PDB Short entry for 2HHL HEADER HYDROLASE 28-JUN-06 2HHL TITLE CRYSTAL STRUCTURE OF THE HUMAN SMALL CTD PHOSPHATASE 3 ISOFORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTD SMALL PHOSPHATASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 82-265; COMPND 5 SYNONYM: CTDSP-LIKE, SMALL C-TERMINAL DOMAIN PHOSPHATASE 3, SMALL CTD COMPND 6 PHOSPHATASE 3, SCP3, NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 1, COMPND 7 NLI-INTERACTING FACTOR 1, NIF-LIKE PROTEIN, RBSP3, YA22 PROTEIN, COMPND 8 HYA22; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTDSPL, C3ORF8, NIF1, NIFL, YA22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CTD PHOSPHATASE, KEGGINS ANION, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,U.RAMAGOPAL,J.M.SAUDER,K.D.SCHWINN, AUTHOR 2 D.A.THOMPSON,M.E.RUTTER,M.DICKEY,C.GROSHONG,K.T.BAIN,J.M.ADAMS, AUTHOR 3 C.REYES,I.ROONEY,A.POWELL,A.BOICE,T.GHEYI,S.OZYURT,S.ATWELL, AUTHOR 4 S.R.WASSERMAN,S.EMTAGE,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH AUTHOR 5 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 30-AUG-23 2HHL 1 REMARK REVDAT 5 03-FEB-21 2HHL 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 14-NOV-18 2HHL 1 AUTHOR REVDAT 3 18-OCT-17 2HHL 1 REMARK REVDAT 2 25-MAR-08 2HHL 1 VERSN REVDAT 1 29-AUG-06 2HHL 0 JRNL AUTH S.C.ALMO,J.B.BONANNO,J.M.SAUDER,S.EMTAGE,T.P.DILORENZO, JRNL AUTH 2 V.MALASHKEVICH,S.R.WASSERMAN,S.SWAMINATHAN,S.ESWARAMOORTHY, JRNL AUTH 3 R.AGARWAL,D.KUMARAN,M.MADEGOWDA,S.RAGUMANI,Y.PATSKOVSKY, JRNL AUTH 4 J.ALVARADO,U.A.RAMAGOPAL,J.FABER-BARATA,M.R.CHANCE,A.SALI, JRNL AUTH 5 A.FISER,Z.Y.ZHANG,D.S.LAWRENCE,S.K.BURLEY JRNL TITL STRUCTURAL GENOMICS OF PROTEIN PHOSPHATASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 121 2007 JRNL REFN ISSN 1345-711X JRNL PMID 18058037 JRNL DOI 10.1007/S10969-007-9036-1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 47398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6142 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8701 ; 3.199 ; 2.044 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 711 ; 6.636 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 278 ;37.668 ;23.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 980 ;14.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;21.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4517 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2501 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3942 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 516 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 148 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3707 ; 1.113 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5877 ; 1.774 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2872 ; 2.754 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2626 ; 3.786 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.74 REMARK 200 MONOCHROMATOR : X6A REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1TA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 BIS-TRIS, 25% W/V PEG 3350, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.92850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 GLU A 188 REMARK 465 GLY