PDB Short entry for 2H77 HEADER HORMONE/GROWTH FACTOR 01-JUN-06 2H77 TITLE CRYSTAL STRUCTURE OF HUMAN TR ALPHA BOUND T3 IN MONOCLINIC SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THRA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TR ALPHA, T3, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO,L.BLEICHER, AUTHOR 2 A.L.B.AMBROSIO,A.C.M.FIGUEIRA,M.A.M.SANTOS,M.O.NETO,H.FISCHER, AUTHOR 3 H.F.M.TOGASHI,A.F.CRAIEVICH,R.C.GARRAT,J.D.BAXTER,P.WEBB, AUTHOR 4 I.POLIKARPOV REVDAT 5 15-NOV-23 2H77 1 ATOM REVDAT 4 20-OCT-21 2H77 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2H77 1 AUTHOR REMARK REVDAT 2 24-FEB-09 2H77 1 VERSN REVDAT 1 25-JUL-06 2H77 0 JRNL AUTH A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO, JRNL AUTH 2 A.L.B.AMBROSIO,L.BLEICHER,A.C.M.FIGUEIRA,M.A.M.SANTOS, JRNL AUTH 3 M.O.NETO,H.FISCHER,M.TOGASHI,A.F.CRAIEVICH,R.C.GARRATT, JRNL AUTH 4 J.D.BAXTER,P.WEBB,I.POLIKARPOV JRNL TITL STRUCTURAL REARRANGEMENTS IN THE THYROID HORMONE RECEPTOR JRNL TITL 2 HINGE DOMAIN AND THEIR PUTATIVE ROLE IN THE RECEPTOR JRNL TITL 3 FUNCTION. JRNL REF J.MOL.BIOL. V. 360 586 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16781732 JRNL DOI 10.1016/J.JMB.2006.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 18467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1362 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.588 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2117 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2866 ; 2.617 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 7.528 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;36.016 ;23.978 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;19.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.924 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1579 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 940 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1390 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.246 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.372 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 1.264 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2079 ; 2.066 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 3.347 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 786 ; 4.934 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 62.994 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : 0.38300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CACODYLATE AND 0.1M REMARK 280 SODIUM ACETATE THREEHYDRATE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.78450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.31300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.78450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.31300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 142 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 HIS A 146 REMARK 465 MET A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 MET A 150 REMARK 465 ILE A 151 REMARK 465 ASP A 407 REMARK 465 GLN A 408 REMARK 465 GLU A 409 REMARK 465 VAL A 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 412 O HOH A 455 1.68 REMARK 500 OD1 ASN A 310 O HOH A 472 1.89 REMARK 500 NZ LYS A 357 O HOH A 466 2.02 REMARK 500 OD1 ASP A 272 NH1 ARG A 284 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLN A 187 CA CAS A 334 4545 0.38 REMARK 500 CB ARG A 188 N ASP A 336 4545 0.76 REMARK 500 CG ARG A 188 C VAL A 335 4545 0.95 REMARK 500 NE ARG A 188 CG1 VAL A 335 4545 0.96 REMARK 500 CG ARG A 188 O VAL A 335 4545 1.03 REMARK 500 CA ARG A 188 N ASP A 336 4545 1.07 REMARK 500 NE2 GLN A 187 OD2 ASP A 246 4545 1.15 REMARK 500 CB HIS A 184 CG2 VAL A 335 4545 1.22 REMARK 500 CB ARG A 188 C VAL A 335 4545 1.25 REMARK 500 N LYS A 186 O LEU A 333 4545 1.33 REMARK 500 CA ARG A 188 CA ASP A 336 4545 1.37 REMARK 500 O SER A 183 O LEU A 332 4545 1.39 REMARK 500 CD ARG A 188 CG1 