PDB Short entry for 2HOA HEADER DNA BINDING PROTEIN 04-APR-92 2HOA TITLE STRUCTURE DETERMINATION OF THE ANTP(C39->S) HOMEODOMAIN FROM NUCLEAR TITLE 2 MAGNETIC RESONANCE DATA IN SOLUTION USING A NOVEL STRATEGY FOR THE TITLE 3 STRUCTURE CALCULATION WITH THE PROGRAMS DIANA, CALIBA, HABAS AND TITLE 4 GLOMSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTENNAPEDIA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.GUNTERT,Y.-Q.QIAN,G.OTTING,M.MULLER,W.J.GEHRING,K.WUTHRICH REVDAT 4 09-MAR-22 2HOA 1 KEYWDS REMARK SEQADV REVDAT 3 24-FEB-09 2HOA 1 VERSN REVDAT 2 01-APR-03 2HOA 1 JRNL REVDAT 1 31-OCT-93 2HOA 0 JRNL AUTH P.GUNTERT,Y.Q.QIAN,G.OTTING,M.MULLER,W.GEHRING,K.WUTHRICH JRNL TITL STRUCTURE DETERMINATION OF THE ANTP (C39----S) HOMEODOMAIN JRNL TITL 2 FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION USING A JRNL TITL 3 NOVEL STRATEGY FOR THE STRUCTURE CALCULATION WITH THE JRNL TITL 4 PROGRAMS DIANA, CALIBA, HABAS AND GLOMSA. JRNL REF J.MOL.BIOL. V. 217 531 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1671604 JRNL DOI 10.1016/0022-2836(91)90755-U REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.-Q.QIAN,M.BILLETER,G.OTTING,M.MUELLER,W.J.GEHRING, REMARK 1 AUTH 2 K.WUTHRICH REMARK 1 TITL THE STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN DETERMINED BY REMARK 1 TITL 2 NMR SPECTROSCOPY IN SOLUTION: COMPARISON WITH PROKARYOTIC REMARK 1 TITL 3 REPRESSORS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 59 573 1989 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.BILLETER,Y.-Q.QIAN,G.OTTING,M.MUELLER,W.J.GEHRING, REMARK 1 AUTH 2 K.WUTHRICH REMARK 1 TITL DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE REMARK 1 TITL 2 ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H REMARK 1 TITL 3 NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY REMARK 1 REF J.MOL.BIOL. V. 214 183 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH G.OTTING,Y.-Q.QIAN,M.MUELLER,M.AFFOLTER,W.J.GEHRING, REMARK 1 AUTH 2 K.WUTHRICH REMARK 1 TITL SECONDARY STRUCTURE DETERMINATION FOR THE ANTENNAPEDIA REMARK 1 TITL 2 HOMEODOMAIN BY NUCLEAR MAGNETIC RESONANCE AND EVIDENCE FOR A REMARK 1 TITL 3 HELIX-TURN-HELIX MOTIF REMARK 1 REF EMBO J. V. 7 4305 1988 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA, AMBER REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH (DIANA), REMARK 3 PEARLMAN,CASE,CALDWELL,SIEBEL,SINGH,WEINER,KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HOA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178213. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 TYR A 25 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 7 TYR A 25 CB - CG - CD1 ANGL. DEV. = 11.4 DEGREES REMARK 500 8 ARG A 53 C - N - CA ANGL. DEV. = 18.0 DEGREES REMARK 500 10 TYR A 25 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 13 TYR A 25 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 14 TYR A 25 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 15 TYR A 25 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 15 TYR A 25 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 18 TYR A 25 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 19 TYR A 25 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 1 -96.47 -163.28 REMARK 500 1 LYS A 2 74.41 50.04 REMARK 500 1 SER A 39 72.33 70.81 REMARK 500 1 THR A 62 -44.96 -141.36 REMARK 500 2 LYS A 2 85.45 -154.56 REMARK 500 2 ARG A 3 -89.07 -97.11 REMARK 500 2 ARG A 5 92.51 78.33 REMARK 500 2 PHE A 22 -75.42 -82.57 REMARK 500 2 SER A 39 60.16 117.16 REMARK 500 2 LYS A 58 38.90 -81.28 REMARK 500 2 ASN A 60 12.52 57.60 REMARK 500 2 LYS A 61 62.98 -155.25 REMARK 500 3 ARG A 1 -99.14 46.17 REMARK 500 3 ARG A 3 -155.19 45.91 REMARK 500 3 GLN A 6 -165.87 56.32 REMARK 500 3 LEU A 38 -85.16 -94.65 