A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 185 REMARK 465 ASP B 186 REMARK 465 ASP B 187 REMARK 465 GLU B 188 REMARK 465 GLY B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASP C 187 REMARK 465 GLU C 188 REMARK 465 GLY C 189 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 HIS C 192 REMARK 465 HIS C 193 REMARK 465 HIS C 194 REMARK 465 HIS C 195 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LEU D 3 REMARK 465 ARG D 4 REMARK 465 GLN D 5 REMARK 465 VAL D 6 REMARK 465 ILE D 7 REMARK 465 PRO D 8 REMARK 465 ILE D 9 REMARK 465 PRO D 10 REMARK 465 SER D 11 REMARK 465 PRO D 12 REMARK 465 PRO D 13 REMARK 465 ASP D 186 REMARK 465 ASP D 187 REMARK 465 GLU D 188 REMARK 465 GLY D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 465 HIS D 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS D 15 NH2 ARG D 132 2.07 REMARK 500 N PHE D 44 O37 KEG D 901 2.13 REMARK 500 O HOH C 938 O HOH C 1000 2.15 REMARK 500 O HOH D 1029 O HOH D 1038 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY A 27 O27 KEG A 902 1655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 -67.95 -101.79 REMARK 500 PHE A 115 -151.50 -120.96 REMARK 500 SER A 131 -9.35 -57.80 REMARK 500 ASP A 165 0.22 -161.68 REMARK 500 PRO B 13 153.82 -47.33 REMARK 500 LEU B 35 -68.48 -94.82 REMARK 500 ARG B 123 45.10 39.51 REMARK 500 ASP B 165 6.13 -155.24 REMARK 500 PRO C 12 62.16 -102.05 REMARK 500 LEU C 35 -72.67 -97.66 REMARK 500 PHE C 115 -163.37 -121.94 REMARK 500 ARG C 123 53.03 39.43 REMARK 500 SER C 138 -15.54 -48.56 REMARK 500 ASP C 165 -5.34 -158.20 REMARK 500 LEU D 35 -71.85 -102.60 REMARK 500 THR D 38 -60.32 -109.09 REMARK 500 PHE D 115 -162.43 -113.94 REMARK 500 ARG D 123 56.32 35.06 REMARK 500 PHE D 164 -51.25 -127.63 REMARK 500 ASP D 165 -0.41 -159.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 KEG C 900 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KEG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KEG C 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KEG D 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TA0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A RNA-POLYMERASE II BINDING PROTEIN WITH REMARK 900 ASSOCIATED LIGAND REMARK 900 RELATED ID: NYSGXRC-8718A RELATED DB: TARGETDB DBREF 2HHL A 4 187 UNP O15194 CTDSL_HUMAN 82 265 DBREF 2HHL B 4 187 UNP O15194 CTDSL_HUMAN 82 265 DBREF 2HHL C 4 187 UNP O15194 CTDSL_HUMAN 82 265 DBREF 2HHL D 4 187 UNP O15194 CTDSL_HUMAN 82 265 SEQADV 2HHL MET A 1 UNP O15194 INITIATING METHIONINE SEQADV 2HHL SER A 2 UNP O15194 CLONING ARTIFACT SEQADV 2HHL LEU A 3 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLU A 188 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLY A 189 UNP O15194 CLONING ARTIFACT SEQADV 2HHL HIS A 190 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS A 191 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS A 192 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS A 193 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS A 194 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS A 195 UNP O15194 EXPRESSION TAG SEQADV 2HHL MET B 1 UNP O15194 INITIATING METHIONINE SEQADV 2HHL SER B 2 UNP O15194 CLONING ARTIFACT SEQADV 2HHL LEU B 3 