VAL A 335 4545 1.39 REMARK 500 O HIS A 184 N VAL A 335 4545 1.42 REMARK 500 CB ARG A 188 CA ASP A 336 4545 1.45 REMARK 500 C ARG A 188 CA ASP A 336 4545 1.47 REMARK 500 O HIS A 184 CB VAL A 335 4545 1.49 REMARK 500 O GLY A 278 OD2 ASP A 336 4545 1.49 REMARK 500 O ARG A 188 C ASP A 336 4545 1.51 REMARK 500 C ARG A 188 C ASP A 336 4545 1.52 REMARK 500 CD GLN A 187 OD2 ASP A 246 4545 1.58 REMARK 500 O ARG A 188 CB ASP A 336 4545 1.60 REMARK 500 CA ARG A 188 C ASP A 336 4545 1.61 REMARK 500 O HIS A 184 CA VAL A 335 4545 1.63 REMARK 500 C ARG A 188 N LYS A 337 4545 1.64 REMARK 500 C ARG A 188 CB ASP A 336 4545 1.64 REMARK 500 O ARG A 188 CA ASP A 336 4545 1.74 REMARK 500 O GLN A 187 N ILE A 338 4545 1.74 REMARK 500 N ARG A 189 O HOH A 429 4545 1.74 REMARK 500 CA ARG A 188 N LYS A 337 4545 1.79 REMARK 500 CA HIS A 184 CG2 VAL A 335 4545 1.79 REMARK 500 N ARG A 188 N ASP A 336 4545 1.83 REMARK 500 CA ARG A 188 C VAL A 335 4545 1.83 REMARK 500 CA GLN A 187 CA CAS A 334 4545 1.84 REMARK 500 N ARG A 188 C CAS A 334 4545 1.84 REMARK 500 NE2 GLN A 181 OD1 ASP A 336 4545 1.85 REMARK 500 O HIS A 184 CG2 VAL A 335 4545 1.86 REMARK 500 C SER A 183 O LEU A 332 4545 1.87 REMARK 500 NE ARG A 189 CE2 CAS A 334 4545 1.88 REMARK 500 CA HIS A 184 O LEU A 332 4545 1.90 REMARK 500 CG ARG A 188 CA VAL A 335 4545 1.91 REMARK 500 C GLN A 187 C CAS A 334 4545 1.92 REMARK 500 CB ARG A 188 O VAL A 335 4545 1.93 REMARK 500 NE2 GLN A 187 CG ASP A 246 4545 1.94 REMARK 500 C HIS A 184 CG2 VAL A 335 4545 1.95 REMARK 500 CG GLN A 187 OD2 ASP A 246 4545 1.98 REMARK 500 O TRP A 185 O HOH A 429 4545 1.98 REMARK 500 O GLN A 187 CA LYS A 337 4545 2.00 REMARK 500 CG ARG A 188 N ASP A 336 4545 2.02 REMARK 500 CB GLN A 187 CD1 ILE A 338 4545 2.03 REMARK 500 REMARK 500 THIS ENTRY HAS 70 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 163 CG GLU A 163 CD 0.121 REMARK 500 GLU A 173 CG GLU A 173 CD 0.094 REMARK 500 TYR A 345 CD1 TYR A 345 CE1 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 167 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 211 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 LEU A 323 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP A 373 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 153 0.59 59.56 REMARK 500 GLN A 156 -23.53 -172.12 REMARK 500 PRO A 193 132.56 -38.44 REMARK 500 ASP A 272 53.71 71.03 REMARK 500 SER A 277 28.04 48.38 REMARK 500 CAS A 334 59.15 -102.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 152 SER A 153 -144.18 REMARK 500 SER A 153 LEU A 154 -148.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAS A 334 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 186 O REMARK 620 2 CAS A 334 SG 38.8 REMARK 620 3 CAS A 334 CE1 130.8 120.3 REMARK 620 4 CAS A 334 CE2 91.0 122.2 114.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H6W RELATED DB: PDB REMARK 900 RELATED ID: 2H79 RELATED DB: PDB DBREF 2H77 A 148 410 UNP Q6FH41 Q6FH41_HUMAN 148 410 SEQADV 2H77 ALA A 142 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 ARG A 143 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 GLY A 144 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 SER A 145 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 HIS A 146 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 MET A 147 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H77 CAS A 334 UNP Q6FH41 CYS 334 MODIFIED RESIDUE SEQADV 2H77 CAS A 380 UNP Q6FH41 CYS 380 MODIFIED RESIDUE SEQADV 2H77 CAS A 388 UNP Q6FH41 MET 388 ENGINEERED MUTATION SEQADV 2H77 CAS A 392 UNP Q6FH41 CYS 392 MODIFIED RESIDUE SEQRES 1 A 269 ALA ARG GLY SER HIS MET GLU GLU MET ILE ARG SER LEU SEQRES 2 A 269 GLN GLN ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU SEQRES 3 A 269 ILE HIS ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA SEQRES 4 A 269 GLN GLY SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO SEQRES 5 A 269 ASP