PDB Short entry for 2HOS HEADER TRANSCRIPTION/DNA 16-JUL-06 2HOS TITLE PHAGE-SELECTED HOMEODOMAIN BOUND TO UNMODIFIED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP COMPND 3 *GP*GP*A)-3'; COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP COMPND 8 *AP*AP*A)-3'; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: SEGMENTATION POLARITY HOMEOBOX PROTEIN ENGRAILED; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: ENGRAILED HOMEODOMAIN; COMPND 15 SYNONYM: HOMEOBOX; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: COMMERCIAL SOLID PHASE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: COMMERCIAL SOLID PHASE SYNTHESIS; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 9 ORGANISM_COMMON: FRUIT FLY; SOURCE 10 ORGANISM_TAXID: 7227; SOURCE 11 GENE: EN; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PMAL-C2; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PMAL-ENHDF KEYWDS HOMEODOMAIN, PHAGE DISPLAY, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.SHOKAT,M.E.FELDMAN,M.D.SIMON REVDAT 7 30-AUG-23 2HOS 1 REMARK REVDAT 6 20-OCT-21 2HOS 1 REMARK SEQADV REVDAT 5 18-OCT-17 2HOS 1 REMARK REVDAT 4 13-JUL-11 2HOS 1 VERSN REVDAT 3 24-FEB-09 2HOS 1 VERSN REVDAT 2 08-MAY-07 2HOS 1 JRNL REVDAT 1 12-DEC-06 2HOS 0 JRNL AUTH M.D.SIMON,M.E.FELDMAN,D.RAUH,A.E.MARIS,D.E.WEMMER,K.M.SHOKAT JRNL TITL STRUCTURE AND PROPERTIES OF A RE-ENGINEERED HOMEODOMAIN JRNL TITL 2 PROTEIN-DNA INTERFACE. JRNL REF ACS CHEM.BIOL. V. 1 755 2006 JRNL REFN ISSN 1554-8929 JRNL PMID 17240973 JRNL DOI 10.1021/CB6003756 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 23285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 950 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1977 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2829 ; 1.702 ; 2.506 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 122 ; 4.613 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;30.522 ;22.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 205 ;14.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1217 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 703 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1224 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 598 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 923 ; 1.132 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 1.726 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1901 ; 2.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0160 29.5070 32.7710 REMARK 3 T TENSOR REMARK 3 T11: .0597 T22: -.2044 REMARK 3 T33: -.2127 T12: -.0314 REMARK 3 T13: .1222 T23: .0044 REMARK 3 L TENSOR REMARK 3 L11: 2.4584 L22: 12.6404 REMARK 3 L33: 6.3337 L12: -1.0140 REMARK 3 L13: -1.2035 L23: 1.3568 REMARK 3 S TENSOR REMARK 3 S11: .0802 S12: .0281 S13: -.0139 REMARK 3 S21: -.9454 S22: .0106 S23: -.8471 REMARK 3 S31: -.0608 S32: .2179 S33: -.0907 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6340 20.2970 62.2880 REMARK 3 T TENSOR REMARK 3 T11: -.1067 T22: -.2502 REMARK 3 T33: -.2947 T12: -.0134 REMARK 3 T13: .0047 T23: -.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.3849 L22: 11.4431 REMARK 3 L33: 3.3347 L12: -.1014 REMARK 3 L13: -1.9005 L23: -1.4333 REMARK 3 S TENSOR REMARK 3 S11: -.0930 S12: -.0582 S13: -.0542 REMARK 3 S21: .2189 S22: .0418 S23: .2225 REMARK 3 S31: .0915 S32: .0000 S33: .0511 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 RESIDUE RANGE : D 22 D 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1870 28.4350 47.8570 REMARK 3 T TENSOR REMARK 3 T11: .0264 T22: .2235 REMARK 3 T33: .1370 T12: -.1430 REMARK 3 T13: -.0708 T23: .0375 REMARK 3 L TENSOR REMARK 3 L11: 11.5285 L22: .4576 REMARK 3 L33: .5300 L12: 2.1346 REMARK 3 L13: -1.3477 L23: -.0972 REMARK 3 S TENSOR REMARK 3 S11: -.2852 S12: -.4113 S13: -.8804 REMARK 3 S21: -.1822 S22: .1812 S23: -.5553 REMARK 3 S31: -.0844 S32: .2985 S33: .1041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2HDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL: 20% PEG400, 100MM NH4OAC DROP: REMARK 280 0.5MM DNA PROTEIN COMPLEX, 0.55M NH4OAC, 3.5MM BIS-TRIS-PROPANE, REMARK 280 10% PEG-400, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.54850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.51250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.54850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.51250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ASP