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLU B 188 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLY B 189 UNP O15194 CLONING ARTIFACT SEQADV 2HHL HIS B 190 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS B 191 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS B 192 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS B 193 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS B 194 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS B 195 UNP O15194 EXPRESSION TAG SEQADV 2HHL MET C 1 UNP O15194 INITIATING METHIONINE SEQADV 2HHL SER C 2 UNP O15194 CLONING ARTIFACT SEQADV 2HHL LEU C 3 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLU C 188 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLY C 189 UNP O15194 CLONING ARTIFACT SEQADV 2HHL HIS C 190 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS C 191 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS C 192 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS C 193 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS C 194 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS C 195 UNP O15194 EXPRESSION TAG SEQADV 2HHL MET D 1 UNP O15194 INITIATING METHIONINE SEQADV 2HHL SER D 2 UNP O15194 CLONING ARTIFACT SEQADV 2HHL LEU D 3 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLU D 188 UNP O15194 CLONING ARTIFACT SEQADV 2HHL GLY D 189 UNP O15194 CLONING ARTIFACT SEQADV 2HHL HIS D 190 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS D 191 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS D 192 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS D 193 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS D 194 UNP O15194 EXPRESSION TAG SEQADV 2HHL HIS D 195 UNP O15194 EXPRESSION TAG SEQRES 1 A 195 MET SER LEU ARG GLN VAL ILE PRO ILE PRO SER PRO PRO SEQRES 2 A 195 ALA LYS TYR LEU LEU PRO GLU VAL THR VAL LEU ASP TYR SEQRES 3 A 195 GLY LYS LYS CYS VAL VAL ILE ASP LEU ASP GLU THR LEU SEQRES 4 A 195 VAL HIS SER SER PHE LYS PRO ILE SER ASN ALA ASP PHE SEQRES 5 A 195 ILE VAL PRO VAL GLU ILE ASP GLY THR ILE HIS GLN VAL SEQRES 6 A 195 TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN SEQRES 7 A 195 ARG MET GLY GLN LEU PHE GLU CYS VAL LEU PHE THR ALA SEQRES 8 A 195 SER LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU SEQRES 9 A 195 ASP ARG TRP GLY VAL PHE ARG ALA ARG LEU PHE ARG GLU SEQRES 10 A 195 SER CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SEQRES 11 A 195 SER ARG LEU GLY ARG GLU LEU SER LYS VAL ILE ILE VAL SEQRES 12 A 195 ASP ASN SER PRO ALA SER TYR ILE PHE HIS PRO GLU ASN SEQRES 13 A 195 ALA VAL PRO VAL GLN SER TRP PHE ASP ASP MET THR ASP SEQRES 14 A 195 THR GLU LEU LEU ASP LEU ILE PRO PHE PHE GLU GLY LEU SEQRES 15 A 195 SER ARG GLU ASP ASP GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 195 MET SER LEU ARG GLN VAL ILE PRO ILE PRO SER PRO PRO SEQRES 2 B 195 ALA LYS TYR LEU LEU PRO GLU VAL THR VAL LEU ASP TYR SEQRES 3 B 195 GLY LYS LYS CYS VAL VAL ILE ASP LEU ASP GLU THR LEU SEQRES 4 B 195 VAL HIS SER SER PHE LYS PRO ILE SER ASN ALA ASP PHE SEQRES 5 B 195 ILE VAL PRO VAL GLU ILE ASP GLY THR ILE HIS GLN VAL SEQRES 6 B 195 TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN SEQRES 7 B 195 ARG MET GLY GLN LEU PHE