ASP ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP SEQRES 6 A 269 GLY ASP LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR SEQRES 7 A 269 LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE SEQRES 8 A 269 ALA LYS LYS LEU PRO MET PHE SER GLU LEU PRO CYS GLU SEQRES 9 A 269 ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE SEQRES 10 A 269 MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER SEQRES 11 A 269 ASP THR LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG SEQRES 12 A 269 GLU GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP SEQRES 13 A 269 ALA ILE PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN SEQRES 14 A 269 LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU SEQRES 15 A 269 LEU MET SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP SEQRES 16 A 269 LYS ILE GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE SEQRES 17 A 269 GLU HIS TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS SEQRES 18 A 269 PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG SEQRES 19 A 269 MET ILE GLY ALA CAS HIS ALA SER ARG PHE LEU HIS CAS SEQRES 20 A 269 LYS VAL GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE SEQRES 21 A 269 LEU GLU VAL PHE GLU ASP GLN GLU VAL MODRES 2H77 CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H77 CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H77 CAS A 388 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H77 CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 334 9 HET CAS A 380 9 HET CAS A 388 9 HET CAS A 392 9 HET T3 A 1 23 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM T3 3,5,3'TRIIODOTHYRONINE HETSYN T3 T3; THYROID HORMONE; LIOTHYRONINE FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 T3 C15 H12 I3 N O4 FORMUL 3 HOH *70(H2 O) HELIX 1 1 THR A 161 SER A 177 1 17 HELIX 2 2 HIS A 184 ARG A 189 1 6 HELIX 3 3 ASP A 211 ILE A 221 1 11 HELIX 4 4 ILE A 221 LYS A 235 1 15 HELIX 5 5 LEU A 236 GLU A 241 1 6 HELIX 6 6 PRO A 243 VAL A 265 1 23 HELIX 7 7 LYS A 283 GLY A 290 1 8 HELIX 8 8 GLY A 293 SER A 307 1 15 HELIX 9 9 ASP A 312 MET A 325 1 14 HELIX 10 10 CAS A 334 LYS A 357 1 24 HELIX 11 11 HIS A 362 CAS A 392 1 31 HELIX 12 12 PRO A 393 PHE A 397 5 5 HELIX 13 13 PRO A 398 GLU A 406 1 9 SHEET 1 A 3 LYS A 190 PHE A 191 0 SHEET 2 A 3 MET A 280 VAL A 282 1 O ALA A 281 N LYS A 190 SHEET 3 A 3 LEU A 274 LEU A 276 -1 N LEU A 276 O MET A 280 LINK C LYS A 186 CA CAS A 334 4555 1555 1.36 LINK C LYS A 186 CB CAS A 334 4555 1555 1.53 LINK O LYS A 186 CB CAS A 334 4555 1555 1.79 LINK C LYS A 186 SG CAS A 334 4555 1555 1.78 LINK O LYS A 186 SG CAS A 334 4555 1555 1.45 LINK N GLN A 187 N CAS A 334 4555 1555 1.76 LINK N GLN A 187 C CAS A 334 4555 1555 1.37 LINK CA GLN A 187 C CAS A 334 4555 1555 1.54 LINK C GLN A 187 O CAS A 334 4555 1555 0.99 LINK CA GLN A 187 CB CAS A 334 4555 1555 1.48 LINK CA GLN A 187 O CAS A 334 4555 1555 1.11 LINK N GLN A 187 CB CAS A 334 4555 1555 1.28 LINK CB GLN A 187 O CAS A 334 4555 1555 1.72 LINK N ARG A 188 O CAS A 334 4555 1555 1.63 LINK CG ARG A 189 CE2 CAS A 334 4555 1555 1.56 LINK CD ARG A 189 CE2 CAS A 334 4555 1555 1.60 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.32 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.31 LINK C HIS A 387 N CAS A 388 1555 1555 1.33 LINK C CAS A 388 N LYS A 389 1555 1555 1.34 LINK C GLU A 391 N CAS A 392 1555 1555 1.32 LINK C CAS A 392 N PRO A 393 1555 1555 1.35 LINK O LYS A 186 AS CAS A 334 4555 1555 1.65 SITE 1 AC1 16 PHE A 218 ILE A 222 ALA A 225 ARG A 228 SITE 2 AC1 16 MET A 259 ARG A 262 ALA A 263 THR A 275 SITE 3 AC1 16 LEU A 276 SER A 277 GLY A 290 LEU A 292 SITE 4 AC1 16 HIS A 381 CAS A 388 PHE A 401 HOH A 442 CRYST1 117.569 80.626 62.614 90.00 121.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008506 0.000000 0.005128 0.00000 SCALE2 0.000000 0.012403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018649 0.00000