REMARK 500 3 SER A 39 52.50 158.43 REMARK 500 3 ASN A 60 62.58 -116.42 REMARK 500 3 GLU A 65 73.20 -152.85 REMARK 500 4 LYS A 2 31.72 -145.59 REMARK 500 4 ARG A 5 87.74 -153.83 REMARK 500 4 PHE A 22 -76.75 -80.78 REMARK 500 4 SER A 39 63.52 80.81 REMARK 500 4 LYS A 61 67.05 -157.57 REMARK 500 4 THR A 62 103.06 71.32 REMARK 500 4 PRO A 66 37.21 -76.24 REMARK 500 5 ARG A 1 92.36 68.24 REMARK 500 5 SER A 39 79.41 70.39 REMARK 500 5 ASN A 60 92.36 -170.47 REMARK 500 5 LYS A 61 -58.28 -135.27 REMARK 500 5 THR A 62 -32.78 -174.59 REMARK 500 6 ARG A 1 -91.30 44.98 REMARK 500 6 ARG A 3 -158.84 58.62 REMARK 500 6 GLN A 6 113.22 77.66 REMARK 500 6 SER A 39 58.30 78.22 REMARK 500 6 ASN A 60 93.84 -164.00 REMARK 500 6 LYS A 63 -156.47 54.15 REMARK 500 6 GLU A 65 79.40 -107.76 REMARK 500 7 ARG A 1 -47.37 -177.84 REMARK 500 7 ARG A 3 -173.13 58.90 REMARK 500 7 ARG A 5 114.30 67.62 REMARK 500 7 THR A 7 32.82 -81.73 REMARK 500 7 LEU A 38 -80.37 -84.34 REMARK 500 7 SER A 39 57.42 150.05 REMARK 500 7 THR A 62 -60.41 -99.85 REMARK 500 8 ARG A 1 138.30 -170.18 REMARK 500 8 ARG A 5 72.64 66.60 REMARK 500 8 GLN A 6 179.31 70.05 REMARK 500 8 SER A 39 60.84 73.59 REMARK 500 8 ASN A 51 -73.05 -51.28 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 51 ARG A 52 8 -120.63 REMARK 500 ARG A 52 ARG A 53 8 -98.61 REMARK 500 ARG A 53 MET A 54 8 128.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 25 0.06 SIDE CHAIN REMARK 500 1 ARG A 30 0.08 SIDE CHAIN REMARK 500 2 ARG A 29 0.08 SIDE CHAIN REMARK 500 2 ARG A 31 0.13 SIDE CHAIN REMARK 500 3 TYR A 8 0.09 SIDE CHAIN REMARK 500 3 TYR A 11 0.10 SIDE CHAIN REMARK 500 3 TYR A 25 0.07 SIDE CHAIN REMARK 500 3 ARG A 31 0.08 SIDE CHAIN REMARK 500 4 PHE A 22 0.11 SIDE CHAIN REMARK 500 4 ARG A 30 0.08 SIDE CHAIN REMARK 500 6 TYR A 11 0.08 SIDE CHAIN REMARK 500 6 TYR A 25 0.15 SIDE CHAIN REMARK 500 6 ARG A 30 0.11 SIDE CHAIN REMARK 500 7 PHE A 20 0.08 SIDE CHAIN REMARK 500 7 ARG A 31 0.11 SIDE CHAIN REMARK 500 8 TYR A 25 0.07 SIDE CHAIN REMARK 500 10 TYR A 8 0.09 SIDE CHAIN REMARK 500 10 TYR A 25 0.15 SIDE CHAIN REMARK 500 11 TYR A 8 0.12 SIDE CHAIN REMARK 500 11 ARG A 24 0.11 SIDE CHAIN REMARK 500 12 PHE A 22 0.06 SIDE CHAIN REMARK 500 12 ARG A 52 0.12 SIDE CHAIN REMARK 500 13 TYR A 11 0.12 SIDE CHAIN REMARK 500 13 ARG A 52 0.08 SIDE CHAIN REMARK 500 14 TYR A 8 0.09 SIDE CHAIN REMARK 500 14 ARG A 24 0.09 SIDE CHAIN REMARK 500 14 ARG A 52 0.10 SIDE CHAIN REMARK 500 14 ARG A 53 0.08 SIDE CHAIN REMARK 500 15 PHE A 22 0.06 SIDE CHAIN REMARK 500 15 ARG A 31 0.09 SIDE CHAIN REMARK 500 16 TYR A 25 0.10 SIDE CHAIN REMARK 500 16 PHE A 49 0.08 SIDE CHAIN REMARK 500 16 ARG A 52 0.11 SIDE CHAIN REMARK 500 18 TYR A 25 0.09 SIDE CHAIN REMARK 500 18 ARG A 53 0.08 SIDE CHAIN REMARK 500 19 PHE A 22 0.08 SIDE CHAIN REMARK 500 19 ARG A 31 0.08 SIDE CHAIN REMARK 500 19 ARG A 52 0.09 SIDE CHAIN REMARK 500 20 TYR A 8 0.07 SIDE CHAIN REMARK 500 20 ARG A 24 0.11 SIDE CHAIN REMARK 500 20 ARG A 52 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 8 ASN A 51 10.45 REMARK 500 8 ARG A 53 -10.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 2HOA A 1 67 UNP P02833 ANTP_DROME 297 363 SEQADV 2HOA SER A 39 UNP P02833 CYS 335 CONFLICT SEQRES 1 A 68 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 A 68 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 A 68 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 A 68 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 A 68 ARG ARG MET LYS TRP LYS LYS GLU ASN LYS THR LYS GLY SEQRES 6 A 68 GLU PRO GLY HELIX 1 H1 ARG A 10 HIS A 21 1ALPHA HELIX 12 HELIX 2 H2 ARG A 28 LEU A 38 1ALPHA HELIX 11 HELIX 3 H3 GLU A 42 ARG A 52 1ALPHA HELIX 11 HELIX 4 H4 ARG A 53 GLU A 59 1DISORDERED HELIX 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000