GLU CYS VAL LEU PHE THR ALA SEQRES 8 B 195 SER LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU SEQRES 9 B 195 ASP ARG TRP GLY VAL PHE ARG ALA ARG LEU PHE ARG GLU SEQRES 10 B 195 SER CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SEQRES 11 B 195 SER ARG LEU GLY ARG GLU LEU SER LYS VAL ILE ILE VAL SEQRES 12 B 195 ASP ASN SER PRO ALA SER TYR ILE PHE HIS PRO GLU ASN SEQRES 13 B 195 ALA VAL PRO VAL GLN SER TRP PHE ASP ASP MET THR ASP SEQRES 14 B 195 THR GLU LEU LEU ASP LEU ILE PRO PHE PHE GLU GLY LEU SEQRES 15 B 195 SER ARG GLU ASP ASP GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 195 MET SER LEU ARG GLN VAL ILE PRO ILE PRO SER PRO PRO SEQRES 2 C 195 ALA LYS TYR LEU LEU PRO GLU VAL THR VAL LEU ASP TYR SEQRES 3 C 195 GLY LYS LYS CYS VAL VAL ILE ASP LEU ASP GLU THR LEU SEQRES 4 C 195 VAL HIS SER SER PHE LYS PRO ILE SER ASN ALA ASP PHE SEQRES 5 C 195 ILE VAL PRO VAL GLU ILE ASP GLY THR ILE HIS GLN VAL SEQRES 6 C 195 TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN SEQRES 7 C 195 ARG MET GLY GLN LEU PHE GLU CYS VAL LEU PHE THR ALA SEQRES 8 C 195 SER LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU SEQRES 9 C 195 ASP ARG TRP GLY VAL PHE ARG ALA ARG LEU PHE ARG GLU SEQRES 10 C 195 SER CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SEQRES 11 C 195 SER ARG LEU GLY ARG GLU LEU SER LYS VAL ILE ILE VAL SEQRES 12 C 195 ASP ASN SER PRO ALA SER TYR ILE PHE HIS PRO GLU ASN SEQRES 13 C 195 ALA VAL PRO VAL GLN SER TRP PHE ASP ASP MET THR ASP SEQRES 14 C 195 THR GLU LEU LEU ASP LEU ILE PRO PHE PHE GLU GLY LEU SEQRES 15 C 195 SER ARG GLU ASP ASP GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 195 MET SER LEU ARG GLN VAL ILE PRO ILE PRO SER PRO PRO SEQRES 2 D 195 ALA LYS TYR LEU LEU PRO GLU VAL THR VAL LEU ASP TYR SEQRES 3 D 195 GLY LYS LYS CYS VAL VAL ILE ASP LEU ASP GLU THR LEU SEQRES 4 D 195 VAL HIS SER SER PHE LYS PRO ILE SER ASN ALA ASP PHE SEQRES 5 D 195 ILE VAL PRO VAL GLU ILE ASP GLY THR ILE HIS GLN VAL SEQRES 6 D 195 TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN SEQRES 7 D 195 ARG MET GLY GLN LEU PHE GLU CYS VAL LEU PHE THR ALA SEQRES 8 D 195 SER LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU SEQRES 9 D 195 ASP ARG TRP GLY VAL PHE ARG ALA ARG LEU PHE ARG GLU SEQRES 10 D 195 SER CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SEQRES 11 D 195 SER ARG LEU GLY ARG GLU LEU SER LYS VAL ILE ILE VAL SEQRES 12 D 195 ASP ASN SER PRO ALA SER TYR ILE PHE HIS PRO GLU ASN SEQRES 13 D 195 ALA VAL PRO VAL GLN SER TRP PHE ASP ASP MET THR ASP SEQRES 14 D 195 THR GLU LEU LEU ASP LEU ILE PRO PHE PHE GLU GLY LEU SEQRES 15 D 195 SER ARG GLU ASP ASP GLU GLY HIS HIS HIS HIS HIS HIS HET KEG A 902 53 HET KEG C 900 52 HET KEG D 901 53 HETNAM KEG 12-TUNGSTOPHOSPHATE FORMUL 5 KEG 3(O40 P W12) FORMUL 8 HOH *540(H2 O) HELIX 1 1 THR A 22 TYR A 26 5 5 HELIX 2 2 HIS A 72 PHE A 84 1 13 HELIX 3 3 LEU A 93 ASP A 105 1 13 HELIX 4 4 PHE A 115 CYS A 119 5 5 HELIX 5 5 ASP A 129 LEU A 133 5 5 HELIX 6 6 GLU A 136 SER A 138 5 3 HELIX 7 7 SER A 146 ILE A 151 5 6 HELIX 8 8 HIS A 153 GLU A 155 5 3 HELIX 9 9 THR A 170 ARG A 184 1 15 HELIX 10 10 THR B 22 TYR B 26 5 5 HELIX 11 11 HIS B 72 PHE B 84 1 13 HELIX 12 12 LEU B 93 