654 -1 O ILE A 652 N CYS A 636 SHEET 4 A 5 MET A 696 GLU A 700 -1 O THR A 699 N ALA A 651 SHEET 5 A 5 LEU A 685 VAL A 689 -1 N GLY A 687 O VAL A 698 SHEET 1 B 2 ILE A 752 ILE A 754 0 SHEET 2 B 2 CYS A 760 VAL A 762 -1 O LYS A 761 N LEU A 753 SHEET 1 C 2 TYR A 841 ARG A 842 0 SHEET 2 C 2 LEU A 902 LEU A 903 -1 O LEU A 902 N ARG A 842 CISPEP 1 LYS A 693 PRO A 694 0 4.18 CRYST1 54.163 38.274 76.333 90.00 102.39 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018463 0.000000 0.004056 0.00000 SCALE2 0.000000 0.026127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013413 0.00000