PDB Short entry for 2GUD HEADER SUGAR BINDING PROTEIN 29-APR-06 2GUD TITLE CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 0.94 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRIFFITHSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GRFT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFITHSIA; SOURCE 3 ORGANISM_TAXID: 35158; SOURCE 4 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS GRIFFITHSIN, LECTINS, DOMAIN SWAPPING, MANNOSE BINDING, HIV, SARS, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.E.ZIOLKOWSKA,A.WLODAWER REVDAT 4 30-AUG-23 2GUD 1 HETSYN REVDAT 3 29-JUL-20 2GUD 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 24-FEB-09 2GUD 1 VERSN REVDAT 1 01-AUG-06 2GUD 0 JRNL AUTH N.E.ZIOLKOWSKA,B.R.O'KEEFE,T.MORI,C.ZHU,B.GIOMARELLI, JRNL AUTH 2 F.VOJDANI,K.E.PALMER,J.B.MCMAHON,A.WLODAWER JRNL TITL DOMAIN-SWAPPED STRUCTURE OF THE POTENT ANTIVIRAL PROTEIN JRNL TITL 2 GRIFFITHSIN AND ITS MODE OF CARBOHYDRATE BINDING. JRNL REF STRUCTURE V. 14 1127 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16843894 JRNL DOI 10.1016/J.STR.2006.05.017 REMARK 2 REMARK 2 RESOLUTION. 0.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 148646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.543 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2031 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1722 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2738 ; 2.154 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4047 ; 4.862 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 7.342 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;42.700 ;23.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 323 ;12.480 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2191 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 319 ; 0.293 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1811 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1026 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1205 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 68 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 1.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 523 ; 1.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1918 ; 2.418 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 964 ; 3.645 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 819 ; 4.273 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4474 ; 1.838 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 458 ;11.393 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3715 ; 6.485 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000037560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148669 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GTY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M MAGNESIUM SULFATE,0.1M MES, 1:10 REMARK 280 RATIO OF GRIFFITHSIN MONOMERS TO MANNOSE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.72000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 60 O HOH B 721 1.63 REMARK 500 O LEU A 18 O HOH A 684 2.15 REMARK 500 O HOH A 598 O HOH A 604 2.18 REMARK 500 O HOH A 605 O HOH A 657 2.18 REMARK 500 OD1 ASN A 60 O2 EDO A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 528 O HOH A 704 2655 2.15 REMARK 500 O HOH A 528 O HOH B 701 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 57 CD1 TYR A 57 CE1 0.114 REMARK 500 SER A 73 CB SER A 73 OG -0.086 REMARK 500 TYR A 110 CE2 TYR A 110 CD2 0.101 REMARK 500 THR B 3 CA THR B 3 CB 0.164 REMARK 500 SER B 13 CB SER B 13 OG 0.093 REMARK 500 SER B 13 CB SER B 13 OG -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 61 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 MET A 61 CG - SD - CE ANGL. DEV. = -22.6 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET B 61 CG - SD - CE ANGL. DEV. = -24.4 DEGREES REMARK 500 MET B 78 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 TYR B 110 CE1 - CZ - CE2 ANGL. DEV. = 9.9 DEGREES REMARK 500 TYR B 110 CZ - CE2 - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GTY