ASP B 105 1 13 HELIX 13 13 PHE B 115 CYS B 119 5 5 HELIX 14 14 ASP B 129 LEU B 133 5 5 HELIX 15 15 GLU B 136 SER B 138 5 3 HELIX 16 16 SER B 146 ILE B 151 5 6 HELIX 17 17 HIS B 153 GLU B 155 5 3 HELIX 18 18 THR B 170 ARG B 184 1 15 HELIX 19 19 HIS C 72 PHE C 84 1 13 HELIX 20 20 LEU C 93 ASP C 105 1 13 HELIX 21 21 PHE C 115 CYS C 119 5 5 HELIX 22 22 ASP C 129 LEU C 133 5 5 HELIX 23 23 GLU C 136 SER C 138 5 3 HELIX 24 24 SER C 146 ILE C 151 5 6 HELIX 25 25 HIS C 153 GLU C 155 5 3 HELIX 26 26 THR C 170 ASP C 186 1 17 HELIX 27 27 HIS D 72 PHE D 84 1 13 HELIX 28 28 LEU D 93 ASP D 105 1 13 HELIX 29 29 PHE D 115 CYS D 119 5 5 HELIX 30 30 ASP D 129 LEU D 133 5 5 HELIX 31 31 GLU D 136 SER D 138 5 3 HELIX 32 32 SER D 146 ILE D 151 5 6 HELIX 33 33 HIS D 153 GLU D 155 5 3 HELIX 34 34 THR D 170 GLU D 185 1 16 SHEET 1 A 5 PHE A 110 LEU A 114 0 SHEET 2 A 5 GLU A 85 PHE A 89 1 N LEU A 88 O LEU A 114 SHEET 3 A 5 CYS A 30 ILE A 33 1 N ILE A 33 O VAL A 87 SHEET 4 A 5 VAL A 140 ASP A 144 1 O ILE A 141 N VAL A 32 SHEET 5 A 5 ALA A 157 PRO A 159 1 O VAL A 158 N ILE A 142 SHEET 1 B 3 VAL A 40 SER A 43 0 SHEET 2 B 3 THR A 61 LYS A 69 -1 O TYR A 66 N SER A 43 SHEET 3 B 3 PHE A 52 ILE A 58 -1 N VAL A 56 O HIS A 63 SHEET 1 C 2 VAL A 120 HIS A 122 0 SHEET 2 C 2 ASN A 125 VAL A 127 -1 O VAL A 127 N VAL A 120 SHEET 1 D 5 PHE B 110 LEU B 114 0 SHEET 2 D 5 GLU B 85 PHE B 89 1 N CYS B 86 O ARG B 111 SHEET 3 D 5 CYS B 30 ILE B 33 1 N ILE B 33 O VAL B 87 SHEET 4 D 5 VAL B 140 ASP B 144 1 O VAL B 143 N VAL B 32 SHEET 5 D 5 ALA B 157 PRO B 159 1 O VAL B 158 N ILE B 142 SHEET 1 E 3 VAL B 40 SER B 43 0 SHEET 2 E 3 THR B 61 LYS B 69 -1 O TYR B 66 N SER B 43 SHEET 3 E 3 PHE B 52 ILE B 58 -1 N ILE B 58 O THR B 61 SHEET 1 F 5 PHE C 110 LEU C 114 0 SHEET 2 F 5 GLU C 85 PHE C 89 1 N LEU C 88 O LEU C 114 SHEET 3 F 5 CYS C 30 ILE C 33 1 N ILE C 33 O VAL C 87 SHEET 4 F 5 VAL C 140 ASP C 144 1 O ILE C 141 N VAL C 32 SHEET 5 F 5 ALA C 157 PRO C 159 1 O VAL C 158 N ILE C 142 SHEET 1 G 3 VAL C 40 SER C 43 0 SHEET 2 G 3 THR C 61 LYS C 69 -1 O LEU C 68 N HIS C 41 SHEET 3 G 3 PHE C 52 ILE C 58 -1 N VAL C 56 O HIS C 63 SHEET 1 H 2 VAL C 120 HIS C 122 0 SHEET 2 H 2 ASN C 125 VAL C 127 -1 O ASN C 125 N HIS C 122 SHEET 1 I 5 PHE D 110 LEU D 114 0 SHEET 2 I 5 GLU D 85 PHE D 89 1 N LEU D 88 O LEU D 114 SHEET 3 I 5 CYS D 30 ILE D 33 1 N ILE D 33 O VAL D 87 SHEET 4 I 5 VAL D 140 ASP D 144 1 O ILE D 141 N VAL D 32 SHEET 5 I 5 ALA D 157 PRO D 159 1 O VAL D 158 N ILE D 142 SHEET 1 J 3 VAL D 40 SER D 43 0 SHEET 2 J 3 THR D 61 LYS D 69 -1 O TYR D 66 N SER D 43 SHEET 3 J 3 PHE D 52 ILE D 58 -1 N VAL D 56 O HIS D 63 SHEET 1 K 2 VAL D 120 HIS D 122 0 SHEET 2 K 2 ASN D 125 VAL D 127 -1 O ASN D 125 N HIS D 122 SITE 1 AC1 9 TYR A 26 GLY A 27 LYS A 28 HIS A 41 SITE 2 AC1 9 SER A 43 PHE A 44 LYS A 45 VAL B 6 SITE 3 AC1 9 PRO B 12 SITE 1 AC2 7 PRO A 55 ILE A 62 GLN A 64 HOH A 987 SITE 2 AC2 7 SER C 43 PHE C 44 LYS C 45 SITE 1 AC3 6 PRO B 55 ILE B 62 GLN B 64 SER D 43 SITE 2 AC3 6 PHE D 44 LYS D 45 CRYST1 47.419 49.857 179.747 90.00 96.90 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021089 0.000000 0.002552 0.00000 SCALE2 0.000000 0.020057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005604 0.00000