PDB Short entry for 2GZY HEADER ELECTRON TRANSPORT 12-MAY-06 2GZY TITLE SOLUTION STRUCTURES OF THE REDUCED FORM OF THIOREDOXIN FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALPHA/BETA, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.XU,X.ZHANG,J.CHEN,C.JIN REVDAT 4 09-MAR-22 2GZY 1 REMARK REVDAT 3 24-FEB-09 2GZY 1 VERSN REVDAT 2 11-NOV-08 2GZY 1 JRNL REVDAT 1 13-FEB-07 2GZY 0 JRNL AUTH Y.LI,Y.HU,X.ZHANG,H.XU,E.LESCOP,B.XIA,C.JIN JRNL TITL CONFORMATIONAL FLUCTUATIONS COUPLED TO THE THIOL-DISULFIDE JRNL TITL 2 TRANSFER BETWEEN THIOREDOXIN AND ARSENATE REDUCTASE IN JRNL TITL 3 BACILLUS SUBTILIS. JRNL REF J.BIOL.CHEM. V. 282 11078 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17303556 JRNL DOI 10.1074/JBC.M700970200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : CASE, D.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GZY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20MM TRIS-HCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM THIOREDOXIN U-15N, 13C; 20MM REMARK 210 TRIS-HCL BUFFER; 20MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 -6.57 -143.78 REMARK 500 1 MET A 46 -2.94 -140.62 REMARK 500 1 ASP A 48 -40.71 -150.66 REMARK 500 1 MET A 70 26.85 -148.63 REMARK 500 2 SER A 10 -2.83 -145.42 REMARK 500 2 ASP A 48 -43.60 -143.21 REMARK 500 2 ASN A 60 44.94 -142.41 REMARK 500 2 MET A 70 28.00 -155.35 REMARK 500 3 ASN A 60 50.85 -140.22 REMARK 500 3 MET A 70 28.50 -154.54 REMARK 500 4 ASN A 60 36.66 -146.06 REMARK 500 4 MET A 70 32.20 -155.45 REMARK 500 4 ASP A 80 -19.26 59.13 REMARK 500 5 SER A 10 -4.93 -140.29 REMARK 500 5 ASP A 48 -41.16 -154.29 REMARK 500 5 MET A 70 -22.83 -161.04 REMARK 500 6 SER A 10 -3.61 -145.50 REMARK 500 6 ASP A 48 -37.49 -147.24 REMARK 500 6 ASN A 60 45.77 -142.01 REMARK 500 6 MET A 70 27.25 -153.89 REMARK 500 7 SER A 10 -1.82 -142.82 REMARK 500 7 ASP A 48 -40.30 -152.43 REMARK 500 7 ASN A 60 30.80 -142.40 REMARK 500 7 MET A 70 25.14 -153.49 REMARK 500 8 SER A 10 -2.42 -143.17 REMARK 500 8 ASP A 48 -43.45 -140.69 REMARK 500 8 ASN A 60 48.66 -141.39 REMARK 500 8 MET A 70 25.02 -153.16 REMARK 500 9 SER A 10 -2.57 -140.41 REMARK 500 9 MET A 46 10.53 -146.06 REMARK 500 9 ASP A 48 -39.42 -148.66 REMARK 500 9 ASN A 60 46.70 -141.21 REMARK 500 9 MET A 70 30.75 -153.97 REMARK 500 10 MET A 46 15.63 -144.44 REMARK 500 10 ASP A 48 -40.93 -153.51 REMARK 500 10 MET A 70 30.29 -155.26 REMARK 500 11 SER A 10 -3.09 -142.95 REMARK 500 11 GLU A 17 17.54 -144.02 REMARK 500 11 ASN A 60 36.45 -146.54 REMARK 500 11 MET A 70 30.73 -154.70 REMARK 500 12 ASP A 48 -39.76 -149.00 REMARK 500 12 ASN A 60 46.44 -143.31 REMARK 500 12 MET A 70 -24.00 -162.57 REMARK 500 13 MET A 70 29.02 -155.42 REMARK 500 14 ALA A 2 -178.38 64.73 REMARK 500 14 ASN A 60 47.12 -141.38 REMARK 500 14 MET A 70 28.90 -157.66 REMARK 500 15 ASP A 48 -40.69 -154.98 REMARK 500 15 ASN A 60 46.29 -89.45 REMARK 500 15 MET A 70 28.22 -154.18 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 TYR A 67 0.08 SIDE CHAIN REMARK 500 12 TYR A 67 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GZZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN, THE OXIDIZED FORM DBREF 2GZY A 1 104 UNP P14949 THIO_BACSU 0 103 SEQRES 1 A 104 MET ALA ILE VAL LYS ALA THR ASP GLN SER PHE SER ALA SEQRES 2 A 104 GLU THR SER GLU GLY VAL VAL LEU ALA ASP PHE TRP ALA SEQRES 3 A 104 PRO TRP CYS GLY PRO CYS LYS MET ILE ALA PRO VAL LEU SEQRES 4 A 104 GLU GLU LEU ASP GLN GLU MET GLY ASP LYS LEU LYS ILE SEQRES 5 A 104 VAL LYS ILE ASP VAL ASP GLU ASN GLN GLU THR ALA GLY SEQRES 6 A 104 LYS TYR GLY VAL MET SER ILE PRO THR LEU LEU VAL LEU SEQRES 7 A 104 LYS ASP GLY GLU VAL VAL GLU THR SER VAL GLY PHE LYS SEQRES 8 A 104 PRO LYS GLU ALA LEU GLN GLU LEU VAL ASN LYS HIS LEU HELIX 1 1 SER A 10 THR A 15 1 6 HELIX 2 2 CYS A 29 GLY A 47 1 19 HELIX 3 3 ASN A 60 LYS A 66 1 7 HELIX 4 4 PRO A 92 LYS A 102 1 11 SHEET 1 A 5 VAL A 4 LYS A 5 0 SHEET 2 A 5 LYS A 51 ASP A 56 1 O ILE A 52 N VAL A 4 SHEET 3 A 5 VAL A 19 TRP A 25 1 N LEU A 21 O LYS A 51 SHEET 4 A 5 THR A 74 LYS A 79 -1 O LEU A 78 N VAL A 20 SHEET 5 A 5 GLU A 82 VAL A 88 -1 O VAL A 84 N VAL A 77 CISPEP 1 ILE A 72 PRO A 73 1 -10.46 CISPEP 2 ILE A 72 PRO A 73 2 -10.65 CISPEP 3 ILE A 72 PRO A 73 3 -10.49 CISPEP 4 ILE A 72 PRO A 73 4 -10.71 CISPEP 5 ILE A 72 PRO A 73 5 -11.66 CISPEP 6 ILE A 72 PRO A 73 6 -11.15 CISPEP 7 ILE A 72 PRO A 73 7 -10.54 CISPEP 8 ILE A 72 PRO A 73 8 -11.11 CISPEP 9 ILE A 72 PRO A 73 9 -11.28 CISPEP 10 ILE A 72 PRO A 73 10 -11.73 CISPEP 11 ILE A 72 PRO A 73 11 -10.30 CISPEP 12 ILE A 72 PRO A 73 12 -10.40 CISPEP 13 ILE A 72 PRO A 73 13 -11.27 CISPEP 14 ILE A 72 PRO A 73 14 -10.55 CISPEP 15 ILE A 72 PRO A 73 15 -11.10 CISPEP 16 ILE A 72 PRO A 73 16 -11.26 CISPEP 17 ILE A 72 PRO A 73 17 -10.27 CISPEP 18 ILE A 72 PRO A 73 18 -10.24 CISPEP 19 ILE A 72 PRO A 73 19 -10.24 CISPEP 20 ILE A 72 PRO A 73 20 -11.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000