RELATED DB: PDB REMARK 900 THE SAME PROTEIN UNLIGANDED REMARK 900 RELATED ID: 2GUC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX AT 1.78 A RESOLUTION. REMARK 900 RELATED ID: 2GUE RELATED DB: PDB REMARK 900 RELATED ID: 2GUX RELATED DB: PDB DBREF 2GUD A 1 121 UNP P84801 GRFIN_GRISQ 1 121 DBREF 2GUD B 1 121 UNP P84801 GRFIN_GRISQ 1 121 SEQRES 1 A 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 A 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 A 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 A 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 A 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 A 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 A 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 A 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 A 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 A 122 TYR TYR GLU GLN TYR SEQRES 1 B 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 B 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 B 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 B 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 B 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 B 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 B 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 B 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 B 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 B 122 TYR TYR GLU GLN TYR HET ACE A 0 3 HET ACE B 0 3 HET MAN A 122 12 HET BMA A 123 12 HET MAN A 124 12 HET MAN A 125 12 HET BMA A 126 12 HET EDO A 502 4 HET MAN B 122 12 HET MAN B 123 12 HET MAN B 124 12 HET SO4 B 501 5 HETNAM ACE ACETYL GROUP HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 8 EDO C2 H6 O2 FORMUL 12 SO4 O4 S 2- FORMUL 13 HOH *442(H2 O) SHEET 1 A 4 SER A 1 GLY A 8 0 SHEET 2 A 4 LEU B 111 GLN B 120 -1 O TYR B 118 N THR A 3 SHEET 3 A 4 VAL B 98 ALA B 107 -1 N ILE B 101 O TYR B 117 SHEET 4 A 4 SER A 13 PHE A 15 -1 N PHE A 15 O GLY B 105 SHEET 1 B 4 VAL A 37 GLY A 40 0 SHEET 2 B 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 B 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 B 4 ASN A 45 LEU A 46 -1 O ASN A 45 N SER A 25 SHEET 1 C 4 VAL A 37 GLY A 40 0 SHEET 2 C 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 C 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 C 4 PHE A 50 THR A 51 -1 O PHE A 50 N ILE A 21 SHEET 1 D 4 ARG A 81 GLY A 86 0 SHEET 2 D 4 ILE A 69 THR A 76 -1 N PHE A 74 O PHE A 82 SHEET 3 D 4 ILE A 58 SER A 65 -1 N ASN A 60 O GLU A 75 SHEET 4 D 4 SER A 91 SER A 96 -1 O LEU A 95 N MET A 61 SHEET 1 E 4 SER B 1 GLY B 8 0 SHEET 2 E 4 LEU A 111 GLN A 120 -1 N TYR A 118 O THR B 3 SHEET 3 E 4 VAL A 98 ALA A 107 -1 N ASN A 104 O ASP A 115 SHEET 4 E 4 SER B 13 PHE B 15 -1 O PHE B 15 N GLY A 105 SHEET 1 F 4 VAL B 37 GLY B 40 0 SHEET 2 F 4 LEU B 29 ILE B 34 -1 N ILE B 34 O VAL B 37 SHEET 3 F 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 F 4 ASN B 45 LEU B 46 -1 O ASN B 45 N SER B 25 SHEET 1 G 4 VAL B 37 GLY B 40 0 SHEET 2 G 4 LEU B 29 ILE B 34 -1 N ILE B 34 O VAL B 37 SHEET 3 G 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 G 4 PHE B 50 THR B 51 -1 O PHE B 50 N ILE B 21 SHEET 1 H 4 ARG B 81 GLY B 86 0 SHEET 2 H 4 ILE B 69 THR B 76 -1 N PHE B 74 O PHE B 82 SHEET 3 H 4 ILE B 58 SER B 65 -1 N ASN B 60 O GLU B 75 SHEET 4 H 4 SER B 91 SER B 96 -1 O ASN B 93 N ILE B 63 LINK C ACE A 0 N SER A 1 1555 1555 1.32 LINK C ACE B 0 N SER B 1 1555 1555 1.36 CISPEP 1 GLY A 83 PRO A 84 0 6.19 CISPEP 2 GLY B 83 PRO B 84 0 4.70 CRYST1 53.740 39.440 57.160 90.00 91.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018608 0.000000 0.000325 0.00000 SCALE2 0.000000 0.025355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017497 0.00000 HETATM 1 C ACE A 0 20.127 10.708 4.555 1.00 19.66 C ANISOU 1 C ACE A 0 2834 2612 2023 -200 -53 168 C HETATM 2 O ACE A 0 20.192 11.539 5.436 1.00 23.59 O ANISOU 2 O ACE A 0 3370 3012 2581 -177 83 -15 O HETATM 3 CH3 ACE A 0 18.924 9.833 4.431 1.00 18.86 C ANISOU 3 CH3 ACE A 0 2806 2701 1660 -226 -5 438 C