B 0 REMARK 465 GLU B 1 REMARK 465 THR B 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CD CE NZ REMARK 470 LYS A 58 CD CE NZ REMARK 470 THR A 60 CB OG1 CG2 REMARK 470 LYS B 2 CD CE NZ REMARK 470 LYS B 58 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 20 O3' DG C 20 C3' -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 6 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 11 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 18 P - O5' - C5' ANGL. DEV. = -12.0 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA D 22 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 23 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 24 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG D 26 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 26 O4' - C1' - N9 ANGL. DEV. = 7.3 DEGREES REMARK 500 DG D 28 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 29 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 30 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 31 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 34 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT D 36 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG D 38 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG D 38 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3MO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HDD RELATED DB: PDB REMARK 900 ENGRAILED HOMEODOMAIN Q50K MUTANT BOUND TO IDENTICAL DNA REMARK 900 RELATED ID: 2HOT RELATED DB: PDB DBREF 2HOS A 0 60 UNP P02836 HMEN_DROME 453 513 DBREF 2HOS B 0 60 UNP P02836 HMEN_DROME 453 513 DBREF 2HOS C 1 21 PDB 2HOS 2HOS 1 21 DBREF 2HOS D 22 42 PDB 2HOS 2HOS 22 42 SEQADV 2HOS GLY A -2 UNP P02836 CLONING ARTIFACT SEQADV 2HOS SER A -1 UNP P02836 CLONING ARTIFACT SEQADV 2HOS VAL A 45 UNP P02836 ILE 498 ENGINEERED MUTATION SEQADV 2HOS GLY A 47 UNP P02836 ILE 500 ENGINEERED MUTATION SEQADV 2HOS LYS A 50 UNP P02836 GLN 503 ENGINEERED MUTATION SEQADV 2HOS MET A 52 UNP P02836 LYS 505 ENGINEERED MUTATION SEQADV 2HOS GLY B -2 UNP P02836 CLONING ARTIFACT SEQADV 2HOS SER B -1 UNP P02836 CLONING ARTIFACT SEQADV 2HOS VAL B 45 UNP P02836 ILE 498 ENGINEERED MUTATION SEQADV 2HOS GLY B 47 UNP P02836 ILE 500 ENGINEERED MUTATION SEQADV 2HOS LYS B 50 UNP P02836 GLN 503 ENGINEERED MUTATION SEQADV 2HOS MET B 52 UNP P02836 LYS 505 ENGINEERED MUTATION SEQRES 1 C 21 DT DT DT DT DG DC DC DA DT DG DT DA DA SEQRES 2 C 21 DT DC DC DC DC DG DG DA SEQRES 1 D 21 DA DT DC DC DG DG DG DG DA DT DT DA DC SEQRES 2 D 21 DA DT DG DG DC DA DA DA SEQRES 1 A 63 GLY SER ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER SEQRES 2 A 63 GLU GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN SEQRES 3 A 63 ARG TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER SEQRES 4 A 63 GLU LEU GLY LEU ASN GLU ALA GLN VAL LYS GLY TRP PHE SEQRES 5 A 63 LYS ASN MET ARG ALA LYS ILE LYS LYS SER THR SEQRES 1 B 63 GLY SER ASP GLU LYS ARG PRO ARG THR ALA PHE SER SER SEQRES 2 B 63 GLU GLN LEU ALA ARG LEU LYS ARG GLU PHE ASN GLU ASN SEQRES 3 B 63 ARG TYR LEU THR GLU ARG ARG ARG GLN GLN LEU SER SER SEQRES 4 B 63 GLU LEU GLY LEU ASN GLU ALA GLN VAL LYS GLY TRP PHE SEQRES 5 B 63 LYS ASN MET ARG ALA LYS ILE LYS LYS SER THR HET GOL C 204 6 HET GOL A 201 6 HET 3MO B 301 7 HET GOL B 202 6 HET GOL B 203 6 HETNAM GOL GLYCEROL HETNAM 3MO 3-METHYL-1,3-OXAZOLIDIN-2-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 3MO 3-METHYL-2-OXAZOLIDINONE FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 3MO C4 H7 N O2 FORMUL 10 HOH *129(H2 O) HELIX 1 1 SER A 9 ASN A 23 1 15 HELIX 2 2 THR A 27 GLY A 39 1 13 HELIX 3 3 ASN A 41 THR A 60 1 20 HELIX 4 4 SER B 9 ASN B 23 1 15 HELIX 5 5 THR B 27 GLY B 39 1 13 HELIX 6 6 ASN B 41 SER B 59 1 19 SITE 1 AC1 5 SER B 9 GLU B 11 TYR B 25 LEU B 38 SITE 2 AC1 5 GOL C 204 SITE 1 AC2 7 ASN A 51 MET A 52 LYS A 55 HOH A 206 SITE 2 AC2 7 HOH A 209 DT C 11 DA C 12 SITE 1 AC3 4 PHE B 20 ASN B 21 ARG B 24 HOH B 308 SITE 1 AC4 5 ARG B 24 TYR B 25 GLU B 37 ARG B 53 SITE 2 AC4 5 HOH C 210 SITE 1 AC5 4 3MO B 301 DC C 18 DG C 19 HOH C 227 CRYST1 127.097 45.025 73.081 90.00 118.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007868 0.000000 0.004256 0.00000 SCALE2 0.000000 0.022210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015557 0.00000